FN4158-S Chr1 12787317 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os01g22750 retrotransposon protein, putative, unclassified, expressed FN4158-S Chr1 12993361 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g23090 retrotransposon protein, putative, Ty1-copia subclass, expressed FN4158-S Chr1 14967850 G-A 0 0 Single Base Substitution 0 HET FN4158-S Chr1 19167156 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g34750 retrotransposon protein, putative, Ty3-gypsy subclass FN4158-S Chr1 19167157 T-A 0 0 Single Base Substitution 0 HET FN4158-S Chr1 40308970 40308970 0 0 Insertion 1 frameshift_variant HET LOC_Os01g69810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4158-S Chr10 12546326 C-A 0 0 Single Base Substitution 0 HET FN4158-S Chr10 15766386 15766391 0 0 Deletion 5 HET FN4158-S Chr10 15824395 T-A 0 0 Single Base Substitution 0 HET FN4158-S Chr10 2580103 2580103 0 0 Insertion 1 HET FN4158-S Chr10 7209709 7209769 0 0 Deletion 60 disruptive_inframe_deletion HET LOC_Os10g13350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4158-S Chr11 19084537 T-C 0 0 Single Base Substitution 0 HET FN4158-S Chr11 20084001 20105000 0 0 Deletion 20999 LOC_Os11g34290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4158-S Chr11 20084001 20105000 0 0 Deletion 20999 LOC_Os11g34300 chromatin modification-related protein EAF3, putative, expressed FN4158-S Chr11 20084001 20105000 0 0 Deletion 20999 LOC_Os11g34305 transposon protein, putative, Mutator sub-class, expressed FN4158-S Chr11 20103463 20308039 0 0 Inversion 0 LOC_Os11g34305 transposon protein, putative, Mutator sub-class, expressed FN4158-S Chr11 20103463 20308039 0 0 Inversion 0 LOC_Os11g34660 LTPL98 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN4158-S Chr11 2136226 T-A 0 0 Single Base Substitution 0 HET FN4158-S Chr11 25055441 25056039 0 0 Deletion 598 HET FN4158-S Chr11 25677047 25677052 0 0 Deletion 5 frameshift_variant Homo LOC_Os11g42640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4158-S Chr11 3095103 G-T 0 0 Single Base Substitution 0 HET FN4158-S Chr12 1156364 G-A 0 0 Single Base Substitution 0 HET FN4158-S Chr12 24329851 G-C 0 0 Single Base Substitution 0 HET FN4158-S Chr12 25114842 25114842 0 0 Insertion 2 HET FN4158-S Chr12 9025228 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g15820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4158-S Chr2 31434521 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g51330 MAG2, putative, expressed FN4158-S Chr2 9208446 G-T 0 0 Single Base Substitution 0 Homo FN4158-S Chr3 1080286 1080288 0 0 Deletion 2 Homo FN4158-S Chr3 11315495 11315495 0 0 Insertion 1 frameshift_variant HET LOC_Os03g20080 retrotransposon protein, putative, unclassified, expressed FN4158-S Chr3 17202056 G-C 0 0 Single Base Substitution 0 Homo FN4158-S Chr3 31623063 31623090 0 0 Deletion 27 start_lost&inframe_deletion Homo LOC_Os03g55570 upstream activation factor subunit spp27, putative, expressed FN4158-S Chr3 6762215 6762217 0 0 Deletion 2 HET FN4158-S Chr3 6986336 C-T 0 0 Single Base Substitution 0 HET FN4158-S Chr4 12783042 C-T 0 0 Single Base Substitution 0 HET FN4158-S Chr4 13192603 13517064 0 0 Inversion 0 FN4158-S Chr4 13192608 13517064 0 0 Inversion 0 FN4158-S Chr4 14111089 14111090 0 0 Deletion 1 HET FN4158-S Chr4 19664023 A-G 0 0 Single Base Substitution 0 HET FN4158-S Chr4 24624991 24625003 0 0 Deletion 12 HET FN4158-S Chr4 26414689 26414691 0 0 Deletion 2 HET FN4158-S Chr4 30591531 G-T 0 0 Single Base Substitution 0 HET FN4158-S Chr4 7710075 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g13820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4158-S Chr4 8699631 8699631 0 0 Insertion 3 disruptive_inframe_insertion HET LOC_Os04g16030 transposon protein, putative, CACTA, En/Spm sub-class FN4158-S Chr5 15683386 15683386 0 0 Insertion 10 HET FN4158-S Chr5 16274586 16274590 0 0 Deletion 4 Homo FN4158-S Chr6 10018698 10018706 0 0 Deletion 8 Homo FN4158-S Chr6 8811236 8811236 0 0 Insertion 130 disruptive_inframe_insertion HET LOC_Os06g15540 retrotransposon protein, putative, unclassified, expressed FN4158-S Chr7 12175990 12175991 0 0 Deletion 1 HET FN4158-S Chr7 19951968 C-A 0 0 Single Base Substitution 0 HET FN4158-S Chr7 25562 G-A 0 0 Single Base Substitution 0 HET FN4158-S Chr7 26761922 26761937 0 0 Deletion 15 Homo FN4158-S Chr7 7603139 G-A 0 0 Single Base Substitution 0 HET FN4158-S Chr7 9656753 G-A 0 0 Single Base Substitution 0 HET FN4158-S Chr8 10787651 T-A 0 0 Single Base Substitution 0 HET FN4158-S Chr8 12237941 12237941 0 0 Insertion 12 disruptive_inframe_insertion HET LOC_Os08g20370 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4158-S Chr8 12472642 12472645 0 0 Deletion 3 inframe_deletion HET LOC_Os08g20770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4158-S Chr8 17910649 17910649 0 0 Insertion 148 HET FN4158-S Chr8 321645 321645 0 0 Insertion 4 HET FN4158-S Chr8 7532153 7532153 0 0 Insertion 1 HET FN4158-S Chr8 94764 C-T 0 0 Single Base Substitution 0 HET FN4158-S Chr9 6747954 Chr6 17781366 0 Translocation 0