FN3979-S Chr1 14748428 G-A 0 0 Single Base Substitution 0 HET FN3979-S Chr1 15775649 C-G 0 0 Single Base Substitution 0 HET FN3979-S Chr1 17764587 17764591 0 0 Deletion 4 frameshift_variant HET LOC_Os01g32364 Os1bglu1 - beta-mannosidase/glucosidase homologue, expressed FN3979-S Chr1 28883464 28883465 0 0 Deletion 1 HET FN3979-S Chr1 32570228 A-G 0 0 Single Base Substitution 0 Homo FN3979-S Chr1 3680547 G-A 0 0 Single Base Substitution 0 HET FN3979-S Chr1 3680548 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g07640 ankyrin, putative, expressed FN3979-S Chr1 38810001 38861000 0 0 Deletion 50999 LOC_Os01g66840 pectinacetylesterase domain containing protein, expressed FN3979-S Chr1 38810001 38861000 0 0 Deletion 50999 LOC_Os01g66850 pectinacetylesterase domain containing protein, expressed FN3979-S Chr1 38810001 38861000 0 0 Deletion 50999 LOC_Os01g66860 serine/threonine protein kinase, putative, expressed FN3979-S Chr1 38810001 38861000 0 0 Deletion 50999 LOC_Os01g66870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3979-S Chr1 38810001 38861000 0 0 Deletion 50999 LOC_Os01g66890 BTBZ1 - Bric-a-Brac, Tramtrack, and Broad Complex BTB domain with TAZ zinc finger and Calmodulin-binding domains, expressed FN3979-S Chr1 38810001 38861000 0 0 Deletion 50999 LOC_Os01g66900 expressed protein FN3979-S Chr1 38810001 38861000 0 0 Deletion 50999 LOC_Os01g66910 expressed protein FN3979-S Chr1 4038464 4038473 0 0 Deletion 9 HET FN3979-S Chr1 6816638 G-A 0 0 Single Base Substitution 0 HET FN3979-S Chr1 9909699 9909700 0 0 Deletion 1 HET FN3979-S Chr10 10117511 10117519 0 0 Deletion 8 HET FN3979-S Chr10 12101135 G-A 0 0 Single Base Substitution 0 Homo FN3979-S Chr10 18308177 Chr8 6810958 0 Translocation 0 FN3979-S Chr11 11802798 C-T 0 0 Single Base Substitution 0 HET FN3979-S Chr11 16376062 A-T 0 0 Single Base Substitution 0 HET FN3979-S Chr11 22087499 G-A 0 0 Single Base Substitution 0 HET FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41300 MBTB65 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41310 MBTB66 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41320 hypothetical protein FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41330 expressed protein FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41350 MBTB67 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41360 expressed protein FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41365 expressed protein FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41370 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41380 transposon protein, putative, unclassified, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41390 expressed protein FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41400 expressed protein FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41410 expressed protein FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41420 expressed protein FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41440 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41450 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41460 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41470 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41500 NC domain-containing protein, putative, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41510 expressed protein FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41520 hypothetical protein FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41530 expressed protein FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41540 disease resistance RPP8-like protein 3, putative, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41550 expressed protein FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41560 OsFBX427 - F-box domain containing protein, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41570 OsFBX428 - F-box domain containing protein, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41580 transposon protein, putative, unclassified, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41590 expressed protein FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41600 expressed protein FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41610 40S ribosomal protein S29, putative, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41620 transposon protein, putative, unclassified, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41640 helix-loop-helix DNA-binding domain containing protein, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41650 adenylyl-sulfate kinase, putative, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41670 expressed protein FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41680 cytochrome P450, putative, expressed FN3979-S Chr11 24752001 25030000 0 0 Deletion 277999 LOC_Os11g41690 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr11 4069824 A-T 0 0 Single Base Substitution 0 HET FN3979-S Chr11 963461 C-A 0 0 Single Base Substitution 0 HET FN3979-S Chr12 12338603 Chr9 14749226 0 Translocation 0 LOC_Os12g21910 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr12 12342965 Chr9 14734412 0 Translocation 0 FN3979-S Chr12 13729806 13729812 0 0 Deletion 6 HET FN3979-S Chr12 19760294 T-A 0 0 Single Base Substitution 0 HET FN3979-S Chr12 19760295 G-A 0 0 Single Base Substitution 0 HET FN3979-S Chr12 22243474 22243474 0 0 Insertion 1 HET FN3979-S Chr2 22685396 G-C 0 0 Single Base Substitution 0 HET FN3979-S Chr2 2363305 2363310 0 0 Deletion 5 HET FN3979-S Chr2 487679 A-C 0 0 Single Base Substitution 0 HET FN3979-S Chr2 7105001 7137000 0 0 Deletion 31999 LOC_Os02g13320 expressed protein FN3979-S Chr2 7105001 7137000 0 0 Deletion 31999 LOC_Os02g13330 bet v I allergen family protein, putative, expressed FN3979-S Chr2 7105001 7137000 0 0 Deletion 31999 LOC_Os02g13340 expressed protein FN3979-S Chr2 7105001 7137000 0 0 Deletion 31999 LOC_Os02g13350 hydrolase, NUDIX family, domain containing protein, expressed FN3979-S Chr2 7105001 7137000 0 0 Deletion 31999 LOC_Os02g13360 expressed protein FN3979-S Chr2 7105001 7137000 0 0 Deletion 31999 LOC_Os02g13370 expressed protein FN3979-S Chr2 7105001 7137000 0 0 Deletion 31999 LOC_Os02g13380 early nodulin 93 ENOD93 protein, putative, expressed FN3979-S Chr3 10142874 A-G 0 0 Single Base Substitution 0 HET FN3979-S Chr3 12022289 12022299 0 0 Deletion 10 frameshift_variant HET LOC_Os03g21120 nucleoside-triphosphatase, putative, expressed FN3979-S Chr3 13026848 13026848 0 0 Insertion 2 frameshift_variant&start_lost HET LOC_Os03g22600 BTBN6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed FN3979-S Chr3 13565552 A-C 0 0 Single Base Substitution 0 Homo FN3979-S Chr3 36053924 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g63820 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr3 4767179 G-A 0 0 Single Base Substitution 0 HET FN3979-S Chr3 9307335 A-G 0 0 Single Base Substitution 0 HET FN3979-S Chr4 14597451 T-C 0 0 Single Base Substitution 0 HET FN3979-S Chr4 3348562 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g06420 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr4 3348563 C-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os04g06420 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr4 34605047 T-C 0 0 Single Base Substitution 0 HET FN3979-S Chr4 3947046 3947047 0 0 Deletion 1 HET FN3979-S Chr4 7197269 7209770 0 0 Inversion 0 LOC_Os04g13050 expressed protein FN3979-S Chr4 7197278 7209766 0 0 Inversion 0 LOC_Os04g13050 expressed protein FN3979-S Chr4 8852001 8931000 0 0 Deletion 78999 LOC_Os04g16300 retrotransposon protein, putative, unclassified FN3979-S Chr4 8852001 8931000 0 0 Deletion 78999 LOC_Os04g16314 retrotransposon, putative, centromere-specific, expressed FN3979-S Chr4 8852001 8931000 0 0 Deletion 78999 LOC_Os04g16330 retrotransposon protein, putative, unclassified FN3979-S Chr4 8852001 8931000 0 0 Deletion 78999 LOC_Os04g16340 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr4 8852001 8931000 0 0 Deletion 78999 LOC_Os04g16350 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr4 8852001 8931000 0 0 Deletion 78999 LOC_Os04g16360 retrotransposon protein, putative, Ty3-gypsy subclass FN3979-S Chr4 8852001 8931000 0 0 Deletion 78999 LOC_Os04g16370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr4 8852001 8931000 0 0 Deletion 78999 LOC_Os04g16380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr4 8852001 8931000 0 0 Deletion 78999 LOC_Os04g16390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr4 8852001 8931000 0 0 Deletion 78999 LOC_Os04g16400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr4 8852001 8931000 0 0 Deletion 78999 LOC_Os04g16410 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr4 8852001 8931000 0 0 Deletion 78999 LOC_Os04g16420 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3979-S Chr4 8852001 8931000 0 0 Deletion 78999 LOC_Os04g16430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr4 8955001 8993000 0 0 Deletion 37999 LOC_Os04g16468 retrotransposon, putative, centromere-specific FN3979-S Chr4 8955001 8993000 0 0 Deletion 37999 LOC_Os04g16480 transposon protein, putative, unclassified FN3979-S Chr4 8955001 8993000 0 0 Deletion 37999 LOC_Os04g16490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr4 8955001 8993000 0 0 Deletion 37999 LOC_Os04g16500 retrotransposon protein, putative, Ty3-gypsy subclass FN3979-S Chr4 8955001 8993000 0 0 Deletion 37999 LOC_Os04g16510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr4 8955001 8993000 0 0 Deletion 37999 LOC_Os04g16520 retrotransposon protein, putative, unclassified FN3979-S Chr4 8955001 8993000 0 0 Deletion 37999 LOC_Os04g16530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr4 9004001 9023000 0 0 Deletion 18999 LOC_Os04g16560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr4 9004001 9023000 0 0 Deletion 18999 LOC_Os04g16570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr4 9004001 9023000 0 0 Deletion 18999 LOC_Os04g16580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr4 9004001 9023000 0 0 Deletion 18999 LOC_Os04g16590 retrotransposon protein, putative, Ty3-gypsy subclass FN3979-S Chr4 9034001 9081000 0 0 Deletion 46999 LOC_Os04g16600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr4 9034001 9081000 0 0 Deletion 46999 LOC_Os04g16620 retrotransposon, putative, centromere-specific, expressed FN3979-S Chr4 9034001 9081000 0 0 Deletion 46999 LOC_Os04g16630 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr4 9034001 9081000 0 0 Deletion 46999 LOC_Os04g16640 retrotransposon, putative, centromere-specific FN3979-S Chr4 9034001 9081000 0 0 Deletion 46999 LOC_Os04g16649 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr4 9034001 9081000 0 0 Deletion 46999 LOC_Os04g16660 retrotransposon protein, putative, unclassified FN3979-S Chr4 9034001 9081000 0 0 Deletion 46999 LOC_Os04g16670 expressed protein FN3979-S Chr4 9034001 9081000 0 0 Deletion 46999 LOC_Os04g16680 fructose-1,6-bisphosphatase, putative, expressed FN3979-S Chr5 21014764 G-A 0 0 Single Base Substitution 0 HET FN3979-S Chr6 15091270 A-G 0 0 Single Base Substitution 0 HET FN3979-S Chr6 24354182 C-T 0 0 Single Base Substitution 0 HET FN3979-S Chr6 24537399 24537400 0 0 Deletion 1 HET FN3979-S Chr6 4621794 C-T 0 0 Single Base Substitution 0 HET FN3979-S Chr6 6511696 6511700 0 0 Deletion 4 HET FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18780 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18790 retrotransposon protein, putative, unclassified FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18800 retrotransposon protein, putative, unclassified FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18810 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18820 hypothetical protein FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18830 retrotransposon protein, putative, Ty3-gypsy subclass FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18840 transposon protein, putative, unclassified, expressed FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18860 expressed protein FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18874 white-brown complex homolog protein 11, putative, expressed FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18890 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18910 retrotransposon protein, putative, unclassified FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18930 expressed protein FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18944 expressed protein FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18960 GCRP14 - Glycine and cysteine rich family protein precursor, putative, expressed FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18970 retrotransposon protein, putative, unclassified, expressed FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18980 expressed protein FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g18990 LTPL40 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g19000 LTPL41 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g19020 conserved hypothetical protein FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g19030 tic22-like family domain containing protein, expressed FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g19040 glycosyl hydrolase, putative, expressed FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g19050 expressed protein FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g19060 transport protein particle component, Bet3, domain containing protein, expressed FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g19070 prefoldin, putative, expressed FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g19080 expressed protein FN3979-S Chr7 11112001 11308000 0 0 Deletion 195999 LOC_Os07g19090 zinc knuckle domain containing protein, expressed FN3979-S Chr7 11200524 Chr3 25420903 0 Translocation 0 LOC_Os03g45040 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr7 11200524 Chr3 25420903 0 Translocation 0 LOC_Os07g18900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr7 14004299 G-A 0 0 Single Base Substitution 0 HET FN3979-S Chr7 14004300 C-A 0 0 Single Base Substitution 0 HET FN3979-S Chr7 1569757 1569758 0 0 Deletion 1 HET FN3979-S Chr7 26774844 26774851 0 0 Deletion 7 HET FN3979-S Chr8 15735597 15735603 0 0 Deletion 6 HET FN3979-S Chr8 19177981 A-G 0 0 Single Base Substitution 0 HET FN3979-S Chr8 1959719 G-A 0 0 Single Base Substitution 0 Homo FN3979-S Chr8 21263705 C-A 0 0 Single Base Substitution 0 Homo FN3979-S Chr8 2672261 T-C 0 0 Single Base Substitution 0 HET FN3979-S Chr8 5715487 5715489 0 0 Deletion 2 frameshift_variant HET LOC_Os08g09900 WRKY118, expressed FN3979-S Chr8 6774001 6805000 0 0 Deletion 30999 LOC_Os08g11570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr8 6774001 6805000 0 0 Deletion 30999 LOC_Os08g11590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3979-S Chr8 6774001 6805000 0 0 Deletion 30999 LOC_Os08g11599 expressed protein FN3979-S Chr9 14734423 14749234 0 0 Inversion 0 FN3979-S Chr9 15700001 15728000 0 0 Deletion 27999 LOC_Os09g26110 expressed protein FN3979-S Chr9 19047927 T-C 0 0 Single Base Substitution 0 HET FN3979-S Chr9 2210687 C-T 0 0 Single Base Substitution 0 HET FN3979-S Chr9 22558415 A-T 0 0 Single Base Substitution 0 HET FN3979-S Chr9 2958676 2958681 0 0 Deletion 5 HET FN3979-S Chr9 3307228 G-A 0 0 Single Base Substitution 0 HET FN3979-S Chr9 7064965 C-T 0 0 Single Base Substitution 0 Homo