FN4040-S Chr1 17975954 17975973 0 0 Deletion 19 Homo FN4040-S Chr1 21786480 G-A 0 0 Single Base Substitution 0 HET FN4040-S Chr1 32723184 32723184 0 0 Insertion 1 HET FN4040-S Chr10 12241936 T-G 0 0 Single Base Substitution 0 HET FN4040-S Chr10 21767175 C-G 0 0 Single Base Substitution 0 Homo FN4040-S Chr10 2580103 2580103 0 0 Insertion 5 HET FN4040-S Chr10 2701186 Chr1 39381271 0 Translocation 0 LOC_Os10g05470 expressed protein FN4040-S Chr10 752229 752229 0 0 Insertion 1 frameshift_variant HET LOC_Os10g02190 retrotransposon protein, putative, unclassified, expressed FN4040-S Chr10 9559576 G-T 0 0 Single Base Substitution 0 Homo FN4040-S Chr10 9559577 G-T 0 0 Single Base Substitution 0 Homo FN4040-S Chr10 9740804 9740809 0 0 Deletion 5 frameshift_variant HET LOC_Os10g19130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4040-S Chr11 11477660 G-A 0 0 Single Base Substitution 0 HET FN4040-S Chr11 21235834 21483541 0 0 Inversion 0 LOC_Os11g36430 zinc finger, C3HC4 type domain containing protein, expressed FN4040-S Chr11 21235851 21495647 0 0 Inversion 0 LOC_Os11g36460 SMC-related protein MSS2, putative, expressed FN4040-S Chr11 21483001 21495000 0 0 Deletion 11999 LOC_Os11g36430 zinc finger, C3HC4 type domain containing protein, expressed FN4040-S Chr11 21483001 21495000 0 0 Deletion 11999 LOC_Os11g36440 amine oxidase, flavin-containing, domain containing protein, expressed FN4040-S Chr11 21483001 21495000 0 0 Deletion 11999 LOC_Os11g36450 OsFBO15 - F-box and other domain containing protein, expressed FN4040-S Chr11 21483001 21495000 0 0 Deletion 11999 LOC_Os11g36460 SMC-related protein MSS2, putative, expressed FN4040-S Chr11 23690217 C-T 0 0 Single Base Substitution 0 Homo FN4040-S Chr11 23768054 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os11g39870 retrotransposon protein, putative, unclassified, expressed FN4040-S Chr11 28256119 Chr2 13043193 0 Translocation 0 LOC_Os11g47030 receptor protein kinase, putative, expressed FN4040-S Chr12 10619740 G-T 0 0 Single Base Substitution 0 Homo FN4040-S Chr12 1089311 1544437 0 0 Inversion 0 LOC_Os12g03790 rhamnogalacturonate lyase, putative, expressed FN4040-S Chr12 1089320 1544470 0 0 Inversion 0 LOC_Os12g03790 rhamnogalacturonate lyase, putative, expressed FN4040-S Chr12 1216064 Chr5 23978957 0 Translocation 0 LOC_Os05g40890 expressed protein FN4040-S Chr12 1216064 Chr5 23978957 0 Translocation 0 LOC_Os12g03180 Mad3/BUB1 homology region 1 domain containing protein, expressed FN4040-S Chr12 15965546 C-G 0 0 Single Base Substitution 0 Homo FN4040-S Chr12 18707997 Chr1 22266837 0 Translocation 0 FN4040-S Chr12 24160557 Chr3 8413098 0 Translocation 0 LOC_Os12g39250 expressed protein FN4040-S Chr2 14522161 14522162 0 0 Deletion 1 frameshift_variant HET LOC_Os02g25040 retrotransposon protein, putative, unclassified, expressed FN4040-S Chr2 16159338 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g27420 transposon protein, putative, unclassified, expressed FN4040-S Chr3 13009163 T-A 0 0 Single Base Substitution 0 HET FN4040-S Chr3 18016682 G-A 0 0 Single Base Substitution 0 Homo FN4040-S Chr3 19564324 19564479 0 0 Deletion 155 HET FN4040-S Chr3 35098255 35098255 0 0 Insertion 1 frameshift_variant HET LOC_Os03g61910 retrotransposon protein, putative, unclassified, expressed FN4040-S Chr4 10893001 10899000 0 0 Deletion 5999 LOC_Os04g19570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4040-S Chr4 10893001 10899000 0 0 Deletion 5999 LOC_Os04g19580 retrotransposon protein, putative, unclassified, expressed FN4040-S Chr4 17239576 G-C 0 0 Single Base Substitution 0 HET FN4040-S Chr4 29551232 29551348 0 0 Deletion 116 HET FN4040-S Chr4 3844939 Chr3 13382505 0 Translocation 0 FN4040-S Chr4 7452431 7452431 0 0 Insertion 1 HET FN4040-S Chr5 21097492 A-T 0 0 Single Base Substitution 0 HET FN4040-S Chr5 22352001 22414000 0 0 Deletion 61999 LOC_Os05g38120 homeodomain protein, putative, expressed FN4040-S Chr5 22352001 22414000 0 0 Deletion 61999 LOC_Os05g38130 expressed protein FN4040-S Chr5 22352001 22414000 0 0 Deletion 61999 LOC_Os05g38140 basic helix-loop-helix DND-binding domain containing protein, expressed FN4040-S Chr5 22352001 22414000 0 0 Deletion 61999 LOC_Os05g38150 amino acid kinase, putative, expressed FN4040-S Chr5 22352001 22414000 0 0 Deletion 61999 LOC_Os05g38160 prenylated rab acceptor, putative, expressed FN4040-S Chr5 22352001 22414000 0 0 Deletion 61999 LOC_Os05g38170 phosphoribosyl transferase, putative, expressed FN4040-S Chr5 22352001 22414000 0 0 Deletion 61999 LOC_Os05g38180 Yip1 domain containing protein, expressed FN4040-S Chr5 22352001 22414000 0 0 Deletion 61999 LOC_Os05g38190 pentatricopeptide, putative, expressed FN4040-S Chr5 22352001 22414000 0 0 Deletion 61999 LOC_Os05g38210 mitochondrial glycoprotein, putative, expressed FN4040-S Chr5 22352001 22414000 0 0 Deletion 61999 LOC_Os05g38219 expressed protein FN4040-S Chr5 22352001 22414000 0 0 Deletion 61999 LOC_Os05g38230 oxidoreductase, aldo/keto reductase family protein, putative, expressed FN4040-S Chr5 22425001 22471000 0 0 Deletion 45999 LOC_Os05g38250 membrane associated DUF588 domain containing protein, putative, expressed FN4040-S Chr5 22425001 22471000 0 0 Deletion 45999 LOC_Os05g38260 retrotransposon protein, putative, unclassified, expressed FN4040-S Chr5 22425001 22471000 0 0 Deletion 45999 LOC_Os05g38264 expressed protein FN4040-S Chr5 22425001 22471000 0 0 Deletion 45999 LOC_Os05g38270 regulator of chromosome condensation, putative, expressed FN4040-S Chr5 22425001 22471000 0 0 Deletion 45999 LOC_Os05g38280 expressed protein FN4040-S Chr5 22425001 22471000 0 0 Deletion 45999 LOC_Os05g38290 protein phosphatase 2C, putative, expressed FN4040-S Chr5 22425001 22471000 0 0 Deletion 45999 LOC_Os05g38300 expressed protein FN4040-S Chr5 22425001 22471000 0 0 Deletion 45999 LOC_Os05g38310 ubiquitin family protein, putative, expressed FN4040-S Chr5 22425001 22471000 0 0 Deletion 45999 LOC_Os05g38320 avr9/Cf-9 rapidly elicited protein, putative, expressed FN4040-S Chr5 22425001 22471000 0 0 Deletion 45999 LOC_Os05g38330 NDP1, putative, expressed FN4040-S Chr5 23004072 G-T 0 0 Single Base Substitution 0 HET FN4040-S Chr5 23445302 C-A 0 0 Single Base Substitution 0 HET FN4040-S Chr5 26137852 C-T 0 0 Single Base Substitution 0 STOP_GAINED Homo LOC_Os05g44960 expressed protein FN4040-S Chr5 3380647 G-T 0 0 Single Base Substitution 0 Homo FN4040-S Chr5 3492712 3492718 0 0 Deletion 6 Homo FN4040-S Chr5 3876777 C-T 0 0 Single Base Substitution 0 HET FN4040-S Chr5 5212063 Chr1 19483686 0 Translocation 0 LOC_Os01g35200 transposon protein, putative, CACTA, En/Spm sub-class FN4040-S Chr5 5212063 Chr1 19483686 0 Translocation 0 LOC_Os05g09330 transposon protein, putative, CACTA, En/Spm sub-class FN4040-S Chr6 24473194 G-T 0 0 Single Base Substitution 0 HET FN4040-S Chr6 24473196 A-C 0 0 Single Base Substitution 0 HET FN4040-S Chr7 11300559 11300586 0 0 Deletion 27 HET FN4040-S Chr7 118101 118109 0 0 Deletion 8 HET FN4040-S Chr7 14009343 Chr6 21785316 0 Translocation 0 LOC_Os07g24620 retrotransposon protein, putative, unclassified, expressed FN4040-S Chr7 14056065 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g24700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4040-S Chr7 28750318 28750320 0 0 Deletion 2 HET FN4040-S Chr7 3738673 Chr3 22228961 0 Translocation 0 FN4040-S Chr8 6745676 G-A 0 0 Single Base Substitution 0 HET FN4040-S Chr9 15428300 15428300 0 0 Insertion 4 HET FN4040-S Chr9 16198267 16198284 0 0 Deletion 17 Homo FN4040-S Chr9 20568938 20568944 0 0 Deletion 6 disruptive_inframe_deletion Homo LOC_Os09g35760 homeobox and START domains containing protein, putative, expressed FN4040-S Chr9 20901199 C-T 0 0 Single Base Substitution 0 HET FN4040-S Chr9 5495450 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os09g10080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4040-S Chr9 5748486 5748486 0 0 Insertion 1 HET FN4040-S Chr9 8941257 Chr1 30237136 0 Translocation 0