FN4109-S Chr1 21653585 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g38550 transposon protein, putative, unclassified, expressed FN4109-S Chr1 21653586 G-A 0 0 Single Base Substitution 0 HET FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44069 glycerol-3-phosphate acyltransferase, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44090 X8 domain containing protein, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44100 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44110 serine/threonine-protein kinase, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44120 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44130 aspartic proteinase oryzasin-1 precursor, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44140 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44160 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44170 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44180 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44190 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44200 retrotransposon protein, putative, unclassified, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44210 50S ribosomal protein L31, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44220 glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44230 transcription factor X1, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44240 zinc finger, C3HC4 type domain containing protein, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44250 CBS domain containing membrane protein, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44260 dihydroflavonol-4-reductase, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44270 retrotransposon protein, putative, unclassified, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44290 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44310 dnaJ domain containing protein, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44320 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44330 laccase precursor protein, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44340 pectinesterase, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44350 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44360 CBS domain containing membrane protein, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44370 MYB family transcription factor, putative FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44380 hypothetical protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44390 MYB family transcription factor, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44394 mitotic checkpoint protein, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44430 retrotransposon protein, putative, unclassified, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44940 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44950 AMP-binding enzyme, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44960 hydrolase, alpha/beta fold family domain containing protein, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44970 polygalacturonase, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44980 peptide deformylase, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g44990 ercc6 protein, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45000 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45010 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45020 F-box protein interaction domain containing protein, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45040 Leucine rich repeat N-terminal domain containing protein, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45060 polygalacturonase, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45070 peptide deformylase, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45080 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45090 MYB family transcription factor, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45100 retrotransposon protein, putative, unclassified, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45110 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45120 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45130 hypothetical protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45140 anthocyanin 3-O-beta-glucosyltransferase, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45150 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45160 expressed protein FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45174 transposon protein, putative, unclassified, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45190 DEAD-box ATP-dependent RNA helicase, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45200 cinnamoyl-CoA reductase-related, putative, expressed FN4109-S Chr1 25247001 25659000 0 0 Deletion 411999 LOC_Os01g45210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4109-S Chr1 2611876 3398222 0 0 Inversion 0 LOC_Os01g05500 zinc finger protein, putative, expressed FN4109-S Chr1 2611876 3398222 0 0 Inversion 0 LOC_Os01g07200 staphylococcal nuclease homologue, putative, expressed FN4109-S Chr1 2611886 3398245 0 0 Inversion 0 LOC_Os01g05500 zinc finger protein, putative, expressed FN4109-S Chr1 2611886 3398245 0 0 Inversion 0 LOC_Os01g07200 staphylococcal nuclease homologue, putative, expressed FN4109-S Chr1 37059883 C-T 0 0 Single Base Substitution 0 Homo FN4109-S Chr1 40809549 40809551 0 0 Deletion 2 Homo FN4109-S Chr10 12736903 12736904 0 0 Deletion 1 frameshift_variant Homo LOC_Os10g24770 retrotransposon protein, putative, unclassified, expressed FN4109-S Chr10 22858501 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g42430 transcription factor MYC7E, putative, expressed FN4109-S Chr10 643766 C-T 0 0 Single Base Substitution 0 HET FN4109-S Chr10 6622151 6622160 0 0 Deletion 9 Homo FN4109-S Chr10 7932276 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g15130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4109-S Chr11 11558331 11558331 0 0 Insertion 2 HET FN4109-S Chr11 20823864 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g35520 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4109-S Chr11 22532956 Chr5 5767113 0 Translocation 0 LOC_Os05g10590 expressed protein FN4109-S Chr11 5025674 Chr8 3815240 0 Translocation 0 FN4109-S Chr11 8818695 G-T 0 0 Single Base Substitution 0 HET FN4109-S Chr12 1483334 C-T 0 0 Single Base Substitution 0 Homo FN4109-S Chr12 17220116 Chr8 4874715 0 Translocation 0 LOC_Os08g08460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4109-S Chr12 17220116 Chr8 4874715 0 Translocation 0 LOC_Os12g29070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4109-S Chr12 20267847 G-A 0 0 Single Base Substitution 0 HET FN4109-S Chr12 25803536 T-C 0 0 Single Base Substitution 0 HET FN4109-S Chr12 26723112 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g43020 retrotransposon protein, putative, unclassified, expressed FN4109-S Chr12 807001 851000 0 0 Deletion 43999 LOC_Os12g02430 MYB protein, putative, expressed FN4109-S Chr12 807001 851000 0 0 Deletion 43999 LOC_Os12g02440 WRKY95, expressed FN4109-S Chr12 807001 851000 0 0 Deletion 43999 LOC_Os12g02450 WRKY64, expressed FN4109-S Chr12 807001 851000 0 0 Deletion 43999 LOC_Os12g02460 transposon protein, putative, unclassified, expressed FN4109-S Chr12 807001 851000 0 0 Deletion 43999 LOC_Os12g02470 WRKY65, expressed FN4109-S Chr12 807001 851000 0 0 Deletion 43999 LOC_Os12g02490 expressed protein FN4109-S Chr12 8376265 Chr3 25764651 0 Translocation 0 LOC_Os12g14650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4109-S Chr12 9324964 G-A 0 0 Single Base Substitution 0 HET FN4109-S Chr2 20269545 G-A 0 0 Single Base Substitution 0 Homo FN4109-S Chr2 24514837 C-T 0 0 Single Base Substitution 0 Homo FN4109-S Chr2 27066271 A-T 0 0 Single Base Substitution 0 Homo FN4109-S Chr2 27066272 A-T 0 0 Single Base Substitution 0 Homo FN4109-S Chr2 29262121 29262129 0 0 Deletion 8 Homo FN4109-S Chr2 31409683 31762021 0 0 Inversion 0 LOC_Os02g51290 HVA22, putative, expressed FN4109-S Chr2 31409688 31763499 0 0 Inversion 0 LOC_Os02g51290 HVA22, putative, expressed FN4109-S Chr2 31409688 31763499 0 0 Inversion 0 LOC_Os02g51860 dehydration response related protein, putative, expressed FN4109-S Chr2 8078340 G-T 0 0 Single Base Substitution 0 HET FN4109-S Chr3 16448154 Chr1 25435244 0 Translocation 0 FN4109-S Chr3 17018920 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g29864 retrotransposon protein, putative, unclassified, expressed FN4109-S Chr3 20189375 T-A 0 0 Single Base Substitution 0 HET FN4109-S Chr3 30544925 C-T 0 0 Single Base Substitution 0 HET FN4109-S Chr4 1384921 Chr2 7913542 0 Translocation 0 LOC_Os02g14410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4109-S Chr4 1384921 Chr2 7913542 0 Translocation 0 LOC_Os04g03250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4109-S Chr4 17842819 Chr2 2046095 0 Translocation 0 FN4109-S Chr4 19898186 19898187 0 0 Deletion 1 Homo FN4109-S Chr4 6287229 C-A 0 0 Single Base Substitution 0 HET FN4109-S Chr5 1828366 A-G 0 0 Single Base Substitution 0 HET FN4109-S Chr6 14439925 T-A 0 0 Single Base Substitution 0 HET FN4109-S Chr6 17270453 Chr2 22539003 0 Translocation 0 FN4109-S Chr6 17332598 A-T 0 0 Single Base Substitution 0 HET FN4109-S Chr6 17332610 G-T 0 0 Single Base Substitution 0 HET FN4109-S Chr6 17847279 Chr3 25571192 0 Translocation 0 LOC_Os03g45290 ankyrin repeat domain-containing protein 50, putative, expressed FN4109-S Chr6 22433238 22433239 0 0 Deletion 1 HET FN4109-S Chr6 28240275 C-A 0 0 Single Base Substitution 0 HET FN4109-S Chr6 28308259 G-A 0 0 Single Base Substitution 0 HET FN4109-S Chr6 3027504 3027504 0 0 Insertion 4 HET FN4109-S Chr7 14847060 14847061 0 0 Deletion 1 HET FN4109-S Chr7 23434386 Chr4 22167875 0 Translocation 0 LOC_Os07g39110 AP2/EREBP transcription factor BABY BOOM, putative, expressed FN4109-S Chr7 4103219 C-A 0 0 Single Base Substitution 0 HET FN4109-S Chr7 4864081 4864086 0 0 Deletion 5 frameshift_variant Homo LOC_Os07g09280 expressed protein FN4109-S Chr7 4872957 A-T 0 0 Single Base Substitution 0 HET FN4109-S Chr8 16637829 Chr6 1224653 0 Translocation 0 FN4109-S Chr8 19718571 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g31800 RGH1A, putative, expressed FN4109-S Chr8 21320859 C-A 0 0 Single Base Substitution 0 HET FN4109-S Chr8 26322774 C-T 0 0 Single Base Substitution 0 HET FN4109-S Chr8 9241855 9241857 0 0 Deletion 2 HET FN4109-S Chr9 19220275 G-T 0 0 Single Base Substitution 0 HET FN4109-S Chr9 19932428 A-T 0 0 Single Base Substitution 0 HET FN4109-S Chr9 21263545 21263545 0 0 Insertion 4 HET