FN3905-S Chr1 18610906 18610907 0 0 Deletion 1 frameshift_variant HET LOC_Os01g33800 heat shock protein DnaJ, putative, expressed FN3905-S Chr1 19528001 19556000 0 0 Deletion 27999 LOC_Os01g35270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3905-S Chr1 19528001 19556000 0 0 Deletion 27999 LOC_Os01g35280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3905-S Chr1 19528001 19556000 0 0 Deletion 27999 LOC_Os01g35290 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3905-S Chr1 19528001 19556000 0 0 Deletion 27999 LOC_Os01g35300 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3905-S Chr1 19528001 19556000 0 0 Deletion 27999 LOC_Os01g35310 expressed protein FN3905-S Chr1 19528001 19556000 0 0 Deletion 27999 LOC_Os01g35320 expressed protein FN3905-S Chr1 19528001 19556000 0 0 Deletion 27999 LOC_Os01g35330 circumsporozoite protein precursor, putative, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35370 retrotransposon protein, putative, unclassified FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35400 retrotransposon protein, putative, unclassified FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35410 transposon protein, putative, unclassified FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35420 transposon protein, putative, unclassified, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35430 retrotransposon protein, putative, unclassified FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35440 retrotransposon protein, putative, Ty3-gypsy subclass FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35460 retrotransposon protein, putative, unclassified FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35470 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35490 retrotransposon protein, putative, Ty3-gypsy subclass FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35504 retrotransposon protein, putative, unclassified, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35520 retrotransposon protein, putative, unclassified FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35530 retrotransposon protein, putative, unclassified FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35540 retrotransposon protein, putative, unclassified FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35550 retrotransposon protein, putative, unclassified FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35560 retrotransposon protein, putative, unclassified, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35580 expressed protein FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35590 expressed protein FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35600 retrotransposon protein, putative, unclassified FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35610 expressed protein FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35620 retrotransposon protein, putative, unclassified FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35630 retrotransposon, putative, centromere-specific, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35650 retrotransposon protein, putative, Ty3-gypsy subclass FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35680 retrotransposon protein, putative, unclassified FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35700 retrotransposon protein, putative, unclassified FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35710 retrotransposon protein, putative, Ty3-gypsy subclass FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35760 retrotransposon protein, putative, Ty3-gypsy subclass FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19565001 19823000 0 0 Deletion 257999 LOC_Os01g35780 retrotransposon protein, putative, unclassified, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35789 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35800 retrotransposon protein, putative, unclassified, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35810 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35820 retrotransposon protein, putative, unclassified, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35830 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35840 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35850 Ras family domain containing protein, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35860 transposon protein, putative, Mutator sub-class, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35870 hypothetical protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35880 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35890 retrotransposon protein, putative, Ty1-copia subclass FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35910 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35930 retrotransposon protein, putative, unclassified, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35950 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35960 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35970 transposon protein, putative, Mariner sub-class, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35980 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g35990 RNAse P Rpr2/Rpp21 subunit domain containing protein, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36020 retrotransposon protein, putative, unclassified, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36030 retrotransposon protein, putative, unclassified, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36060 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36064 hAT dimerisation domain-containing protein, putative, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36070 nodulin MtN3 family protein, putative, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36080 protein phosphatase 2C containing protein, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36090 DNA-damage-repair/toleration protein DRT102, putative, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36100 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36110 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36120 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36130 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36140 retrotransposon protein, putative, Ty3-gypsy subclass FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36150 retrotransposon protein, putative, Ty3-gypsy subclass FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36200 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36220 bZIP transcription factor domain containing protein, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36229 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36240 peroxidase precursor, putative, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36250 transposon protein, putative, unclassified, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36260 transposon protein, putative, unclassified, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36270 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36294 cytochrome P450, putative, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36310 retrotransposon protein, putative, unclassified, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36320 retrotransposon protein, putative, unclassified FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36330 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36340 expressed protein FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36350 cytochrome P450, putative, expressed FN3905-S Chr1 19826001 20162000 0 0 Deletion 335999 LOC_Os01g36360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr1 21673211 C-A 0 0 Single Base Substitution 0 Homo FN3905-S Chr1 41714113 T-G 0 0 Single Base Substitution 0 Homo FN3905-S Chr10 10945658 T-A 0 0 Single Base Substitution 0 HET FN3905-S Chr10 11281119 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g21910 acetyl-CoA carboxylase, putative, expressed FN3905-S Chr10 19697185 G-T 0 0 Single Base Substitution 0 HET FN3905-S Chr11 13416315 Chr3 21806999 0 Translocation 0 LOC_Os03g39250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr11 26728041 26728043 0 0 Deletion 2 HET FN3905-S Chr11 986545 Chr1 19785007 0 Translocation 0 LOC_Os01g35720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr11 986545 Chr1 19785007 0 Translocation 0 LOC_Os11g02890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3905-S Chr12 1500493 1500511 0 0 Deletion 18 HET FN3905-S Chr12 19754378 19754378 0 0 Insertion 4 HET FN3905-S Chr12 26359861 Chr4 21212459 0 Translocation 0 FN3905-S Chr2 11116893 T-C 0 0 Single Base Substitution 0 Homo FN3905-S Chr2 12143029 12143036 0 0 Deletion 7 HET FN3905-S Chr2 33968281 G-A 0 0 Single Base Substitution 0 HET FN3905-S Chr3 1843140 A-T 0 0 Single Base Substitution 0 HET FN3905-S Chr3 988470 A-G 0 0 Single Base Substitution 0 HET FN3905-S Chr4 34101932 T-A 0 0 Single Base Substitution 0 HET FN3905-S Chr5 13915570 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g24120 retrotransposon protein, putative, unclassified, expressed FN3905-S Chr5 16787219 16957913 0 0 Inversion 0 LOC_Os05g28930 integral membrane protein DUF6 containing protein, expressed FN3905-S Chr5 16787229 16957921 0 0 Inversion 0 LOC_Os05g28930 integral membrane protein DUF6 containing protein, expressed FN3905-S Chr5 29066566 29216399 0 0 Inversion 0 LOC_Os05g50910 extra-large G-protein-related, putative, expressed FN3905-S Chr5 29207001 29259000 0 0 Deletion 51999 LOC_Os05g50900 helix-loop-helix DNA-binding protein, putative, expressed FN3905-S Chr5 29207001 29259000 0 0 Deletion 51999 LOC_Os05g50910 extra-large G-protein-related, putative, expressed FN3905-S Chr5 29207001 29259000 0 0 Deletion 51999 LOC_Os05g50920 transmembrane amino acid transporter protein, putative, expressed FN3905-S Chr5 29207001 29259000 0 0 Deletion 51999 LOC_Os05g50930 RNA polymerase sigma factor, putative, expressed FN3905-S Chr5 29207001 29259000 0 0 Deletion 51999 LOC_Os05g50940 expressed protein FN3905-S Chr5 29207001 29259000 0 0 Deletion 51999 LOC_Os05g50950 pentatricopeptide repeat protein PPR986-12, putative, expressed FN3905-S Chr5 29207001 29259000 0 0 Deletion 51999 LOC_Os05g50960 polygalacturonase, putative, expressed FN3905-S Chr5 29207001 29259000 0 0 Deletion 51999 LOC_Os05g50970 protein phosphatase 2C, putative, expressed FN3905-S Chr5 29207001 29259000 0 0 Deletion 51999 LOC_Os05g50980 SET domain containing protein, expressed FN3905-S Chr5 29207001 29259000 0 0 Deletion 51999 LOC_Os05g50990 TTL3, putative, expressed FN3905-S Chr5 29256433 29261834 0 0 Inversion 0 LOC_Os05g50990 TTL3, putative, expressed FN3905-S Chr5 7943944 A-T 0 0 Single Base Substitution 0 HET FN3905-S Chr6 16598584 A-T 0 0 Single Base Substitution 0 HET FN3905-S Chr6 7587834 A-G 0 0 Single Base Substitution 0 HET FN3905-S Chr7 5646876 G-A 0 0 Single Base Substitution 0 Homo FN3905-S Chr8 8277153 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os08g13860 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3905-S Chr8 9987880 Chr7 8235911 0 Translocation 0 LOC_Os08g16370 transposon protein, putative, unclassified, expressed FN3905-S Chr9 7433704 Chr5 29261269 0 Translocation 0 LOC_Os05g50990 TTL3, putative, expressed FN3905-S Chr9 7433706 Chr5 29261630 0 Translocation 0 LOC_Os05g50990 TTL3, putative, expressed