FN406-S Chr1 10357849 10357850 0 0 Deletion 1 FN406-S Chr1 15850010 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN406-S Chr1 15850011 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28670 hypothetical protein FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28680 WD domain, G-beta repeat domain containing protein, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28690 nucleoporin autopeptidase domain containing protein, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28700 hypothetical protein FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28710 expressed protein FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28720 hypothetical protein FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28730 protein kinase domain containing protein, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28740 transposon protein, putative, unclassified, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28744 retrotransposon protein, putative, unclassified, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28750 retrotransposon, putative, centromere-specific FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28760 retrotransposon protein, putative, Ty1-copia subclass, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28770 hypothetical protein FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28780 hypothetical protein FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28790 PRAS-rich protein, putative, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28800 retrotransposon protein, putative, unclassified FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28810 expressed protein FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28820 retrotransposon, putative, centromere-specific, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28830 expressed protein FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28840 C4-dicarboxylate transporter/malic acid transport protein, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28850 expressed protein FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28870 retrotransposon protein, putative, unclassified, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28882 retrotransposon protein, putative, unclassified, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28894 retrotransposon protein, putative, unclassified FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28910 retrotransposon protein, putative, unclassified, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28920 retrotransposon, putative, centromere-specific, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28930 expressed protein FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28940 hypothetical protein FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28980 proton-dependent oligopeptide transport, putative, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g28989 expressed protein FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29000 retrotransposon, putative, centromere-specific, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29020 retrotransposon, putative, centromere-specific, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29030 retrotransposon protein, putative, unclassified, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29040 retrotransposon protein, putative, unclassified, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29050 retrotransposon protein, putative, unclassified, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29060 transposon protein, putative, unclassified FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29070 retrotransposon protein, putative, unclassified FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29080 retrotransposon protein, putative, unclassified, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29090 retrotransposon protein, putative, unclassified FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29100 retrotransposon protein, putative, unclassified, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29104 expressed protein FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29110 retrotransposon protein, putative, unclassified, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29120 retrotransposon, putative, centromere-specific FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29130 retrotransposon, putative, centromere-specific FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29140 retrotransposon protein, putative, unclassified, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29150 cytochrome P450 72A1, putative, expressed FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29160 retrotransposon protein, putative, Ty1-copia subclass FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29170 retrotransposon protein, putative, Ty1-copia subclass FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29180 expressed protein FN406-S Chr1 16042001 16361000 0 0 Deletion 319000 LOC_Os01g29190 retrotransposon protein, putative, unclassified, expressed FN406-S Chr1 28399913 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN406-S Chr1 40334988 40334989 0 0 Deletion 1 LOC_Os01g69830 OsSPL2 - SBP-box gene family member, expressed FN406-S Chr10 6294588 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN406-S Chr10 8605251 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN406-S Chr11 11506565 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN406-S Chr11 1345267 Chr8 6074017 0 Translocation 0 LOC_Os08g10360 retrotransposon protein, putative, unclassified, expressed FN406-S Chr11 17265683 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN406-S Chr11 1883491 1883506 0 0 Deletion 15 FN406-S Chr11 28835661 28835661 0 0 Insertion 2 FN406-S Chr11 4381148 4381156 0 0 Deletion 8 LOC_Os11g08314 methyltransferase, putative, expressed FN406-S Chr11 5627946 11507304 0 0 Inversion 5879358 LOC_Os11g10370 OsFBX418 - F-box domain containing protein, expressed FN406-S Chr11 7872054 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN406-S Chr11 8142189 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN406-S Chr12 11290795 11290799 0 0 Deletion 4 FN406-S Chr12 12259471 A-C 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN406-S Chr12 13038512 13038531 0 0 Deletion 19 FN406-S Chr2 10646883 10667757 0 0 Deletion 20874 LOC_Os02g18330 retrotransposon protein, putative, Ty1-copia subclass, expressed FN406-S Chr2 10646883 10667757 0 0 Deletion 20874 LOC_Os02g18340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN406-S Chr2 12127984 12127986 0 0 Deletion 2 LOC_Os02g20560 fasciclin domain containing protein, expressed FN406-S Chr2 1647309 1647310 0 0 Deletion 1 FN406-S Chr2 18351510 A-G 0 0 Single Base Substitution 0 INTRON HET FN406-S Chr2 18876068 C-A 0 0 Single Base Substitution 0 INTRON HET FN406-S Chr2 21575586 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN406-S Chr2 3312474 G-A 0 0 Single Base Substitution 0 INTRON HET FN406-S Chr2 5569593 Chr1 16361742 0 Translocation 0 LOC_Os01g29200 transposon protein, putative, unclassified FN406-S Chr2 5569593 Chr1 16361742 0 Translocation 0 LOC_Os02g10590 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed FN406-S Chr2 5569597 5925281 0 0 Inversion 355684 LOC_Os02g10590 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed FN406-S Chr2 5569597 5925281 0 0 Inversion 355684 LOC_Os02g11060 WD domain, G-beta repeat domain containing protein, expressed FN406-S Chr3 12933507 12933508 0 0 Deletion 1 FN406-S Chr3 27268352 27268352 0 0 Insertion 1 FN406-S Chr3 34303123 34303125 0 0 Deletion 2 FN406-S Chr3 35820059 35820065 0 0 Deletion 6 FN406-S Chr3 36012295 36012295 0 0 Insertion 6 FN406-S Chr3 9429633 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN406-S Chr4 21791373 21791375 0 0 Deletion 2 FN406-S Chr4 22403001 22458000 0 0 Deletion 55000 LOC_Os04g37680 alpha/beta hydrolase fold, putative, expressed FN406-S Chr4 22403001 22458000 0 0 Deletion 55000 LOC_Os04g37690 RNA recognition motif containing protein, putative, expressed FN406-S Chr4 22403001 22458000 0 0 Deletion 55000 LOC_Os04g37700 expressed protein FN406-S Chr4 22403001 22458000 0 0 Deletion 55000 LOC_Os04g37710 serine hydrolase domain containing protein, expressed FN406-S Chr4 22403001 22458000 0 0 Deletion 55000 LOC_Os04g37720 pentatricopeptide, putative, expressed FN406-S Chr4 22403001 22458000 0 0 Deletion 55000 LOC_Os04g37730 RING-H2 finger protein ATL3B precursor, putative, expressed FN406-S Chr4 22403001 22458000 0 0 Deletion 55000 LOC_Os04g37740 zinc finger, C3HC4 type domain containing protein, expressed FN406-S Chr4 22403001 22458000 0 0 Deletion 55000 LOC_Os04g37750 expressed protein FN406-S Chr4 22403001 22458000 0 0 Deletion 55000 LOC_Os04g37760 expressed protein FN406-S Chr4 22403001 22458000 0 0 Deletion 55000 LOC_Os04g37770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN406-S Chr4 22456194 22456209 0 0 Deletion 15 FN406-S Chr4 6287019 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g11500 retrotransposon protein, putative, unclassified, expressed FN406-S Chr4 7360245 7360245 0 0 Insertion 2 FN406-S Chr4 8451286 8451287 0 0 Deletion 1 FN406-S Chr5 27519576 27519577 0 0 Deletion 1 FN406-S Chr6 14749577 G-A 0 0 Single Base Substitution 0 INTRON HET FN406-S Chr6 24815468 24815481 0 0 Deletion 13 FN406-S Chr6 25322197 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07190 RNA polymerase Rpb7, N-terminal domain containing protein, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07200 syntaxin, putative, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07210 ribonucleoside-diphosphate reductase large subunit, putative, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07220 LTPL128 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07230 tyrosine protein kinase domain containing protein, putative, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07240 X8 domain containing protein, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07250 jacalin-like lectin domain containing protein, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07260 OsWAK62 - OsWAK short gene, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07270 expressed protein FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07280 tubulin beta-1 chain, putative, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07300 jacalin-like lectin domain containing protein, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07320 retrotransposon protein, putative, unclassified, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07330 OsWAK63 - OsWAK receptor-like protein kinase, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07340 hypothetical protein FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07350 RNA-binding motif protein, putative, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07360 expressed protein FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07370 transposon protein, putative, unclassified, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07380 OsFBX188 - F-box domain containing protein, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07400 retrotransposon protein, putative, unclassified, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07410 hypothetical protein FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07420 retrotransposon protein, putative, unclassified, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07430 OsFBX189 - F-box domain containing protein, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07440 transposon protein, putative, unclassified, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07450 F-box protein interaction domain containing protein FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07460 OsFBX190 - F-box domain containing protein, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07470 expressed protein FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07474 tetratricopeptide repeat domain containing protein, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07480 CDK-activating kinase assembly factor MAT1 family protein, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07490 HIRAN domain containing protein, putative, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07500 retrotransposon protein, putative, unclassified, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07510 retrotransposon protein, putative, unclassified FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07520 retrotransposon protein, putative, Ty3-gypsy subclass FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07530 retrotransposon protein, putative, unclassified, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07540 WD-40 repeat family protein, putative, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07550 PPR repeat domain containing protein, putative, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07560 OsCML30 - Calmodulin-related calcium sensor protein, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07570 transposon protein, putative, unclassified, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07580 expressed protein FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07590 inactive receptor kinase At2g26730 precursor, putative, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07600 uncharacterized glycosyltransferase, putative, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07620 expressed protein FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07630 26S protease regulatory subunit 6A, putative, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07640 myb-like DNA-binding domain, SHAQKYF class family protein, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07650 myb-like DNA-binding domain, SHAQKYF class family protein, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07660 myb-like DNA-binding domain, SHAQKYF class family protein, expressed FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07670 expressed protein FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07690 expressed protein FN406-S Chr6 3441001 3725000 0 0 Deletion 284000 LOC_Os06g07700 expressed protein FN406-S Chr6 8194013 8194014 0 0 Deletion 1 FN406-S Chr6 8337778 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN406-S Chr6 8338827 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN406-S Chr6 987707 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN406-S Chr7 11319117 11319117 0 0 Insertion 2 FN406-S Chr7 18592889 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN406-S Chr7 23386232 23386232 0 0 Insertion 2 FN406-S Chr7 26380188 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN406-S Chr7 29479561 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN406-S Chr7 4556916 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN406-S Chr8 1292606 1388750 0 0 Deletion 96144 LOC_Os08g02970 expressed protein FN406-S Chr8 1292606 1388750 0 0 Deletion 96144 LOC_Os08g02980 retrotransposon protein, putative, unclassified, expressed FN406-S Chr8 1292606 1388750 0 0 Deletion 96144 LOC_Os08g02990 retrotransposon protein, putative, unclassified, expressed FN406-S Chr8 1292606 1388750 0 0 Deletion 96144 LOC_Os08g02996 receptor-like kinase, putative, expressed FN406-S Chr8 1292606 1388750 0 0 Deletion 96144 LOC_Os08g03002 lectin-like receptor kinase 1, putative, expressed FN406-S Chr8 1292606 1388750 0 0 Deletion 96144 LOC_Os08g03010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN406-S Chr8 1292606 1388750 0 0 Deletion 96144 LOC_Os08g03020 lectin-like receptor kinase 1, putative, expressed FN406-S Chr8 1292606 1388750 0 0 Deletion 96144 LOC_Os08g03030 retrotransposon protein, putative, Ty1-copia subclass, expressed FN406-S Chr8 1292606 1388750 0 0 Deletion 96144 LOC_Os08g03040 expressed protein FN406-S Chr8 1292606 1388750 0 0 Deletion 96144 LOC_Os08g03050 hypothetical protein FN406-S Chr8 1292606 1388750 0 0 Deletion 96144 LOC_Os08g03060 expressed protein FN406-S Chr8 1292606 1388750 0 0 Deletion 96144 LOC_Os08g03070 lectin-like receptor kinase 1, putative, expressed FN406-S Chr8 1292606 1388750 0 0 Deletion 96144 LOC_Os08g03080 retrotransposon protein, putative, unclassified, expressed FN406-S Chr8 4522464 4522470 0 0 Deletion 6 FN406-S Chr8 5894043 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN406-S Chr8 9385584 T-C 0 0 Single Base Substitution 0 INTRON HET FN406-S Chr9 15911523 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN406-S Chr9 19313276 19313277 0 0 Deletion 1