FN3889-S Chr1 26647697 26647698 0 0 Deletion 1 HET FN3889-S Chr1 33618573 A-G 0 0 Single Base Substitution 0 HET FN3889-S Chr1 3393632 G-A 0 0 Single Base Substitution 0 Homo FN3889-S Chr1 36847121 36847122 0 0 Deletion 1 frameshift_variant HET LOC_Os01g63550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3889-S Chr1 7408257 T-C 0 0 Single Base Substitution 0 Homo FN3889-S Chr1 7518138 G-T 0 0 Single Base Substitution 0 Homo FN3889-S Chr1 7518266 7518271 0 0 Deletion 5 frameshift_variant Homo LOC_Os01g13480 glutaredoxin, putative, expressed FN3889-S Chr1 7925923 7925927 0 0 Deletion 4 Homo FN3889-S Chr1 9199213 9199229 0 0 Deletion 16 Homo FN3889-S Chr1 9620966 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g16850 retrotransposon protein, putative, unclassified, expressed FN3889-S Chr10 12449120 C-T 0 0 Single Base Substitution 0 Homo FN3889-S Chr10 13970868 A-G 0 0 Single Base Substitution 0 HET FN3889-S Chr10 18863398 T-C 0 0 Single Base Substitution 0 HET FN3889-S Chr10 5484403 Chr2 14658145 0 Translocation 0 FN3889-S Chr10 898384 898384 0 0 Insertion 1 HET FN3889-S Chr11 13631614 13631623 0 0 Deletion 9 HET FN3889-S Chr11 15885953 C-T 0 0 Single Base Substitution 0 Homo FN3889-S Chr11 24892805 A-T 0 0 Single Base Substitution 0 STOP_LOST HET LOC_Os11g41500 NC domain-containing protein, putative, expressed FN3889-S Chr11 24988027 G-A 0 0 Single Base Substitution 0 HET FN3889-S Chr11 7153900 7153900 0 0 Insertion 1 HET FN3889-S Chr11 7984950 7984957 0 0 Deletion 7 Homo FN3889-S Chr12 10363930 T-C 0 0 Single Base Substitution 0 HET FN3889-S Chr12 10584318 G-A 0 0 Single Base Substitution 0 HET FN3889-S Chr12 11544835 Chr1 23512574 0 Translocation 0 FN3889-S Chr12 12720356 A-T 0 0 Single Base Substitution 0 HET FN3889-S Chr12 13112812 A-T 0 0 Single Base Substitution 0 HET FN3889-S Chr12 15425789 15425790 0 0 Deletion 1 frameshift_variant HET LOC_Os12g26400 retrotransposon protein, putative, unclassified, expressed FN3889-S Chr12 18950977 18950983 0 0 Deletion 6 Homo FN3889-S Chr12 206403 206406 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os12g01350 csAtPR5, putative, expressed FN3889-S Chr12 22800132 Chr8 17299284 0 Translocation 0 LOC_Os08g28350 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3889-S Chr12 22800132 Chr8 17299284 0 Translocation 0 LOC_Os12g37180 transposon protein, putative, CACTA, En/Spm sub-class FN3889-S Chr12 24772947 G-A 0 0 Single Base Substitution 0 Homo FN3889-S Chr12 9383940 9383948 0 0 Deletion 8 frameshift_variant HET LOC_Os12g16390 retrotransposon protein, putative, unclassified, expressed FN3889-S Chr2 16887653 Chr1 16560143 0 Translocation 0 LOC_Os01g29540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3889-S Chr2 18733011 C-T 0 0 Single Base Substitution 0 Homo FN3889-S Chr2 2366419 G-T 0 0 Single Base Substitution 0 HET FN3889-S Chr2 27577232 27577234 0 0 Deletion 2 HET FN3889-S Chr2 293548 C-T 0 0 Single Base Substitution 0 HET FN3889-S Chr2 32170213 32170214 0 0 Deletion 1 Homo FN3889-S Chr2 34542558 34542559 0 0 Deletion 1 Homo FN3889-S Chr3 12759629 12759656 0 0 Deletion 27 HET FN3889-S Chr3 13362876 13362877 0 0 Deletion 1 frameshift_variant HET LOC_Os03g23110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3889-S Chr3 17576489 G-A 0 0 Single Base Substitution 0 HET FN3889-S Chr3 34473202 34473203 0 0 Deletion 1 Homo FN3889-S Chr3 487107 C-T 0 0 Single Base Substitution 0 HET FN3889-S Chr3 8273578 8273583 0 0 Deletion 5 frameshift_variant HET LOC_Os03g15140 retrotransposon protein, putative, unclassified, expressed FN3889-S Chr4 33146881 A-T 0 0 Single Base Substitution 0 HET FN3889-S Chr4 8476830 C-T 0 0 Single Base Substitution 0 Homo FN3889-S Chr4 9750436 T-C 0 0 Single Base Substitution 0 HET FN3889-S Chr5 11749525 G-A 0 0 Single Base Substitution 0 Homo FN3889-S Chr5 13287153 13287156 0 0 Deletion 3 Homo FN3889-S Chr5 15450988 A-G 0 0 Single Base Substitution 0 HET FN3889-S Chr5 19583032 G-A 0 0 Single Base Substitution 0 HET FN3889-S Chr5 23519537 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g40040 expressed protein FN3889-S Chr5 23575863 23575865 0 0 Deletion 2 frameshift_variant HET LOC_Os05g40140 retrotransposon protein, putative, unclassified FN3889-S Chr5 27634735 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g48200 glutamate synthase, chloroplast precursor, putative, expressed FN3889-S Chr6 13079186 13355413 0 0 Inversion 0 FN3889-S Chr6 13079189 13355463 0 0 Inversion 0 FN3889-S Chr6 15647883 15647891 0 0 Deletion 8 HET FN3889-S Chr6 2012511 2012703 0 0 Inversion 0 LOC_Os06g04610 ribosome-binding factor A, chloroplast precursor, putative, expressed FN3889-S Chr6 30436203 G-A 0 0 Single Base Substitution 0 Homo FN3889-S Chr7 15587356 Chr2 950260 0 Translocation 0 FN3889-S Chr7 15587365 Chr2 949876 0 Translocation 0 FN3889-S Chr7 20783800 G-A 0 0 Single Base Substitution 0 Homo FN3889-S Chr8 1150325 1150327 0 0 Deletion 2 frameshift_variant Homo LOC_Os08g02730 plant protein of unknown function domain containing protein, expressed FN3889-S Chr8 12109439 Chr2 9635747 0 Translocation 0 LOC_Os08g20180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3889-S Chr8 13777220 G-A 0 0 Single Base Substitution 0 HET FN3889-S Chr8 20736440 C-T 0 0 Single Base Substitution 0 HET FN3889-S Chr8 20779964 T-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os08g33320 expressed protein FN3889-S Chr8 6448074 6448074 0 0 Insertion 1 HET FN3889-S Chr8 7160701 C-T 0 0 Single Base Substitution 0 HET FN3889-S Chr9 10315700 10315700 0 0 Insertion 2 HET FN3889-S Chr9 1977223 1977226 0 0 Deletion 3 HET FN3889-S Chr9 8550350 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g14460 retrotransposon protein, putative, unclassified