FN3879-S Chr1 16687835 G-T 0 0 Single Base Substitution 0 Homo FN3879-S Chr1 18243489 18243495 0 0 Deletion 6 disruptive_inframe_deletion Homo LOC_Os01g33136 retrotransposon protein, putative, unclassified, expressed FN3879-S Chr1 22613633 C-T 0 0 Single Base Substitution 0 HET FN3879-S Chr1 34977060 C-G 0 0 Single Base Substitution 0 HET FN3879-S Chr1 35231137 35231138 0 0 Deletion 1 frameshift_variant HET LOC_Os01g60910 CAMK_KIN1/SNF1/Nim1_like.12 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN3879-S Chr1 36934100 C-T 0 0 Single Base Substitution 0 HET FN3879-S Chr1 6811604 A-T 0 0 Single Base Substitution 0 HET FN3879-S Chr1 8435159 G-A 0 0 Single Base Substitution 0 HET FN3879-S Chr10 10698803 10698805 0 0 Deletion 2 HET FN3879-S Chr10 15430681 15530667 0 0 Inversion 0 LOC_Os10g29670 expressed protein FN3879-S Chr10 15430683 16138536 0 0 Inversion 0 LOC_Os10g29670 expressed protein FN3879-S Chr10 15530667 Chr6 28017518 0 Translocation 0 FN3879-S Chr10 16187662 G-A 0 0 Single Base Substitution 0 HET FN3879-S Chr10 21410549 21664552 0 0 Inversion 0 FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40470 LTPL142 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40480 LTPL143 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40490 U-box domain containing protein, expressed FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40510 LTPL144 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40520 LTPL145 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40530 LTPL146 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40540 enoyl-CoA hydratase/isomerase family protein, putative, expressed FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40550 CPuORF23 - conserved peptide uORF-containing transcript, expressed FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40555 expressed protein FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40559 exostosin family domain containing protein, expressed FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40570 flavin-containing monooxygenase family protein, putative, expressed FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40580 expressed protein FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40584 zinc finger family protein, putative, expressed FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40590 oxysterol-binding protein, putative, expressed FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40600 peptide transporter PTR2, putative, expressed FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40610 flavin-containing monooxygenase family protein, putative, expressed FN3879-S Chr10 21668001 21781000 0 0 Deletion 112999 LOC_Os10g40612 retrotransposon protein, putative, unclassified, expressed FN3879-S Chr10 21784001 21857000 0 0 Deletion 72999 LOC_Os10g40614 LTPL147 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3879-S Chr10 21784001 21857000 0 0 Deletion 72999 LOC_Os10g40620 expressed protein FN3879-S Chr10 21784001 21857000 0 0 Deletion 72999 LOC_Os10g40640 glycosyl transferase 8 domain containing protein, putative, expressed FN3879-S Chr10 21784001 21857000 0 0 Deletion 72999 LOC_Os10g40650 holliday junction resolvase, putative, expressed FN3879-S Chr10 21784001 21857000 0 0 Deletion 72999 LOC_Os10g40660 ZOS10-07 - C2H2 zinc finger protein, expressed FN3879-S Chr10 21784001 21857000 0 0 Deletion 72999 LOC_Os10g40680 expressed protein FN3879-S Chr10 21784001 21857000 0 0 Deletion 72999 LOC_Os10g40700 expansin precursor, putative, expressed FN3879-S Chr10 21784001 21857000 0 0 Deletion 72999 LOC_Os10g40710 expansin precursor, putative, expressed FN3879-S Chr10 21784001 21857000 0 0 Deletion 72999 LOC_Os10g40720 expansin precursor, putative, expressed FN3879-S Chr10 21859629 Chr6 28020274 0 Translocation 0 LOC_Os06g46250 expressed protein FN3879-S Chr10 21859629 Chr6 28020274 0 Translocation 0 LOC_Os10g40730 expansin precursor, putative, expressed FN3879-S Chr10 22822941 G-A 0 0 Single Base Substitution 0 HET FN3879-S Chr10 23081693 G-A 0 0 Single Base Substitution 0 HET FN3879-S Chr10 6985296 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g12548 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3879-S Chr10 9034193 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g17870 retrotransposon protein, putative, Ty3-gypsy subclass FN3879-S Chr11 13103164 C-A 0 0 Single Base Substitution 0 HET FN3879-S Chr11 13468942 13468945 0 0 Deletion 3 HET FN3879-S Chr11 25388001 25406000 0 0 Deletion 17999 LOC_Os11g42160 F-box/LRR-repeat protein 3, putative, expressed FN3879-S Chr11 25388001 25406000 0 0 Deletion 17999 LOC_Os11g42170 expressed protein FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42200 laccase precursor protein, putative, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42210 expressed protein FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42220 laccase precursor protein, putative, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42230 OsFBX430 - F-box domain containing protein, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42240 OsFBX431 - F-box domain containing protein, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42270 OsFBX432 - F-box domain containing protein, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42280 OsFBX433 - F-box domain containing protein, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42290 transferase family protein, putative, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42300 OsFBX434 - F-box domain containing protein, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42310 OsFBL58 - F-box domain and LRR containing protein, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42330 retrotransposon protein, putative, Ty3-gypsy subclass FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42340 expressed protein FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42350 glutathione synthetase, chloroplast precursor, putative, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42360 expressed protein FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42370 transferase family protein, putative, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42380 expressed protein FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42390 OsSCP64 - Putative Serine Carboxypeptidase homologue, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42400 expressed protein FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42410 expressed protein FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42420 nuclear pore protein 84/107 containing protein, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42430 transporter family protein, putative, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42440 expressed protein FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42450 leucine-rich repeat family protein, putative, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42470 expressed protein FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42480 transferase family domain containing protein, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42490 retrotransposon protein, putative, unclassified, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42500 dirigent, putative, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42510 tyrosine aminotransferase, putative, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42520 DEFL34 - Defensin and Defensin-like DEFL family, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42525 hypothetical protein FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42530 DEFL25 - Defensin and Defensin-like DEFL family FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42540 oxidoreductase, aldo/keto reductase family protein, putative, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42550 dirigent, putative, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42570 NBS-LRR type disease resistance protein, putative, expressed FN3879-S Chr11 25416001 25631000 0 0 Deletion 214999 LOC_Os11g42580 Leucine Rich Repeat family protein, expressed FN3879-S Chr11 25636001 25662000 0 0 Deletion 25999 LOC_Os11g42590 expressed protein FN3879-S Chr11 25636001 25662000 0 0 Deletion 25999 LOC_Os11g42600 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3879-S Chr11 25636001 25662000 0 0 Deletion 25999 LOC_Os11g42610 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3879-S Chr11 25636001 25662000 0 0 Deletion 25999 LOC_Os11g42620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3879-S Chr11 26583519 G-A 0 0 Single Base Substitution 0 HET FN3879-S Chr11 3052022 C-T 0 0 Single Base Substitution 0 HET FN3879-S Chr12 13416386 T-A 0 0 Single Base Substitution 0 HET FN3879-S Chr12 15076764 T-A 0 0 Single Base Substitution 0 HET FN3879-S Chr12 19783924 19783925 0 0 Deletion 1 HET FN3879-S Chr12 22583591 22583921 0 0 Inversion 0 FN3879-S Chr12 3696001 3711000 0 0 Deletion 14999 LOC_Os12g07470 expressed protein FN3879-S Chr12 3696001 3711000 0 0 Deletion 14999 LOC_Os12g07480 TCP family transcription factor, putative, expressed FN3879-S Chr2 11795839 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g20030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3879-S Chr2 2495545 G-A 0 0 Single Base Substitution 0 HET FN3879-S Chr2 33583618 A-T 0 0 Single Base Substitution 0 HET FN3879-S Chr2 4545111 4545114 0 0 Deletion 3 HET FN3879-S Chr2 9445227 A-C 0 0 Single Base Substitution 0 Homo FN3879-S Chr3 21871447 C-T 0 0 Single Base Substitution 0 HET FN3879-S Chr3 23040026 23040035 0 0 Deletion 9 HET FN3879-S Chr3 27016272 A-G 0 0 Single Base Substitution 0 HET FN3879-S Chr3 30408311 A-G 0 0 Single Base Substitution 0 HET FN3879-S Chr4 1250333 G-C 0 0 Single Base Substitution 0 HET FN3879-S Chr4 13288479 C-G 0 0 Single Base Substitution 0 HET FN3879-S Chr4 14347046 C-G 0 0 Single Base Substitution 0 HET FN3879-S Chr4 14495251 14495256 0 0 Deletion 5 Homo FN3879-S Chr4 22583035 22583047 0 0 Deletion 12 HET FN3879-S Chr4 25315637 25315637 0 0 Insertion 1 frameshift_variant HET LOC_Os04g42770 expressed protein FN3879-S Chr4 25950707 25950719 0 0 Deletion 12 HET FN3879-S Chr5 11533001 11633000 0 0 Deletion 99999 LOC_Os05g19780 retrotransposon protein, putative, unclassified, expressed FN3879-S Chr5 11533001 11633000 0 0 Deletion 99999 LOC_Os05g19790 retrotransposon protein, putative, unclassified FN3879-S Chr5 11533001 11633000 0 0 Deletion 99999 LOC_Os05g19810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3879-S Chr5 11533001 11633000 0 0 Deletion 99999 LOC_Os05g19820 retrotransposon protein, putative, unclassified FN3879-S Chr5 11533001 11633000 0 0 Deletion 99999 LOC_Os05g19840 retrotransposon protein, putative, unclassified FN3879-S Chr5 11533001 11633000 0 0 Deletion 99999 LOC_Os05g19850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3879-S Chr5 11533001 11633000 0 0 Deletion 99999 LOC_Os05g19860 transposon protein, putative, unclassified FN3879-S Chr5 11533001 11633000 0 0 Deletion 99999 LOC_Os05g19870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3879-S Chr5 11533001 11633000 0 0 Deletion 99999 LOC_Os05g19880 retrotransposon protein, putative, unclassified FN3879-S Chr5 11533001 11633000 0 0 Deletion 99999 LOC_Os05g19890 retrotransposon protein, putative, Ty3-gypsy subclass FN3879-S Chr5 11533001 11633000 0 0 Deletion 99999 LOC_Os05g19900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3879-S Chr5 11533001 11633000 0 0 Deletion 99999 LOC_Os05g19910 transferase family protein, putative, expressed FN3879-S Chr5 11533001 11633000 0 0 Deletion 99999 LOC_Os05g19920 hypothetical protein FN3879-S Chr5 11533001 11633000 0 0 Deletion 99999 LOC_Os05g19930 retrotransposon protein, putative, unclassified FN3879-S Chr5 11640001 11712000 0 0 Deletion 71999 LOC_Os05g19954 tRNA pseudouridine synthase family protein, putative, expressed FN3879-S Chr5 11640001 11712000 0 0 Deletion 71999 LOC_Os05g19970 ZOS5-06 - C2H2 zinc finger protein, expressed FN3879-S Chr5 11640001 11712000 0 0 Deletion 71999 LOC_Os05g19974 endonuclease/exonuclease/phosphatase family protein, putative, expressed FN3879-S Chr5 11640001 11712000 0 0 Deletion 71999 LOC_Os05g19980 hypothetical protein FN3879-S Chr5 11640001 11712000 0 0 Deletion 71999 LOC_Os05g19990 retrotransposon protein, putative, unclassified, expressed FN3879-S Chr5 11640001 11712000 0 0 Deletion 71999 LOC_Os05g20000 retrotransposon protein, putative, unclassified, expressed FN3879-S Chr5 11640001 11712000 0 0 Deletion 71999 LOC_Os05g20010 expressed protein FN3879-S Chr5 11640001 11712000 0 0 Deletion 71999 LOC_Os05g20020 polygalacturonase, putative, expressed FN3879-S Chr5 11640001 11712000 0 0 Deletion 71999 LOC_Os05g20030 DUF617 domain containing protein, expressed FN3879-S Chr5 20132807 20132808 0 0 Deletion 1 HET FN3879-S Chr5 22714201 T-C 0 0 Single Base Substitution 0 HET FN3879-S Chr6 16178073 A-C 0 0 Single Base Substitution 0 Homo FN3879-S Chr6 26149823 26149837 0 0 Deletion 14 HET FN3879-S Chr6 28018001 28050000 0 0 Deletion 31999 LOC_Os06g46250 expressed protein FN3879-S Chr6 28018001 28050000 0 0 Deletion 31999 LOC_Os06g46260 hypothetical protein FN3879-S Chr6 28018001 28050000 0 0 Deletion 31999 LOC_Os06g46270 no apical meristem protein, putative, expressed FN3879-S Chr6 28018001 28050000 0 0 Deletion 31999 LOC_Os06g46284 glycosyl hydrolase, family 31, putative, expressed FN3879-S Chr6 28052001 28060000 0 0 Deletion 7999 LOC_Os06g46284 glycosyl hydrolase, family 31, putative, expressed FN3879-S Chr6 28052001 28060000 0 0 Deletion 7999 LOC_Os06g46310 metal transporter Nramp6, putative, expressed FN3879-S Chr7 1100691 1100692 0 0 Deletion 1 HET FN3879-S Chr7 12712283 C-A 0 0 Single Base Substitution 0 Homo FN3879-S Chr7 13700719 13700721 0 0 Deletion 2 Homo FN3879-S Chr7 1451659 1451673 0 0 Deletion 14 HET FN3879-S Chr7 15508273 A-G 0 0 Single Base Substitution 0 Homo FN3879-S Chr7 16551931 16551943 0 0 Deletion 12 disruptive_inframe_deletion Homo LOC_Os07g28360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3879-S Chr7 17769311 17769747 0 0 Inversion 0 LOC_Os07g30110 expressed protein FN3879-S Chr7 22442566 G-A 0 0 Single Base Substitution 0 HET FN3879-S Chr7 25454778 25454780 0 0 Deletion 2 frameshift_variant HET LOC_Os07g42530 transposon protein, putative, unclassified, expressed FN3879-S Chr7 27652007 A-T 0 0 Single Base Substitution 0 HET FN3879-S Chr7 329915 329921 0 0 Deletion 6 HET FN3879-S Chr7 357715 444038 0 0 Inversion 0 LOC_Os07g01750 MATE efflux family protein, putative, expressed FN3879-S Chr7 357719 444041 0 0 Inversion 0 LOC_Os07g01750 MATE efflux family protein, putative, expressed FN3879-S Chr8 10361719 C-T 0 0 Single Base Substitution 0 HET FN3879-S Chr8 10576860 T-A 0 0 Single Base Substitution 0 HET FN3879-S Chr8 11755084 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g19640 hypothetical protein FN3879-S Chr8 15596167 15596182 0 0 Deletion 15 HET FN3879-S Chr8 21521246 C-T 0 0 Single Base Substitution 0 HET FN3879-S Chr9 18425005 18425006 0 0 Deletion 1 HET