FN3897-S Chr1 10743558 C-G 0 0 Single Base Substitution 0 Homo FN3897-S Chr1 10783051 G-T 0 0 Single Base Substitution 0 Homo FN3897-S Chr1 1221918 G-C 0 0 Single Base Substitution 0 Homo FN3897-S Chr1 22150845 G-A 0 0 Single Base Substitution 0 HET FN3897-S Chr1 22620520 T-C 0 0 Single Base Substitution 0 HET FN3897-S Chr1 22620546 G-A 0 0 Single Base Substitution 0 HET FN3897-S Chr1 31237437 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g54290 retrotransposon protein, putative, unclassified, expressed FN3897-S Chr1 34586021 34586030 0 0 Deletion 9 disruptive_inframe_deletion HET LOC_Os01g59800 EAP30/Vps36 family domain containing protein, expressed FN3897-S Chr1 36040411 T-C 0 0 Single Base Substitution 0 HET FN3897-S Chr1 37885638 G-C 0 0 Single Base Substitution 0 HET FN3897-S Chr1 4625009 5100467 0 0 Inversion 0 LOC_Os01g09200 AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed FN3897-S Chr1 4625009 5100467 0 0 Inversion 0 LOC_Os01g09850 ZOS1-04 - C2H2 zinc finger protein, expressed FN3897-S Chr1 4625017 5100470 0 0 Inversion 0 LOC_Os01g09200 AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed FN3897-S Chr1 4625017 5100470 0 0 Inversion 0 LOC_Os01g09850 ZOS1-04 - C2H2 zinc finger protein, expressed FN3897-S Chr1 8921853 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g15840 PPR repeat containing protein, expressed FN3897-S Chr10 12580401 Chr8 14922478 0 Translocation 0 FN3897-S Chr10 13292366 13292368 0 0 Deletion 2 HET FN3897-S Chr10 1637843 1637851 0 0 Deletion 8 HET FN3897-S Chr10 4080506 A-G 0 0 Single Base Substitution 0 HET FN3897-S Chr10 5217317 G-A 0 0 Single Base Substitution 0 HET FN3897-S Chr10 5217318 C-T 0 0 Single Base Substitution 0 HET FN3897-S Chr10 5559728 Chr7 10762024 0 Translocation 0 LOC_Os10g10140 hypothetical protein FN3897-S Chr11 13698736 Chr8 10034770 0 Translocation 0 FN3897-S Chr11 20882666 A-G 0 0 Single Base Substitution 0 Homo FN3897-S Chr11 26865288 26865288 0 0 Insertion 28 HET FN3897-S Chr11 2702995 2703001 0 0 Deletion 6 HET FN3897-S Chr11 4259604 4259605 0 0 Deletion 1 HET FN3897-S Chr12 13719929 Chr7 13401486 0 Translocation 0 LOC_Os07g23740 sterol 3-beta-glucosyltransferase, putative, expressed FN3897-S Chr12 19543623 A-G 0 0 Single Base Substitution 0 HET FN3897-S Chr12 20137614 20137628 0 0 Deletion 14 HET FN3897-S Chr12 20914499 20914503 0 0 Deletion 4 HET FN3897-S Chr12 26966677 Chr6 4303675 0 Translocation 0 FN3897-S Chr12 395411 395431 0 0 Deletion 20 HET FN3897-S Chr2 10199560 T-A 0 0 Single Base Substitution 0 Homo FN3897-S Chr2 13998022 G-T 0 0 Single Base Substitution 0 Homo FN3897-S Chr2 16295448 16295450 0 0 Deletion 2 frameshift_variant Homo LOC_Os02g27520 transposon protein, putative, unclassified, expressed FN3897-S Chr2 16391596 G-A 0 0 Single Base Substitution 0 Homo FN3897-S Chr2 16734494 A-C 0 0 Single Base Substitution 0 Homo FN3897-S Chr2 7666562 8121405 0 0 Inversion 0 LOC_Os02g14720 expressed protein FN3897-S Chr2 7666571 8121409 0 0 Inversion 0 LOC_Os02g14720 expressed protein FN3897-S Chr3 13115868 T-A 0 0 Single Base Substitution 0 Homo FN3897-S Chr3 14956792 A-G 0 0 Single Base Substitution 0 Homo FN3897-S Chr3 16817393 G-C 0 0 Single Base Substitution 0 HET FN3897-S Chr3 1838424 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g04030 HVA22, putative, expressed FN3897-S Chr3 4642205 T-G 0 0 Single Base Substitution 0 Homo FN3897-S Chr4 15325223 C-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os04g26290 retrotransposon protein, putative, unclassified, expressed FN3897-S Chr4 19045630 C-T 0 0 Single Base Substitution 0 Homo FN3897-S Chr5 13442057 C-A 0 0 Single Base Substitution 0 Homo FN3897-S Chr5 13458847 13458853 0 0 Deletion 6 HET FN3897-S Chr5 18217872 T-C 0 0 Single Base Substitution 0 Homo FN3897-S Chr5 19050524 G-A 0 0 Single Base Substitution 0 Homo FN3897-S Chr5 20369899 T-A 0 0 Single Base Substitution 0 Homo FN3897-S Chr5 5710428 5710432 0 0 Deletion 4 Homo FN3897-S Chr5 5745811 G-A 0 0 Single Base Substitution 0 Homo FN3897-S Chr5 6189093 6189111 0 0 Deletion 18 disruptive_inframe_deletion Homo LOC_Os05g11040 retrotransposon protein, putative, unclassified, expressed FN3897-S Chr5 8327082 G-A 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os05g14610 retrotransposon protein, putative, unclassified, expressed FN3897-S Chr6 18253550 18253551 0 0 Deletion 1 HET FN3897-S Chr6 20211010 G-A 0 0 Single Base Substitution 0 HET FN3897-S Chr6 25778143 G-A 0 0 Single Base Substitution 0 HET FN3897-S Chr6 27210353 C-A 0 0 Single Base Substitution 0 HET FN3897-S Chr6 27210355 G-T 0 0 Single Base Substitution 0 HET FN3897-S Chr6 4066750 T-C 0 0 Single Base Substitution 0 HET FN3897-S Chr7 12351243 12351244 0 0 Deletion 1 Homo FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23280 transposon protein, putative, unclassified, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23300 retrotransposon protein, putative, unclassified, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23310 retrotransposon protein, putative, unclassified, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23320 retrotransposon protein, putative, unclassified FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23340 male sterility protein, putative, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23354 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23370 retrotransposon protein, putative, unclassified, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23380 acyl CoA reductase, putative, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23390 expressed protein FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23400 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23410 fatty acid desaturase, putative, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23430 fatty acid desaturase, putative, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23450 ZOS7-04 - C2H2 zinc finger protein, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23460 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23470 thaumatin, putative, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23480 retrotransposon protein, putative, unclassified, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23485 expressed protein FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23494 expressed protein FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23510 expressed protein FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23520 expressed protein FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23530 hypothetical protein FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23540 retrotransposon protein, putative, unclassified, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23550 expressed protein FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23560 hypothetical protein FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23570 cytochrome P450 72A1, putative, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23580 expressed protein FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23590 expressed protein FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23600 root cap protein, putative, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23610 transposon protein, putative, CACTA, En/Spm sub-class FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23620 transposon protein, putative, CACTA, En/Spm sub-class FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23630 transposon protein, putative, CACTA, En/Spm sub-class FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23660 retrotransposon protein, putative, unclassified, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23670 expressed protein FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23680 retrotransposon protein, putative, Ty3-gypsy subclass FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23690 root cap protein 1, putative, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23700 retrotransposon protein, putative, unclassified, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23710 cytochrome P450, putative, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23720 B4-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23730 thaumatin, putative, expressed FN3897-S Chr7 13112001 13400000 0 0 Deletion 287999 LOC_Os07g23740 sterol 3-beta-glucosyltransferase, putative, expressed FN3897-S Chr7 18745419 G-T 0 0 Single Base Substitution 0 HET FN3897-S Chr7 2037667 2037668 0 0 Deletion 1 HET FN3897-S Chr7 27344955 27344956 0 0 Deletion 1 frameshift_variant Homo LOC_Os07g45820 retrotransposon protein, putative, unclassified FN3897-S Chr7 29394012 29394016 0 0 Deletion 4 Homo FN3897-S Chr8 17498743 G-A 0 0 Single Base Substitution 0 HET FN3897-S Chr8 17500565 17500574 0 0 Deletion 9 inframe_deletion HET LOC_Os08g28650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3897-S Chr8 17705338 C-T 0 0 Single Base Substitution 0 HET FN3897-S Chr8 22143860 22143866 0 0 Deletion 6 HET FN3897-S Chr8 9371464 9371468 0 0 Deletion 4 HET FN3897-S Chr9 6861022 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g12140 retrotransposon protein, putative, unclassified, expressed