FN4247-S Chr1 12225178 12225509 0 0 Inversion 0 LOC_Os01g21790 expressed protein FN4247-S Chr1 23883864 23884125 0 0 Inversion 0 LOC_Os01g42120 expressed protein FN4247-S Chr1 24041172 24041173 0 0 Deletion 1 Homo FN4247-S Chr10 1332713 1332713 0 0 Insertion 1 frameshift_variant HET LOC_Os10g03150 retrotransposon protein, putative, unclassified FN4247-S Chr10 19777592 T-C 0 0 Single Base Substitution 0 HET FN4247-S Chr10 21264263 C-T 0 0 Single Base Substitution 0 HET FN4247-S Chr10 2823002 G-A 0 0 Single Base Substitution 0 Homo FN4247-S Chr10 3239243 Chr3 2174168 0 Translocation 0 LOC_Os10g06300 retrotransposon protein, putative, unclassified FN4247-S Chr11 15641150 15641152 0 0 Deletion 2 HET FN4247-S Chr11 15969834 A-T 0 0 Single Base Substitution 0 HET FN4247-S Chr11 16468975 G-T 0 0 Single Base Substitution 0 HET FN4247-S Chr11 16504488 C-T 0 0 Single Base Substitution 0 Homo FN4247-S Chr11 22853733 23223008 0 0 Inversion 0 LOC_Os11g39000 helix-loop-helix DNA-binding domain containing protein, expressed FN4247-S Chr11 22853744 23223013 0 0 Inversion 0 LOC_Os11g39000 helix-loop-helix DNA-binding domain containing protein, expressed FN4247-S Chr11 23916640 C-T 0 0 Single Base Substitution 0 HET FN4247-S Chr11 23916642 A-T 0 0 Single Base Substitution 0 HET FN4247-S Chr11 27232549 27232559 0 0 Deletion 10 HET FN4247-S Chr11 27744511 T-C 0 0 Single Base Substitution 0 HET FN4247-S Chr12 14781949 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g25530 transposon protein, putative, CACTA, En/Spm sub-class FN4247-S Chr12 16186821 16186822 0 0 Deletion 1 HET FN4247-S Chr12 19123238 Chr9 5377706 0 Translocation 0 LOC_Os12g31780 nitrilase-associated protein, putative, expressed FN4247-S Chr12 19125984 Chr9 5377687 0 Translocation 0 LOC_Os09g09890 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4247-S Chr12 19126005 Chr7 2309611 0 Translocation 0 FN4247-S Chr12 19128133 Chr7 2309604 0 Translocation 0 LOC_Os12g31790 expressed protein FN4247-S Chr12 19447633 Chr1 23373052 0 Translocation 0 FN4247-S Chr12 20168001 20214000 0 0 Deletion 45999 LOC_Os12g33340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4247-S Chr12 20168001 20214000 0 0 Deletion 45999 LOC_Os12g33350 retrotransposon protein, putative, unclassified FN4247-S Chr12 20168001 20214000 0 0 Deletion 45999 LOC_Os12g33360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4247-S Chr12 20168001 20214000 0 0 Deletion 45999 LOC_Os12g33370 retrotransposon protein, putative, Ty3-gypsy subclass FN4247-S Chr12 20168001 20214000 0 0 Deletion 45999 LOC_Os12g33380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4247-S Chr12 20168001 20214000 0 0 Deletion 45999 LOC_Os12g33390 retrotransposon protein, putative, unclassified, expressed FN4247-S Chr12 20168001 20214000 0 0 Deletion 45999 LOC_Os12g33415 expressed protein FN4247-S Chr12 20168001 20214000 0 0 Deletion 45999 LOC_Os12g33420 transposon protein, putative, CACTA, En/Spm sub-class FN4247-S Chr12 20168001 20214000 0 0 Deletion 45999 LOC_Os12g33434 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4247-S Chr12 20168001 20214000 0 0 Deletion 45999 LOC_Os12g33450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4247-S Chr12 20216442 20216443 0 0 Deletion 1 frameshift_variant HET LOC_Os12g33450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4247-S Chr12 20219001 20248000 0 0 Deletion 28999 LOC_Os12g33460 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4247-S Chr12 20219001 20248000 0 0 Deletion 28999 LOC_Os12g33470 expressed protein FN4247-S Chr12 20219001 20248000 0 0 Deletion 28999 LOC_Os12g33480 retrotransposon, putative, centromere-specific, expressed FN4247-S Chr12 20219001 20248000 0 0 Deletion 28999 LOC_Os12g33490 retrotransposon, putative, centromere-specific, expressed FN4247-S Chr12 20219001 20248000 0 0 Deletion 28999 LOC_Os12g33500 retrotransposon, putative, centromere-specific, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33540 retrotransposon protein, putative, unclassified, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33550 retrotransposon protein, putative, unclassified, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33560 retrotransposon protein, putative, unclassified, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33570 retrotransposon protein, putative, unclassified FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33590 hypothetical protein FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33600 expressed protein FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33610 phenylalanine ammonia-lyase, putative, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33620 transposon protein, putative, CACTA, En/Spm sub-class FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33630 retrotransposon, putative, centromere-specific, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33640 retrotransposon, putative, centromere-specific, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33650 retrotransposon protein, putative, unclassified, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33660 retrotransposon protein, putative, unclassified, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33670 retrotransposon protein, putative, unclassified FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33730 expressed protein FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33740 retrotransposon protein, putative, unclassified FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33750 retrotransposon protein, putative, unclassified FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33760 retrotransposon protein, putative, unclassified FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33770 expressed protein FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33780 expressed protein FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33790 ligA, putative, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33800 retrotransposon protein, putative, unclassified FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33820 retrotransposon protein, putative, unclassified FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33830 OsFBX449 - F-box domain containing protein, expressed FN4247-S Chr12 20258001 20416000 0 0 Deletion 157999 LOC_Os12g33840 hypothetical protein FN4247-S Chr12 20767377 20767923 0 0 Inversion 0 FN4247-S Chr12 20767392 20768109 0 0 Inversion 0 FN4247-S Chr12 21473627 T-C 0 0 Single Base Substitution 0 HET FN4247-S Chr12 22298849 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g36440 expressed protein FN4247-S Chr12 27207326 C-A 0 0 Single Base Substitution 0 HET FN4247-S Chr12 7898297 G-T 0 0 Single Base Substitution 0 HET FN4247-S Chr12 9725645 A-T 0 0 Single Base Substitution 0 HET FN4247-S Chr12 9725647 G-C 0 0 Single Base Substitution 0 HET FN4247-S Chr2 11687144 A-G 0 0 Single Base Substitution 0 HET FN4247-S Chr2 20697209 20697211 0 0 Deletion 2 HET FN4247-S Chr2 2412977 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g05070 expressed protein FN4247-S Chr2 24806907 T-C 0 0 Single Base Substitution 0 HET FN4247-S Chr2 2711735 2711736 0 0 Deletion 1 HET FN4247-S Chr3 11053574 C-T 0 0 Single Base Substitution 0 HET FN4247-S Chr3 11092688 11092700 0 0 Deletion 12 HET FN4247-S Chr3 17087787 A-T 0 0 Single Base Substitution 0 HET FN4247-S Chr3 34007676 34007681 0 0 Deletion 5 Homo FN4247-S Chr3 34279729 A-T 0 0 Single Base Substitution 0 Homo FN4247-S Chr3 7297144 T-A 0 0 Single Base Substitution 0 HET FN4247-S Chr4 19950274 G-T 0 0 Single Base Substitution 0 Homo FN4247-S Chr4 21347049 C-T 0 0 Single Base Substitution 0 HET FN4247-S Chr4 2201666 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g04600 retrotransposon protein, putative, Ty3-gypsy subclass FN4247-S Chr4 34563303 T-A 0 0 Single Base Substitution 0 HET FN4247-S Chr5 17626001 17682000 0 0 Deletion 55999 LOC_Os05g30410 PHF5-like protein domain containing protein, expressed FN4247-S Chr5 17626001 17682000 0 0 Deletion 55999 LOC_Os05g30420 expressed protein FN4247-S Chr5 17626001 17682000 0 0 Deletion 55999 LOC_Os05g30430 expressed protein FN4247-S Chr5 17626001 17682000 0 0 Deletion 55999 LOC_Os05g30440 expressed protein FN4247-S Chr5 17626001 17682000 0 0 Deletion 55999 LOC_Os05g30454 thiamin pyrophosphokinase 1, putative, expressed FN4247-S Chr5 17626001 17682000 0 0 Deletion 55999 LOC_Os05g30470 collagen alpha-1, putative, expressed FN4247-S Chr5 17626001 17682000 0 0 Deletion 55999 LOC_Os05g30480 DnaK family protein, putative, expressed FN4247-S Chr5 17626001 17682000 0 0 Deletion 55999 LOC_Os05g30490 harpin-induced protein 1 domain containing protein, expressed FN4247-S Chr5 17626001 17682000 0 0 Deletion 55999 LOC_Os05g30500 expressed protein FN4247-S Chr5 17626001 17682000 0 0 Deletion 55999 LOC_Os05g30510 expressed protein FN4247-S Chr5 17772781 A-G 0 0 Single Base Substitution 0 HET FN4247-S Chr5 19161752 G-A 0 0 Single Base Substitution 0 HET FN4247-S Chr5 19204527 19580417 0 0 Inversion 0 LOC_Os05g32780 hypothetical protein FN4247-S Chr5 19204533 Chr2 8794011 0 Translocation 0 LOC_Os05g32780 hypothetical protein FN4247-S Chr5 19219767 Chr2 8794007 0 Translocation 0 FN4247-S Chr5 19219778 19580556 0 0 Inversion 0 FN4247-S Chr5 19578593 A-T 0 0 Single Base Substitution 0 HET FN4247-S Chr5 24455362 A-T 0 0 Single Base Substitution 0 HET FN4247-S Chr6 12075837 12236314 0 0 Inversion 0 LOC_Os06g21170 retrotransposon protein, putative, Ty1-copia subclass, expressed FN4247-S Chr6 12128227 12236315 0 0 Inversion 0 LOC_Os06g21170 retrotransposon protein, putative, Ty1-copia subclass, expressed FN4247-S Chr6 13146230 Chr3 2131246 0 Translocation 0 FN4247-S Chr6 13904097 13904097 0 0 Insertion 53 HET FN4247-S Chr6 14580905 T-C 0 0 Single Base Substitution 0 HET FN4247-S Chr6 19969614 Chr1 25555964 0 Translocation 0 LOC_Os01g45030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4247-S Chr6 20099074 20099080 0 0 Deletion 6 Homo FN4247-S Chr6 30590260 30590260 0 0 Insertion 2 HET FN4247-S Chr6 391182 391187 0 0 Deletion 5 frameshift_variant HET LOC_Os06g01650 expressed protein FN4247-S Chr7 10696302 G-A 0 0 Single Base Substitution 0 HET FN4247-S Chr7 11798568 11798569 0 0 Deletion 1 frameshift_variant HET LOC_Os07g20430 transposon protein, putative, unclassified, expressed FN4247-S Chr7 15404764 G-A 0 0 Single Base Substitution 0 HET FN4247-S Chr7 1596492 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g03820 lectin-like receptor kinase, putative, expressed FN4247-S Chr7 17740262 17740266 0 0 Deletion 4 HET FN4247-S Chr7 2023256 2023257 0 0 Deletion 1 frameshift_variant HET LOC_Os07g04560 no apical meristem protein, putative, expressed FN4247-S Chr7 20438005 20438005 0 0 Insertion 2 HET FN4247-S Chr7 21148057 T-C 0 0 Single Base Substitution 0 HET FN4247-S Chr7 22969271 A-G 0 0 Single Base Substitution 0 HET FN4247-S Chr7 22973473 A-G 0 0 Single Base Substitution 0 HET FN4247-S Chr7 23976674 C-T 0 0 Single Base Substitution 0 HET FN4247-S Chr8 10620777 C-A 0 0 Single Base Substitution 0 HET FN4247-S Chr8 11821330 11821335 0 0 Deletion 5 HET FN4247-S Chr8 13836528 13836538 0 0 Deletion 10 HET FN4247-S Chr8 14016867 14016869 0 0 Deletion 2 frameshift_variant HET LOC_Os08g23210 retrotransposon protein, putative, unclassified, expressed FN4247-S Chr8 22193322 22193327 0 0 Deletion 5 HET FN4247-S Chr8 27378839 Chr2 14991309 0 Translocation 0 LOC_Os08g43320 OsRhmbd14 - Putative Rhomboid homologue, expressed FN4247-S Chr9 17898500 17898507 0 0 Deletion 7 Homo FN4247-S Chr9 18843653 18843656 0 0 Deletion 3 Homo FN4247-S Chr9 3728004 G-A 0 0 Single Base Substitution 0 HET FN4247-S Chr9 9827112 T-C 0 0 Single Base Substitution 0 Homo