FN4066-S Chr1 21442377 G-A 0 0 Single Base Substitution 0 Homo FN4066-S Chr1 30340417 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g52740 expressed protein FN4066-S Chr1 32381389 G-A 0 0 Single Base Substitution 0 HET FN4066-S Chr1 4109505 4109507 0 0 Deletion 2 Homo FN4066-S Chr1 43185494 C-T 0 0 Single Base Substitution 0 HET FN4066-S Chr1 9861711 9861714 0 0 Deletion 3 Homo FN4066-S Chr10 19257694 A-C 0 0 Single Base Substitution 0 HET FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08520 hypothetical protein FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08530 expressed protein FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08540 cytochrome P450, putative, expressed FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08550 enolase, putative, expressed FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08560 retrotransposon protein, putative, Ty3-gypsy subclass FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08570 RNA recognition motif family protein, expressed FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08580 FAD binding domain of DNA photolyase domain containing protein, expressed FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08590 expressed protein FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08599 expressed protein FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08610 expressed protein FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08620 chalcone and stilbene synthases, putative, expressed FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08630 expressed protein FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08640 expressed protein FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08660 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08670 chalcone synthase, putative, expressed FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08680 conserved hypothetical protein FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08690 retrotransposon protein, putative, unclassified, expressed FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08696 retrotransposon protein, putative, Ty3-gypsy subclass FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08702 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4066-S Chr10 4617001 4732000 0 0 Deletion 114999 LOC_Os10g08710 chalcone synthase, putative, expressed FN4066-S Chr10 4735316 5019050 0 0 Inversion 0 LOC_Os10g09280 retrotransposon protein, putative, unclassified, expressed FN4066-S Chr11 16531075 G-A 0 0 Single Base Substitution 0 HET FN4066-S Chr11 28168665 Chr5 29598156 0 Translocation 0 LOC_Os05g51620 expressed protein FN4066-S Chr11 3320032 A-T 0 0 Single Base Substitution 0 Homo FN4066-S Chr11 3320033 C-T 0 0 Single Base Substitution 0 Homo FN4066-S Chr11 3320091 3320120 0 0 Deletion 29 Homo FN4066-S Chr12 15191193 Chr4 18885976 0 Translocation 0 FN4066-S Chr12 17128902 Chr3 27794630 0 Translocation 0 FN4066-S Chr12 24333105 Chr6 1179153 0 Translocation 0 FN4066-S Chr12 4189904 G-C 0 0 Single Base Substitution 0 HET FN4066-S Chr12 4416697 Chr8 18415250 0 Translocation 0 LOC_Os08g29980 retrotransposon protein, putative, unclassified, expressed FN4066-S Chr12 5481573 A-T 0 0 Single Base Substitution 0 HET FN4066-S Chr12 712519 712532 0 0 Deletion 13 HET FN4066-S Chr12 7544467 Chr7 15462258 0 Translocation 0 FN4066-S Chr2 14237962 14237972 0 0 Deletion 10 frameshift_variant Homo LOC_Os02g24570 retrotransposon protein, putative, unclassified FN4066-S Chr2 17526731 C-T 0 0 Single Base Substitution 0 Homo FN4066-S Chr2 20342157 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g34040 retrotransposon protein, putative, Ty1-copia subclass, expressed FN4066-S Chr2 33112546 T-C 0 0 Single Base Substitution 0 HET FN4066-S Chr2 33112553 A-G 0 0 Single Base Substitution 0 HET FN4066-S Chr2 7458562 7458562 0 0 Insertion 7 HET FN4066-S Chr3 11413443 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g20190 pentatricopeptide, putative, expressed FN4066-S Chr3 13208300 13208313 0 0 Deletion 13 frameshift_variant Homo LOC_Os03g22850 retrotransposon protein, putative, unclassified, expressed FN4066-S Chr3 17763771 G-A 0 0 Single Base Substitution 0 HET FN4066-S Chr3 30924280 30924280 0 0 Insertion 226 HET FN4066-S Chr3 32400349 Chr1 39420088 0 Translocation 0 LOC_Os03g56890 expressed protein FN4066-S Chr3 35471223 35471231 0 0 Deletion 8 Homo FN4066-S Chr4 10724103 C-T 0 0 Single Base Substitution 0 HET FN4066-S Chr4 3426001 3503000 0 0 Deletion 76999 LOC_Os04g06500 expressed protein FN4066-S Chr4 3426001 3503000 0 0 Deletion 76999 LOC_Os04g06540 retrotransposon protein, putative, unclassified FN4066-S Chr4 3426001 3503000 0 0 Deletion 76999 LOC_Os04g06550 retrotransposon, putative, centromere-specific, expressed FN4066-S Chr4 3426001 3503000 0 0 Deletion 76999 LOC_Os04g06560 retrotransposon protein, putative, unclassified FN4066-S Chr4 3426001 3503000 0 0 Deletion 76999 LOC_Os04g06580 retrotransposon protein, putative, unclassified FN4066-S Chr4 3426001 3503000 0 0 Deletion 76999 LOC_Os04g06590 expressed protein FN4066-S Chr4 3426001 3503000 0 0 Deletion 76999 LOC_Os04g06600 retrotransposon protein, putative, unclassified, expressed FN4066-S Chr4 3426001 3503000 0 0 Deletion 76999 LOC_Os04g06610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4066-S Chr4 3426001 3503000 0 0 Deletion 76999 LOC_Os04g06620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4066-S Chr4 3426001 3503000 0 0 Deletion 76999 LOC_Os04g06630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4066-S Chr4 3426001 3503000 0 0 Deletion 76999 LOC_Os04g06640 retrotransposon protein, putative, unclassified FN4066-S Chr5 27816315 27816316 0 0 Deletion 1 HET FN4066-S Chr5 2965140 3138645 0 0 Inversion 0 LOC_Os05g05910 retrotransposon protein, putative, unclassified, expressed FN4066-S Chr5 2965145 3138653 0 0 Inversion 0 LOC_Os05g05910 retrotransposon protein, putative, unclassified, expressed FN4066-S Chr5 9941976 9941976 0 0 Insertion 1 HET FN4066-S Chr6 14917329 Chr1 18037392 0 Translocation 0 FN4066-S Chr6 6318724 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os06g11880 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4066-S Chr7 11743547 Chr5 19043121 0 Translocation 0 LOC_Os05g32560 transposon protein, putative, unclassified, expressed FN4066-S Chr7 16495532 T-G 0 0 Single Base Substitution 0 HET FN4066-S Chr7 20104745 C-T 0 0 Single Base Substitution 0 HET FN4066-S Chr8 15225735 15225743 0 0 Deletion 8 Homo FN4066-S Chr9 112233 112252 0 0 Deletion 19 frameshift_variant HET LOC_Os09g01100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4066-S Chr9 12213769 C-T 0 0 Single Base Substitution 0 HET FN4066-S Chr9 20120297 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g34090 sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating, putative, expressed