FN3997-S Chr1 12214672 A-G 0 0 Single Base Substitution 0 HET FN3997-S Chr1 14535519 14535519 0 0 Insertion 1 HET FN3997-S Chr1 17147110 T-C 0 0 Single Base Substitution 0 SPLICE_SITE_DONOR HET LOC_Os01g31350 retrotransposon protein, putative, unclassified, expressed FN3997-S Chr1 1739254 1739257 0 0 Deletion 3 disruptive_inframe_deletion HET LOC_Os01g04010 expressed protein FN3997-S Chr1 24662001 24687000 0 0 Deletion 24999 LOC_Os01g43200 retrotransposon protein, putative, Ty3-gypsy subclass FN3997-S Chr1 24662001 24687000 0 0 Deletion 24999 LOC_Os01g43210 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3997-S Chr1 34305972 C-T 0 0 Single Base Substitution 0 HET FN3997-S Chr1 35346361 T-A 0 0 Single Base Substitution 0 HET FN3997-S Chr1 36222809 36222813 0 0 Deletion 4 Homo FN3997-S Chr10 12213495 G-A 0 0 Single Base Substitution 0 Homo FN3997-S Chr10 17926443 G-A 0 0 Single Base Substitution 0 HET FN3997-S Chr10 20268392 A-G 0 0 Single Base Substitution 0 Homo FN3997-S Chr10 7159842 7159842 0 0 Insertion 40 inframe_insertion HET LOC_Os10g12808 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3997-S Chr12 12217741 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g21730 retrotransposon protein, putative, unclassified, expressed FN3997-S Chr12 9957165 G-A 0 0 Single Base Substitution 0 Homo FN3997-S Chr2 1402551 C-A 0 0 Single Base Substitution 0 HET FN3997-S Chr2 34566539 A-T 0 0 Single Base Substitution 0 HET FN3997-S Chr2 35218670 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os02g57470 tetratricopeptide repeat containing protein, putative, expressed FN3997-S Chr3 13502297 G-A 0 0 Single Base Substitution 0 HET FN3997-S Chr3 2445288 G-A 0 0 Single Base Substitution 0 HET FN3997-S Chr3 25386275 Chr1 531828 0 Translocation 0 FN3997-S Chr3 2684927 T-C 0 0 Single Base Substitution 0 HET FN3997-S Chr3 28940383 A-G 0 0 Single Base Substitution 0 Homo FN3997-S Chr3 29123880 29123884 0 0 Deletion 4 Homo FN3997-S Chr3 33506544 T-A 0 0 Single Base Substitution 0 HET FN3997-S Chr3 35162272 G-A 0 0 Single Base Substitution 0 Homo FN3997-S Chr3 35281954 35281956 0 0 Deletion 2 Homo FN3997-S Chr3 8531227 C-T 0 0 Single Base Substitution 0 HET FN3997-S Chr4 11225818 Chr1 13093208 0 Translocation 0 LOC_Os01g23310 retrotransposon, putative, centromere-specific FN3997-S Chr4 13224520 13224540 0 0 Deletion 20 frameshift_variant HET LOC_Os04g23220 expressed protein FN3997-S Chr4 19642777 19642780 0 0 Deletion 3 Homo FN3997-S Chr4 21253430 G-A 0 0 Single Base Substitution 0 Homo FN3997-S Chr4 2141411 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g04490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3997-S Chr4 25236936 G-A 0 0 Single Base Substitution 0 Homo FN3997-S Chr4 3350476 3350499 0 0 Deletion 23 HET FN3997-S Chr4 7238808 G-A 0 0 Single Base Substitution 0 HET FN3997-S Chr5 12037281 12037281 0 0 Insertion 1 HET FN3997-S Chr5 12990817 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g22870 PPR repeat domain containing protein, putative, expressed FN3997-S Chr5 18215725 18215790 0 0 Deletion 65 frameshift_variant HET LOC_Os05g31340 retrotransposon protein, putative, unclassified, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g31930 retrotransposon protein, putative, unclassified, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g31940 retrotransposon protein, putative, unclassified, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g31950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g31970 expressed protein FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g31990 retrotransposon protein, putative, unclassified FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32000 transposon protein, putative, unclassified FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32010 hypothetical protein FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32020 expressed protein FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32030 transposon protein, putative, unclassified, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32040 retrotransposon protein, putative, unclassified, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32060 expressed protein FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32070 LRP1, putative, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32080 retrotransposon protein, putative, unclassified FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32090 expressed protein FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32100 expressed protein FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32110 COBRA, putative, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32120 alpha 1,3-xylosyltransferase, putative, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32130 expressed protein FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32140 NAD dependent epimerase/dehydratase family protein, putative, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32150 expressed protein FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32160 expressed protein FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32170 TKL_IRAK_CR4L.5 - The CR4L subfamily has homology with Crinkly4, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32180 acetyltransferase, GNAT family, putative, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32190 tungus CG8253-PA, putative, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32200 expressed protein FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32210 NAD kinase, putative, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32220 L1P family of ribosomal proteins domain containing protein, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32230 expressed protein FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32240 expressed protein FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32250 expressed protein FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32260 expressed protein FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32270 AP2 domain containing protein, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32290 retrotransposon protein, putative, Ty1-copia subclass, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32300 expressed protein FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32310 LSM domain containing protein, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32320 integral membrane transporter family protein, putative, expressed FN3997-S Chr5 18596001 18851000 0 0 Deletion 254999 LOC_Os05g32330 endonuclease/exonuclease/phosphatase family domain containing protein, expressed FN3997-S Chr5 3266534 C-T 0 0 Single Base Substitution 0 HET FN3997-S Chr5 3491691 Chr1 6530423 0 Translocation 0 LOC_Os01g11990 expressed protein FN3997-S Chr5 3491691 Chr1 6530423 0 Translocation 0 LOC_Os05g06700 expressed protein FN3997-S Chr5 3491700 Chr1 6531570 0 Translocation 0 LOC_Os01g11990 expressed protein FN3997-S Chr5 3491700 Chr1 6531570 0 Translocation 0 LOC_Os05g06700 expressed protein FN3997-S Chr5 7084480 Chr1 5485848 0 Translocation 0 LOC_Os01g10410 transposon protein, putative, unclassified FN3997-S Chr5 7084480 Chr1 5485848 0 Translocation 0 LOC_Os05g12320 nodulin MtN3 family protein, putative, expressed FN3997-S Chr6 16124596 C-T 0 0 Single Base Substitution 0 HET FN3997-S Chr6 17212213 17212218 0 0 Deletion 5 frameshift_variant HET LOC_Os06g29880 expressed protein FN3997-S Chr6 17549460 C-T 0 0 Single Base Substitution 0 HET FN3997-S Chr6 21361859 Chr1 18784278 0 Translocation 0 FN3997-S Chr6 22433238 22433239 0 0 Deletion 1 HET FN3997-S Chr6 23081267 A-T 0 0 Single Base Substitution 0 Homo FN3997-S Chr6 27189136 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g44950 retrotransposon protein, putative, unclassified, expressed FN3997-S Chr6 27189540 27189544 0 0 Deletion 4 frameshift_variant Homo LOC_Os06g44950 retrotransposon protein, putative, unclassified, expressed FN3997-S Chr6 30582146 30582153 0 0 Deletion 7 HET FN3997-S Chr7 13236653 Chr5 9247535 0 Translocation 0 LOC_Os07g23440 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN3997-S Chr7 14428494 14428496 0 0 Deletion 2 HET FN3997-S Chr7 16367360 16367362 0 0 Deletion 2 Homo FN3997-S Chr7 17505771 T-C 0 0 Single Base Substitution 0 Homo FN3997-S Chr7 21025673 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g35100 retrotransposon protein, putative, unclassified, expressed FN3997-S Chr7 23368395 23368396 0 0 Deletion 1 HET FN3997-S Chr7 26712272 Chr4 33521052 0 Translocation 0 FN3997-S Chr7 27268005 27268006 0 0 Deletion 1 Homo FN3997-S Chr7 7127625 Chr5 7084398 0 Translocation 0 LOC_Os05g12320 nodulin MtN3 family protein, putative, expressed FN3997-S Chr8 17086526 17086527 0 0 Deletion 1 Homo FN3997-S Chr8 1816990 G-A 0 0 Single Base Substitution 0 Homo FN3997-S Chr8 5998195 Chr1 8158813 0 Translocation 0 LOC_Os08g10300 SHR5-receptor-like kinase, putative, expressed FN3997-S Chr8 5998217 Chr1 8120829 0 Translocation 0 LOC_Os08g10300 SHR5-receptor-like kinase, putative, expressed FN3997-S Chr8 6522001 6557000 0 0 Deletion 34999 LOC_Os08g11090 retrotransposon protein, putative, unclassified, expressed FN3997-S Chr8 6522001 6557000 0 0 Deletion 34999 LOC_Os08g11100 retrotransposon, putative, centromere-specific FN3997-S Chr8 6522001 6557000 0 0 Deletion 34999 LOC_Os08g11110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN3997-S Chr8 6522001 6557000 0 0 Deletion 34999 LOC_Os08g11120 retrotransposon protein, putative, unclassified, expressed FN3997-S Chr8 6522001 6557000 0 0 Deletion 34999 LOC_Os08g11130 retrotransposon protein, putative, unclassified, expressed FN3997-S Chr8 6522001 6557000 0 0 Deletion 34999 LOC_Os08g11140 retrotransposon protein, putative, unclassified, expressed FN3997-S Chr8 6522001 6557000 0 0 Deletion 34999 LOC_Os08g11150 retrotransposon protein, putative, unclassified, expressed FN3997-S Chr8 6973838 6973839 0 0 Deletion 1 HET FN3997-S Chr9 20546969 Chr6 23626448 0 Translocation 0 LOC_Os09g35720 generative cell specific-1, putative, expressed FN3997-S Chr9 4772039 G-C 0 0 Single Base Substitution 0 HET FN3997-S Chr9 5579344 Chr1 949480 0 Translocation 0 LOC_Os01g02740 retrotransposon protein, putative, unclassified, expressed FN3997-S Chr9 5579344 Chr1 949480 0 Translocation 0 LOC_Os09g10240 retrotransposon protein, putative, unclassified, expressed