FN3938-S Chr1 19162895 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g34730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3938-S Chr1 4839595 4839595 0 0 Insertion 33 HET FN3938-S Chr1 9107878 C-T 0 0 Single Base Substitution 0 Homo FN3938-S Chr10 11955451 11955458 0 0 Deletion 7 Homo FN3938-S Chr10 17064628 G-A 0 0 Single Base Substitution 0 HET FN3938-S Chr10 20907248 C-A 0 0 Single Base Substitution 0 HET FN3938-S Chr11 16723574 C-A 0 0 Single Base Substitution 0 HET FN3938-S Chr11 18526251 Chr6 18877959 0 Translocation 0 LOC_Os06g32470 retrotransposon protein, putative, unclassified, expressed FN3938-S Chr11 18526251 Chr6 18877959 0 Translocation 0 LOC_Os11g31680 retrotransposon protein, putative, unclassified, expressed FN3938-S Chr11 19036640 19036654 0 0 Deletion 14 frameshift_variant HET LOC_Os11g32220 hypothetical protein FN3938-S Chr11 26139332 Chr9 13620996 0 Translocation 0 FN3938-S Chr11 27105527 Chr4 18553484 0 Translocation 0 LOC_Os04g31040 violaxanthin de-epoxidase, putative, expressed FN3938-S Chr11 4532155 5023553 0 0 Inversion 0 LOC_Os11g08569 cycloartenol synthase, putative, expressed FN3938-S Chr11 4532167 Chr2 9939004 0 Translocation 0 LOC_Os11g08569 cycloartenol synthase, putative, expressed FN3938-S Chr11 5023564 Chr2 9946422 0 Translocation 0 FN3938-S Chr12 1823813 1823813 0 0 Insertion 18 HET FN3938-S Chr12 18910985 18910993 0 0 Deletion 8 Homo FN3938-S Chr12 26091452 Chr1 17722193 0 Translocation 0 FN3938-S Chr2 14067225 A-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os02g24250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3938-S Chr2 147038 A-G 0 0 Single Base Substitution 0 HET FN3938-S Chr2 23351769 23351769 0 0 Insertion 1 HET FN3938-S Chr3 2350480 2350481 0 0 Deletion 1 Homo FN3938-S Chr3 27345028 27345028 0 0 Insertion 2 HET FN3938-S Chr4 25379829 G-A 0 0 Single Base Substitution 0 Homo FN3938-S Chr4 5530490 C-A 0 0 Single Base Substitution 0 HET FN3938-S Chr4 6418521 A-G 0 0 Single Base Substitution 0 Homo FN3938-S Chr4 7961462 7961462 0 0 Insertion 3 HET FN3938-S Chr5 10467729 C-T 0 0 Single Base Substitution 0 HET FN3938-S Chr5 14725154 14725155 0 0 Deletion 1 Homo FN3938-S Chr5 18855966 A-T 0 0 Single Base Substitution 0 HET FN3938-S Chr5 29682585 T-A 0 0 Single Base Substitution 0 HET FN3938-S Chr6 22657551 C-A 0 0 Single Base Substitution 0 Homo FN3938-S Chr6 27544066 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g45530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3938-S Chr7 16128465 A-G 0 0 Single Base Substitution 0 HET FN3938-S Chr7 17766523 A-T 0 0 Single Base Substitution 0 HET FN3938-S Chr7 18232678 A-T 0 0 Single Base Substitution 0 HET FN3938-S Chr7 22153173 A-T 0 0 Single Base Substitution 0 HET FN3938-S Chr7 27859668 G-A 0 0 Single Base Substitution 0 Homo FN3938-S Chr7 4521299 4521301 0 0 Deletion 2 Homo FN3938-S Chr7 7179441 7179441 0 0 Insertion 2 HET FN3938-S Chr8 2521428 2561244 0 0 Inversion 0 FN3938-S Chr8 25473788 T-C 0 0 Single Base Substitution 0 HET FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g04990 retrotransposon protein, putative, unclassified, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05000 retrotransposon protein, putative, Ty1-copia subclass FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05010 retrotransposon protein, putative, unclassified, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05020 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05030 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05040 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05050 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05060 retrotransposon, putative, centromere-specific, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05070 translation initiation factor IF-2, putative, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05080 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05090 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05100 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05110 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05130 retrotransposon protein, putative, Ty3-gypsy subclass FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05140 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05150 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05160 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05190 retrotransposon protein, putative, Ty3-gypsy subclass FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05210 retrotransposon protein, putative, Ty3-gypsy subclass FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05230 retrotransposon protein, putative, unclassified FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05240 retrotransposon protein, putative, unclassified, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05260 retrotransposon protein, putative, unclassified FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05270 retrotransposon protein, putative, unclassified, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05280 oxidoreductase family, NAD-binding Rossmann fold containing protein, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05290 receptor-like protein kinase 5 precursor, putative, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05300 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05310 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05320 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05330 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05340 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05360 transposon protein, putative, unclassified, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05370 conserved hypothetical protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05380 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05390 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05410 expressed protein FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05420 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3938-S Chr8 2561001 2873000 0 0 Deletion 311999 LOC_Os08g05430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3938-S Chr8 25718786 A-T 0 0 Single Base Substitution 0 HET FN3938-S Chr8 2873889 3450308 0 0 Inversion 0 FN3938-S Chr8 3456585 C-G 0 0 Single Base Substitution 0 Homo FN3938-S Chr9 12365202 12365202 0 0 Insertion 1 HET FN3938-S Chr9 12826681 12826684 0 0 Deletion 3 Homo FN3938-S Chr9 16699474 A-G 0 0 Single Base Substitution 0 HET FN3938-S Chr9 5365775 5527526 0 0 Inversion 0 FN3938-S Chr9 5365823 5565694 0 0 Inversion 0 LOC_Os09g10220 transposon protein, putative, CACTA, En/Spm sub-class, expressed