FN4148-S Chr1 1819920 1819922 0 0 Deletion 2 HET FN4148-S Chr1 29091694 C-A 0 0 Single Base Substitution 0 HET FN4148-S Chr10 11064672 A-G 0 0 Single Base Substitution 0 HET FN4148-S Chr10 12702991 12702991 0 0 Insertion 1 HET FN4148-S Chr10 17434724 C-T 0 0 Single Base Substitution 0 HET FN4148-S Chr10 17434745 C-T 0 0 Single Base Substitution 0 HET FN4148-S Chr10 17434750 C-A 0 0 Single Base Substitution 0 HET FN4148-S Chr10 5761183 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g10480 expressed protein FN4148-S Chr11 1995792 1995814 0 0 Deletion 22 frameshift_variant HET LOC_Os11g04680 zinc finger, C3HC4 type domain containing protein, expressed FN4148-S Chr11 20913259 20913261 0 0 Deletion 2 HET FN4148-S Chr11 254645 254660 0 0 Deletion 15 Homo FN4148-S Chr11 5084182 C-T 0 0 Single Base Substitution 0 Homo FN4148-S Chr12 13498001 13530000 0 0 Deletion 31999 LOC_Os12g23760 growth regulator related protein, putative, expressed FN4148-S Chr12 13498001 13530000 0 0 Deletion 31999 LOC_Os12g23770 retrotransposon protein, putative, LINE subclass, expressed FN4148-S Chr12 13498001 13530000 0 0 Deletion 31999 LOC_Os12g23780 expressed protein FN4148-S Chr12 13498001 13530000 0 0 Deletion 31999 LOC_Os12g23790 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4148-S Chr12 13498001 13530000 0 0 Deletion 31999 LOC_Os12g23800 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4148-S Chr12 4130306 Chr2 22709085 0 Translocation 0 LOC_Os02g37630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4148-S Chr12 4130306 Chr2 22709085 0 Translocation 0 LOC_Os12g08100 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4148-S Chr12 9388843 9527098 0 0 Inversion 0 LOC_Os12g16400 transposon protein, putative, CACTA, En/Spm sub-class FN4148-S Chr12 9388872 9527313 0 0 Inversion 0 LOC_Os12g16400 transposon protein, putative, CACTA, En/Spm sub-class FN4148-S Chr12 9527108 Chr3 16361385 0 Translocation 0 LOC_Os03g28400 transport protein particle component, Bet3, domain containing protein, expressed FN4148-S Chr12 9527309 Chr3 16361386 0 Translocation 0 LOC_Os03g28400 transport protein particle component, Bet3, domain containing protein, expressed FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17230 expressed protein FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17240 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17250 expressed protein FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17270 transposon protein, putative, CACTA, En/Spm sub-class FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17280 expressed protein FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17310 prefoldin, putative, expressed FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17320 polyprenyl synthetase, putative, expressed FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17330 conserved hypothetical protein FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17340 CC-NBS-LRR resistance protein MLA13, putative, expressed FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17350 retrotransposon protein, putative, unclassified, expressed FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17360 retrotransposon protein, putative, unclassified, expressed FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17370 expressed protein FN4148-S Chr12 9857001 9972000 0 0 Deletion 114999 LOC_Os12g17390 retrotransposon protein, putative, unclassified, expressed FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17400 retrotransposon protein, putative, unclassified FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17410 NB-ARC domain containing protein, expressed FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17420 resistance protein, putative, expressed FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17424 retrotransposon protein, putative, unclassified FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17430 NBS-LRR disease resistance protein, putative, expressed FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17440 retrotransposon protein, putative, unclassified FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17450 retrotransposon protein, putative, unclassified, expressed FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17460 retrotransposon protein, putative, unclassified, expressed FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17470 retrotransposon protein, putative, unclassified, expressed FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17480 MLA12, putative, expressed FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17490 stripe rust resistance protein Yr10, putative, expressed FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17500 expressed protein FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17520 conserved hypothetical protein FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17530 expressed protein FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17540 vignain precursor, putative, expressed FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17550 expressed protein FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17560 expressed protein FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17570 GDSL-like lipase/acylhydrolase, putative, expressed FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17580 retrotransposon protein, putative, unclassified FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17590 expressed protein FN4148-S Chr12 9974001 10084000 0 0 Deletion 109999 LOC_Os12g17600 ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed FN4148-S Chr2 26440037 26440038 0 0 Deletion 1 HET FN4148-S Chr2 7784134 7784137 0 0 Deletion 3 Homo FN4148-S Chr2 8640446 C-T 0 0 Single Base Substitution 0 Homo FN4148-S Chr3 12505549 G-C 0 0 Single Base Substitution 0 HET FN4148-S Chr3 13507824 13559007 0 0 Inversion 0 FN4148-S Chr3 15522583 15522585 0 0 Deletion 2 HET FN4148-S Chr3 17987502 C-A 0 0 Single Base Substitution 0 Homo FN4148-S Chr3 18513064 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING Homo LOC_Os03g32360 retrotransposon protein, putative, Ty3-gypsy subclass FN4148-S Chr3 2133859 2133865 0 0 Deletion 6 HET FN4148-S Chr3 27404607 A-G 0 0 Single Base Substitution 0 Homo FN4148-S Chr3 2893819 G-A 0 0 Single Base Substitution 0 HET FN4148-S Chr3 9847972 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g17700 CGMC_MAPKCGMC_2_ERK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed FN4148-S Chr4 21531729 T-A 0 0 Single Base Substitution 0 Homo FN4148-S Chr4 22621177 22621177 0 0 Insertion 218 HET FN4148-S Chr4 2597313 C-T 0 0 Single Base Substitution 0 HET FN4148-S Chr4 30851457 G-A 0 0 Single Base Substitution 0 Homo FN4148-S Chr4 34286733 G-C 0 0 Single Base Substitution 0 HET FN4148-S Chr4 4753071 5251883 0 0 Inversion 0 FN4148-S Chr4 4793416 C-A 0 0 Single Base Substitution 0 HET FN4148-S Chr4 5711000 A-G 0 0 Single Base Substitution 0 HET FN4148-S Chr4 8859425 A-C 0 0 Single Base Substitution 0 HET FN4148-S Chr4 8869001 8929000 0 0 Deletion 59999 LOC_Os04g16340 retrotransposon protein, putative, unclassified, expressed FN4148-S Chr4 8869001 8929000 0 0 Deletion 59999 LOC_Os04g16350 retrotransposon protein, putative, unclassified, expressed FN4148-S Chr4 8869001 8929000 0 0 Deletion 59999 LOC_Os04g16360 retrotransposon protein, putative, Ty3-gypsy subclass FN4148-S Chr4 8869001 8929000 0 0 Deletion 59999 LOC_Os04g16370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4148-S Chr4 8869001 8929000 0 0 Deletion 59999 LOC_Os04g16380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4148-S Chr4 8869001 8929000 0 0 Deletion 59999 LOC_Os04g16390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4148-S Chr4 8869001 8929000 0 0 Deletion 59999 LOC_Os04g16400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4148-S Chr4 8869001 8929000 0 0 Deletion 59999 LOC_Os04g16410 retrotransposon protein, putative, unclassified, expressed FN4148-S Chr4 8869001 8929000 0 0 Deletion 59999 LOC_Os04g16420 retrotransposon protein, putative, Ty1-copia subclass, expressed FN4148-S Chr4 8939001 8996000 0 0 Deletion 56999 LOC_Os04g16440 retrotransposon protein, putative, unclassified FN4148-S Chr4 8939001 8996000 0 0 Deletion 56999 LOC_Os04g16450 aquaporin protein, putative, expressed FN4148-S Chr4 8939001 8996000 0 0 Deletion 56999 LOC_Os04g16459 retrotransposon protein, putative, unclassified, expressed FN4148-S Chr4 8939001 8996000 0 0 Deletion 56999 LOC_Os04g16468 retrotransposon, putative, centromere-specific FN4148-S Chr4 8939001 8996000 0 0 Deletion 56999 LOC_Os04g16480 transposon protein, putative, unclassified FN4148-S Chr4 8939001 8996000 0 0 Deletion 56999 LOC_Os04g16490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4148-S Chr4 8939001 8996000 0 0 Deletion 56999 LOC_Os04g16500 retrotransposon protein, putative, Ty3-gypsy subclass FN4148-S Chr4 8939001 8996000 0 0 Deletion 56999 LOC_Os04g16510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4148-S Chr4 8939001 8996000 0 0 Deletion 56999 LOC_Os04g16520 retrotransposon protein, putative, unclassified FN4148-S Chr4 8939001 8996000 0 0 Deletion 56999 LOC_Os04g16530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4148-S Chr4 8939001 8996000 0 0 Deletion 56999 LOC_Os04g16540 retrotransposon protein, putative, Ty3-gypsy subclass FN4148-S Chr4 9007001 9024000 0 0 Deletion 16999 LOC_Os04g16570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4148-S Chr4 9007001 9024000 0 0 Deletion 16999 LOC_Os04g16580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4148-S Chr4 9007001 9024000 0 0 Deletion 16999 LOC_Os04g16590 retrotransposon protein, putative, Ty3-gypsy subclass FN4148-S Chr4 9037040 T-A 0 0 Single Base Substitution 0 HET FN4148-S Chr5 15388851 15388851 0 0 Insertion 2 HET FN4148-S Chr5 29944845 29944845 0 0 Insertion 1 HET FN4148-S Chr5 3849925 C-A 0 0 Single Base Substitution 0 HET FN4148-S Chr5 3849934 T-A 0 0 Single Base Substitution 0 HET FN4148-S Chr5 7876620 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g14100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4148-S Chr5 8668265 A-C 0 0 Single Base Substitution 0 HET FN4148-S Chr5 9149537 9149540 0 0 Deletion 3 HET FN4148-S Chr6 18097374 18097395 0 0 Deletion 21 disruptive_inframe_deletion Homo LOC_Os06g31150 retrotransposon protein, putative, unclassified, expressed FN4148-S Chr6 23516344 Chr5 5212207 0 Translocation 0 LOC_Os05g09330 transposon protein, putative, CACTA, En/Spm sub-class FN4148-S Chr6 26226859 C-T 0 0 Single Base Substitution 0 HET FN4148-S Chr6 8511547 8511547 0 0 Insertion 1 frameshift_variant HET LOC_Os06g15020 3-ketoacyl-CoA synthase, putative, expressed FN4148-S Chr7 10033835 A-G 0 0 Single Base Substitution 0 HET FN4148-S Chr7 11265612 A-G 0 0 Single Base Substitution 0 HET FN4148-S Chr7 24203288 A-T 0 0 Single Base Substitution 0 HET FN4148-S Chr7 3512181 Chr1 3439924 0 Translocation 0 FN4148-S Chr7 6004073 G-A 0 0 Single Base Substitution 0 HET FN4148-S Chr8 10974086 10974088 0 0 Deletion 2 HET FN4148-S Chr8 14880118 Chr3 23141744 0 Translocation 0 FN4148-S Chr8 17100498 C-A 0 0 Single Base Substitution 0 HET FN4148-S Chr8 17699940 T-C 0 0 Single Base Substitution 0 HET FN4148-S Chr8 19024992 T-C 0 0 Single Base Substitution 0 Homo FN4148-S Chr8 19101139 19101145 0 0 Deletion 6 HET FN4148-S Chr8 26196489 A-G 0 0 Single Base Substitution 0 HET FN4148-S Chr8 338443 338448 0 0 Deletion 5 HET FN4148-S Chr8 4912290 Chr2 9373741 0 Translocation 0 FN4148-S Chr8 6736833 G-A 0 0 Single Base Substitution 0 HET FN4148-S Chr8 7721593 G-T 0 0 Single Base Substitution 0 Homo FN4148-S Chr9 11606050 A-G 0 0 Single Base Substitution 0 HET FN4148-S Chr9 15244973 15244983 0 0 Deletion 10 HET FN4148-S Chr9 22344462 22344464 0 0 Deletion 2 Homo FN4148-S Chr9 6537609 C-T 0 0 Single Base Substitution 0 HET