FN3909-S Chr1 31963157 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g55480 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3909-S Chr1 39361196 G-T 0 0 Single Base Substitution 0 HET FN3909-S Chr10 18614263 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os10g34884 RIPER7 - Ripening-related family protein precursor, expressed FN3909-S Chr10 6155273 6155279 0 0 Deletion 6 HET FN3909-S Chr11 13116468 G-A 0 0 Single Base Substitution 0 Homo FN3909-S Chr11 13592005 A-G 0 0 Single Base Substitution 0 Homo FN3909-S Chr11 13964342 13964351 0 0 Deletion 9 Homo FN3909-S Chr11 15399862 T-C 0 0 Single Base Substitution 0 Homo FN3909-S Chr11 16018122 A-G 0 0 Single Base Substitution 0 Homo FN3909-S Chr11 26933441 G-A 0 0 Single Base Substitution 0 HET FN3909-S Chr11 27121678 27121678 0 0 Insertion 250 HET FN3909-S Chr11 27443439 27443440 0 0 Deletion 1 Homo FN3909-S Chr12 11592527 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g19900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr12 13262122 C-T 0 0 Single Base Substitution 0 HET FN3909-S Chr12 15390001 15476000 0 0 Deletion 85999 LOC_Os12g26340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr12 15390001 15476000 0 0 Deletion 85999 LOC_Os12g26350 expressed protein FN3909-S Chr12 15390001 15476000 0 0 Deletion 85999 LOC_Os12g26370 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3909-S Chr12 15390001 15476000 0 0 Deletion 85999 LOC_Os12g26380 dirigent, putative, expressed FN3909-S Chr12 15390001 15476000 0 0 Deletion 85999 LOC_Os12g26390 expressed protein FN3909-S Chr12 15390001 15476000 0 0 Deletion 85999 LOC_Os12g26400 retrotransposon protein, putative, unclassified, expressed FN3909-S Chr12 15390001 15476000 0 0 Deletion 85999 LOC_Os12g26410 hypothetical protein FN3909-S Chr12 15390001 15476000 0 0 Deletion 85999 LOC_Os12g26420 retrotransposon protein, putative, unclassified, expressed FN3909-S Chr12 15390001 15476000 0 0 Deletion 85999 LOC_Os12g26430 retrotransposon protein, putative, unclassified, expressed FN3909-S Chr12 15390001 15476000 0 0 Deletion 85999 LOC_Os12g26444 retrotransposon protein, putative, unclassified, expressed FN3909-S Chr12 15390001 15476000 0 0 Deletion 85999 LOC_Os12g26460 expressed protein FN3909-S Chr12 15390001 15476000 0 0 Deletion 85999 LOC_Os12g26470 aspartic proteinase nepenthesin-1 precursor, putative, expressed FN3909-S Chr12 15390001 15476000 0 0 Deletion 85999 LOC_Os12g26480 expressed protein FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26500 retrotransposon protein, putative, unclassified, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26510 expressed protein FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26520 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26530 expressed protein FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26540 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26560 retrotransposon protein, putative, unclassified, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26570 retrotransposon protein, putative, unclassified FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26580 retrotransposon protein, putative, unclassified FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26590 retrotransposon protein, putative, unclassified, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26600 transposon protein, putative, CACTA, En/Spm sub-class FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26620 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26640 retrotransposon protein, putative, unclassified FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26650 retrotransposon protein, putative, unclassified FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26660 retrotransposon protein, putative, LINE subclass, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26670 hypothetical protein FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26680 expressed protein FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26690 expressed protein FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26720 armadillo, putative, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26740 retrotransposon protein, putative, unclassified, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26810 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26820 retrotransposon protein, putative, unclassified FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26840 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26850 retrotransposon protein, putative, unclassified, expressed FN3909-S Chr12 15493001 15741000 0 0 Deletion 247999 LOC_Os12g26860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr12 20777683 Chr2 7972905 0 Translocation 0 FN3909-S Chr12 24940500 T-C 0 0 Single Base Substitution 0 HET FN3909-S Chr12 6580769 A-T 0 0 Single Base Substitution 0 HET FN3909-S Chr12 7340110 7340110 0 0 Insertion 1 HET FN3909-S Chr2 10597444 T-A 0 0 Single Base Substitution 0 HET FN3909-S Chr2 12773810 A-G 0 0 Single Base Substitution 0 HET FN3909-S Chr2 14408954 C-T 0 0 Single Base Substitution 0 HET FN3909-S Chr2 14408955 A-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g24860 retrotransposon protein, putative, unclassified, expressed FN3909-S Chr2 14838526 G-A 0 0 Single Base Substitution 0 HET FN3909-S Chr2 15381065 A-G 0 0 Single Base Substitution 0 HET FN3909-S Chr2 20241392 20241393 0 0 Deletion 1 HET FN3909-S Chr2 20697209 20697211 0 0 Deletion 2 HET FN3909-S Chr3 11705967 11705968 0 0 Deletion 1 HET FN3909-S Chr3 1572298 G-A 0 0 Single Base Substitution 0 HET FN3909-S Chr3 19306197 C-T 0 0 Single Base Substitution 0 HET FN3909-S Chr3 33594597 A-T 0 0 Single Base Substitution 0 HET FN3909-S Chr3 33977543 A-T 0 0 Single Base Substitution 0 HET FN3909-S Chr3 7774846 7819779 0 0 Inversion 0 LOC_Os03g14280 ATP-dependent Clp protease ATP-binding subunit, putative, expressed FN3909-S Chr3 7774849 7819780 0 0 Inversion 0 LOC_Os03g14280 ATP-dependent Clp protease ATP-binding subunit, putative, expressed FN3909-S Chr3 8745693 T-A 0 0 Single Base Substitution 0 HET FN3909-S Chr3 8825037 Chr2 17955708 0 Translocation 0 LOC_Os02g30200 PE-PGRS family protein, putative, expressed FN3909-S Chr4 10857757 C-T 0 0 Single Base Substitution 0 HET FN3909-S Chr4 11948630 G-T 0 0 Single Base Substitution 0 HET FN3909-S Chr4 12723246 T-A 0 0 Single Base Substitution 0 HET FN3909-S Chr4 19378588 19378588 0 0 Insertion 2 HET FN3909-S Chr4 2067626 2067626 0 0 Insertion 1 HET FN3909-S Chr4 25521780 25521783 0 0 Deletion 3 HET FN3909-S Chr4 7574878 G-A 0 0 Single Base Substitution 0 HET FN3909-S Chr4 8996999 8996999 0 0 Insertion 1 HET FN3909-S Chr5 10771367 10771369 0 0 Deletion 2 HET FN3909-S Chr5 790797 790808 0 0 Deletion 11 Homo FN3909-S Chr5 9642285 9642312 0 0 Deletion 27 Homo FN3909-S Chr5 9644989 C-T 0 0 Single Base Substitution 0 Homo FN3909-S Chr5 9647727 C-T 0 0 Single Base Substitution 0 Homo FN3909-S Chr6 14750147 G-A 0 0 Single Base Substitution 0 HET FN3909-S Chr6 27650393 T-C 0 0 Single Base Substitution 0 Homo FN3909-S Chr6 957338 Chr4 2437121 0 Translocation 0 LOC_Os04g05020 retrotransposon protein, putative, unclassified FN3909-S Chr7 13022192 T-C 0 0 Single Base Substitution 0 HET FN3909-S Chr7 13610676 C-T 0 0 Single Base Substitution 0 HET FN3909-S Chr7 17475817 17475819 0 0 Deletion 2 HET FN3909-S Chr7 5246761 G-A 0 0 Single Base Substitution 0 HET FN3909-S Chr7 5571952 6064369 0 0 Inversion 0 LOC_Os07g10390 cleavage and polyadenylation specificity factor, putative, expressed FN3909-S Chr7 5571952 6064369 0 0 Inversion 0 LOC_Os07g11020 rc - bHLH transcription factor regulating proanthocyanidin production in seeds, expressed FN3909-S Chr7 5571963 6064368 0 0 Inversion 0 LOC_Os07g10390 cleavage and polyadenylation specificity factor, putative, expressed FN3909-S Chr7 5571963 6064368 0 0 Inversion 0 LOC_Os07g11020 rc - bHLH transcription factor regulating proanthocyanidin production in seeds, expressed FN3909-S Chr7 6479877 T-G 0 0 Single Base Substitution 0 HET FN3909-S Chr7 6896816 T-A 0 0 Single Base Substitution 0 HET FN3909-S Chr8 16785510 C-T 0 0 Single Base Substitution 0 Homo FN3909-S Chr8 17404983 G-C 0 0 Single Base Substitution 0 Homo FN3909-S Chr8 17927034 Chr5 4458476 0 Translocation 0 LOC_Os05g08170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr8 17927034 Chr5 4458476 0 Translocation 0 LOC_Os08g29240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3909-S Chr8 17982730 G-A 0 0 Single Base Substitution 0 Homo FN3909-S Chr8 26096581 26096966 0 0 Inversion 0 FN3909-S Chr8 6353193 6353194 0 0 Deletion 1 Homo FN3909-S Chr8 6747875 6971703 0 0 Inversion 0 FN3909-S Chr8 9402967 9402981 0 0 Deletion 14 Homo FN3909-S Chr9 13162170 T-A 0 0 Single Base Substitution 0 HET FN3909-S Chr9 17797789 G-A 0 0 Single Base Substitution 0 HET