FN3906-S Chr1 15156472 T-C 0 0 Single Base Substitution 0 HET FN3906-S Chr1 16271921 T-G 0 0 Single Base Substitution 0 HET FN3906-S Chr1 28566540 A-T 0 0 Single Base Substitution 0 Homo FN3906-S Chr1 40685653 T-A 0 0 Single Base Substitution 0 HET FN3906-S Chr1 41995244 A-C 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os01g72400 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3906-S Chr10 15053605 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g28890 retrotransposon protein, putative, unclassified, expressed FN3906-S Chr10 5486005 T-A 0 0 Single Base Substitution 0 Homo FN3906-S Chr11 18713895 18713897 0 0 Deletion 2 frameshift_variant HET LOC_Os11g31840 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3906-S Chr11 27705534 Chr5 23588676 0 Translocation 0 LOC_Os05g40160 NB-ARC domain containing protein, expressed FN3906-S Chr11 27705534 Chr5 23588676 0 Translocation 0 LOC_Os11g45790 NB-ARC domain containing protein, expressed FN3906-S Chr11 28758932 Chr8 17178870 0 Translocation 0 LOC_Os11g47600 glycosyl hydrolase, putative, expressed FN3906-S Chr11 9783639 9783639 0 0 Insertion 1 HET FN3906-S Chr12 11834253 Chr3 15244266 0 Translocation 0 LOC_Os03g26704 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3906-S Chr12 11834253 Chr3 15244266 0 Translocation 0 LOC_Os12g20270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3906-S Chr12 12029895 12029896 0 0 Deletion 1 HET FN3906-S Chr12 20409387 C-G 0 0 Single Base Substitution 0 HET FN3906-S Chr12 2387085 C-A 0 0 Single Base Substitution 0 HET FN3906-S Chr12 8548657 8548657 0 0 Insertion 6 HET FN3906-S Chr12 8954890 G-T 0 0 Single Base Substitution 0 Homo FN3906-S Chr2 17558991 G-A 0 0 Single Base Substitution 0 HET FN3906-S Chr2 3045140 C-T 0 0 Single Base Substitution 0 HET FN3906-S Chr2 34991906 A-C 0 0 Single Base Substitution 0 HET FN3906-S Chr2 8888674 8888675 0 0 Deletion 1 HET FN3906-S Chr3 16010141 16010146 0 0 Deletion 5 frameshift_variant Homo LOC_Os03g27870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3906-S Chr3 23878924 23878927 0 0 Deletion 3 HET FN3906-S Chr3 35809779 G-A 0 0 Single Base Substitution 0 HET FN3906-S Chr4 1483425 Chr3 30859299 0 Translocation 0 FN3906-S Chr4 15273890 15273890 0 0 Insertion 4 HET FN3906-S Chr4 1538725 C-T 0 0 Single Base Substitution 0 HET FN3906-S Chr4 23667291 23667292 0 0 Deletion 1 frameshift_variant HET LOC_Os04g39710 retrotransposon protein, putative, unclassified, expressed FN3906-S Chr4 24273744 C-A 0 0 Single Base Substitution 0 HET FN3906-S Chr4 2644661 C-T 0 0 Single Base Substitution 0 HET FN3906-S Chr4 2644662 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g05310 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3906-S Chr4 28947442 28947443 0 0 Deletion 1 HET FN3906-S Chr4 35206596 T-A 0 0 Single Base Substitution 0 Homo FN3906-S Chr5 12779115 G-A 0 0 Single Base Substitution 0 Homo FN3906-S Chr5 1851521 T-G 0 0 Single Base Substitution 0 HET FN3906-S Chr5 18621820 18621820 0 0 Insertion 2 HET FN3906-S Chr5 21936310 A-G 0 0 Single Base Substitution 0 Homo FN3906-S Chr5 2567681 2567681 0 0 Insertion 2 HET FN3906-S Chr5 29465616 A-T 0 0 Single Base Substitution 0 Homo FN3906-S Chr5 7406034 7406035 0 0 Deletion 1 HET FN3906-S Chr6 11989642 11989643 0 0 Deletion 1 frameshift_variant Homo LOC_Os06g20790 SAM dependent carboxyl methyltransferase, putative, expressed FN3906-S Chr6 19715107 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g33890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3906-S Chr6 28081188 T-G 0 0 Single Base Substitution 0 HET FN3906-S Chr6 29547885 Chr4 5348074 0 Translocation 0 FN3906-S Chr6 75554 75554 0 0 Insertion 1 HET FN3906-S Chr7 10991482 10991506 0 0 Deletion 24 HET FN3906-S Chr7 11200526 Chr3 25420806 0 Translocation 0 LOC_Os03g45040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3906-S Chr7 11200526 Chr3 25420806 0 Translocation 0 LOC_Os07g18900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3906-S Chr7 12351474 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os07g22100 retrotransposon protein, putative, Ty3-gypsy subclass FN3906-S Chr7 13571133 Chr1 17298369 0 Translocation 0 FN3906-S Chr7 14026266 C-T 0 0 Single Base Substitution 0 Homo FN3906-S Chr7 22813469 Chr4 23951096 0 Translocation 0 FN3906-S Chr7 25048823 25048849 0 0 Deletion 26 HET FN3906-S Chr7 2633554 2633560 0 0 Deletion 6 Homo FN3906-S Chr8 15015619 Chr6 14816504 0 Translocation 0 LOC_Os08g24810 expressed protein FN3906-S Chr8 16611515 Chr1 14561815 0 Translocation 0 LOC_Os08g27190 OsFBX288 - F-box domain containing protein, expressed FN3906-S Chr8 17868834 17868834 0 0 Insertion 4 HET FN3906-S Chr8 18831321 C-T 0 0 Single Base Substitution 0 Homo FN3906-S Chr8 8072880 A-T 0 0 Single Base Substitution 0 HET FN3906-S Chr9 20395046 A-C 0 0 Single Base Substitution 0 HET