FN4099-S Chr1 12036761 C-T 0 0 Single Base Substitution 0 HET FN4099-S Chr1 12098997 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os01g21600 retrotransposon protein, putative, unclassified, expressed FN4099-S Chr1 20010086 20010087 0 0 Deletion 1 HET FN4099-S Chr1 42615517 42615524 0 0 Deletion 7 frameshift_variant Homo LOC_Os01g73550 mitochondrial-processing peptidase subunit alpha, mitochondrial precursor, putative, expressed FN4099-S Chr10 17072859 G-A 0 0 Single Base Substitution 0 Homo FN4099-S Chr10 5273308 5273309 0 0 Deletion 1 HET FN4099-S Chr11 23011420 T-C 0 0 Single Base Substitution 0 HET FN4099-S Chr11 6148001 6169000 0 0 Deletion 20999 LOC_Os11g11110 expressed protein FN4099-S Chr11 6148001 6169000 0 0 Deletion 20999 LOC_Os11g11120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4099-S Chr11 6148001 6169000 0 0 Deletion 20999 LOC_Os11g11130 expressed protein FN4099-S Chr11 6148001 6169000 0 0 Deletion 20999 LOC_Os11g11140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4099-S Chr11 6148001 6169000 0 0 Deletion 20999 LOC_Os11g11150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4099-S Chr11 6173001 6213000 0 0 Deletion 39999 LOC_Os11g11160 retrotransposon protein, putative, Ty3-gypsy subclass FN4099-S Chr11 6173001 6213000 0 0 Deletion 39999 LOC_Os11g11170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4099-S Chr11 6173001 6213000 0 0 Deletion 39999 LOC_Os11g11180 expressed protein FN4099-S Chr11 6173001 6213000 0 0 Deletion 39999 LOC_Os11g11200 expressed protein FN4099-S Chr11 6173001 6213000 0 0 Deletion 39999 LOC_Os11g11210 OsClp12 - Putative Clp protease homologue, expressed FN4099-S Chr11 6173001 6213000 0 0 Deletion 39999 LOC_Os11g11220 transposon protein, putative, unclassified, expressed FN4099-S Chr12 6957263 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g12620 retrotransposon protein, putative, unclassified, expressed FN4099-S Chr2 10832255 T-C 0 0 Single Base Substitution 0 HET FN4099-S Chr2 12344480 12344486 0 0 Deletion 6 disruptive_inframe_deletion HET LOC_Os02g20870 SNI1, putative, expressed FN4099-S Chr2 12355742 G-A 0 0 Single Base Substitution 0 HET FN4099-S Chr2 13341930 13341931 0 0 Deletion 1 HET FN4099-S Chr2 14310032 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g24670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4099-S Chr2 24217085 24217085 0 0 Insertion 74 HET FN4099-S Chr3 32204804 32399258 0 0 Inversion 0 LOC_Os03g56530 retrotransposon protein, putative, unclassified, expressed FN4099-S Chr3 32204812 32399256 0 0 Inversion 0 LOC_Os03g56530 retrotransposon protein, putative, unclassified, expressed FN4099-S Chr3 4989388 4989389 0 0 Deletion 1 HET FN4099-S Chr3 8273578 8273583 0 0 Deletion 5 frameshift_variant HET LOC_Os03g15140 retrotransposon protein, putative, unclassified, expressed FN4099-S Chr4 11451413 T-A 0 0 Single Base Substitution 0 HET FN4099-S Chr4 18899360 18899361 0 0 Deletion 1 HET FN4099-S Chr4 28375116 28375122 0 0 Deletion 6 Homo FN4099-S Chr4 29023719 29023730 0 0 Deletion 11 Homo FN4099-S Chr4 2925604 G-C 0 0 Single Base Substitution 0 HET FN4099-S Chr4 6936895 6936899 0 0 Deletion 4 HET FN4099-S Chr5 12140692 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os05g20710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4099-S Chr5 534267 534278 0 0 Deletion 11 Homo FN4099-S Chr6 12651207 G-T 0 0 Single Base Substitution 0 Homo FN4099-S Chr6 1758407 Chr1 11145869 0 Translocation 0 LOC_Os01g19650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4099-S Chr6 1758407 Chr1 11145869 0 Translocation 0 LOC_Os06g04190 rad1, putative, expressed FN4099-S Chr6 1758412 Chr1 11146207 0 Translocation 0 LOC_Os01g19650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4099-S Chr6 1758412 Chr1 11146207 0 Translocation 0 LOC_Os06g04190 rad1, putative, expressed FN4099-S Chr6 737898 G-A 0 0 Single Base Substitution 0 HET FN4099-S Chr6 8615563 T-G 0 0 Single Base Substitution 0 Homo FN4099-S Chr7 11099848 11099850 0 0 Deletion 2 HET FN4099-S Chr7 25933310 Chr1 33195484 0 Translocation 0 LOC_Os01g57440 DNA repair metallo-beta-lactamase, putative, expressed FN4099-S Chr7 25933310 Chr1 33195484 0 Translocation 0 LOC_Os07g43316 SAP domain-containing protein, putative, expressed FN4099-S Chr7 25934816 Chr1 33195483 0 Translocation 0 LOC_Os01g57440 DNA repair metallo-beta-lactamase, putative, expressed FN4099-S Chr7 25934816 Chr1 33195483 0 Translocation 0 LOC_Os07g43316 SAP domain-containing protein, putative, expressed FN4099-S Chr7 28459550 G-A 0 0 Single Base Substitution 0 HET FN4099-S Chr7 3137685 A-T 0 0 Single Base Substitution 0 Homo FN4099-S Chr7 3137687 G-T 0 0 Single Base Substitution 0 Homo FN4099-S Chr9 21504183 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g37240 glutathione S-transferase, C-terminal domain containing protein, expressed FN4099-S Chr9 6773224 Chr2 14238917 0 Translocation 0 LOC_Os02g24570 retrotransposon protein, putative, unclassified FN4099-S Chr9 73161 77485 0 0 Inversion 0 LOC_Os09g01040 retrotransposon protein, putative, unclassified, expressed FN4099-S Chr9 73161 77485 0 0 Inversion 0 LOC_Os09g01050 retrotransposon protein, putative, Ty3-gypsy subclass FN4099-S Chr9 73162 77510 0 0 Inversion 0 LOC_Os09g01040 retrotransposon protein, putative, unclassified, expressed FN4099-S Chr9 73162 77510 0 0 Inversion 0 LOC_Os09g01050 retrotransposon protein, putative, Ty3-gypsy subclass FN4099-S Chr9 9369984 A-C 0 0 Single Base Substitution 0 HET