FN425-S Chr1 12717709 12717709 0 0 Insertion 1 FN425-S Chr1 14878619 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN425-S Chr1 15061869 15061899 0 0 Deletion 30 FN425-S Chr1 4700157 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN425-S Chr1 5744517 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN425-S Chr1 5864740 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN425-S Chr1 7351845 G-C 0 0 Single Base Substitution 0 STOP_LOST HET LOC_Os01g13190 histidinol dehydrogenase, chloroplast precursor, putative, expressed FN425-S Chr1 8521412 C-T 0 0 Single Base Substitution 0 INTRON HET FN425-S Chr10 21363718 21363736 0 0 Deletion 18 FN425-S Chr10 22642628 22643827 0 0 Deletion 1199 LOC_Os10g42100 pyruvate kinase, putative, expressed FN425-S Chr10 23057660 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN425-S Chr10 8295574 8295584 0 0 Deletion 10 LOC_Os10g16640 expressed protein FN425-S Chr11 18493101 18493101 0 0 Insertion 1 FN425-S Chr11 20783228 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN425-S Chr12 10083852 10083852 0 0 Insertion 1 FN425-S Chr12 11822134 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN425-S Chr12 12594529 12594530 0 0 Deletion 1 FN425-S Chr12 13040224 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN425-S Chr12 1898822 1898823 0 0 Deletion 1 FN425-S Chr12 20359181 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN425-S Chr12 4746036 Chr9 13583006 0 Translocation 0 FN425-S Chr12 9194365 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN425-S Chr2 10917171 10917172 0 0 Deletion 1 FN425-S Chr2 21111038 21111047 0 0 Deletion 9 LOC_Os02g35150 splicing factor U2AF, putative, expressed FN425-S Chr2 21816393 21816393 0 0 Insertion 2 FN425-S Chr2 23796244 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN425-S Chr2 33736157 33736162 0 0 Deletion 5 FN425-S Chr2 3598467 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN425-S Chr3 15264946 C-G 0 0 Single Base Substitution 0 INTRON HET FN425-S Chr3 20618829 20618835 0 0 Deletion 6 FN425-S Chr3 21454976 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN425-S Chr3 23135988 23135998 0 0 Deletion 10 FN425-S Chr3 27593594 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN425-S Chr3 33110778 33390418 0 0 Inversion 279640 LOC_Os03g58170 stem-specific protein TSJT1, putative, expressed FN425-S Chr3 33110778 33390418 0 0 Inversion 279640 LOC_Os03g58620 small multi-drug export protein, putative, expressed FN425-S Chr3 33110887 Chr1 37157220 0 Translocation 0 LOC_Os01g63990 hydrolase, alpha/beta fold family protein, putative, expressed FN425-S Chr3 33110887 Chr1 37157220 0 Translocation 0 LOC_Os03g58170 stem-specific protein TSJT1, putative, expressed FN425-S Chr3 33139421 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN425-S Chr3 33139422 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN425-S Chr3 33139426 C-G 0 0 Single Base Substitution 0 INTRON HOMO FN425-S Chr3 33390435 Chr1 37157264 0 Translocation 0 LOC_Os01g63990 hydrolase, alpha/beta fold family protein, putative, expressed FN425-S Chr3 33390435 Chr1 37157264 0 Translocation 0 LOC_Os03g58620 small multi-drug export protein, putative, expressed FN425-S Chr3 9793812 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN425-S Chr3 9793813 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN425-S Chr4 24026286 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN425-S Chr4 33008733 33008746 0 0 Deletion 13 FN425-S Chr4 5670352 6652992 0 0 Inversion 982640 LOC_Os04g10434 amidase family protein, putative, expressed FN425-S Chr4 9671104 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN425-S Chr5 17546296 18720089 0 0 Inversion 1173793 FN425-S Chr5 20860796 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN425-S Chr6 10016764 Chr2 19406593 0 Translocation 0 LOC_Os02g32690 pleiotropic drug resistance protein 15, putative, expressed FN425-S Chr6 10016764 Chr2 19406593 0 Translocation 0 LOC_Os06g17290 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed FN425-S Chr6 10016983 Chr2 19406590 0 Translocation 0 LOC_Os02g32690 pleiotropic drug resistance protein 15, putative, expressed FN425-S Chr6 10016983 Chr2 19406590 0 Translocation 0 LOC_Os06g17290 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed FN425-S Chr6 10134694 10182800 0 0 Inversion 48106 FN425-S Chr6 14412109 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN425-S Chr6 1614168 1614169 0 0 Deletion 1 LOC_Os06g03980 expressed protein FN425-S Chr6 1616217 G-C 0 0 Single Base Substitution 0 INTRON HET FN425-S Chr6 23143062 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN425-S Chr6 8448494 8448494 0 0 Insertion 2 FN425-S Chr7 7265466 7265468 0 0 Deletion 2 FN425-S Chr8 12762146 12762147 0 0 Deletion 1 LOC_Os08g21390 retrotransposon, putative, centromere-specific FN425-S Chr8 17314224 Chr6 30449509 0 Translocation 0 LOC_Os06g50300 heat shock protein, putative, expressed FN425-S Chr8 17314224 Chr6 30449509 0 Translocation 0 LOC_Os08g28390 retrotransposon protein, putative, unclassified, expressed FN425-S Chr8 18828066 18828080 0 0 Deletion 14 FN425-S Chr8 7985064 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN425-S Chr8 8359394 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g13950 transposon protein, putative, CACTA, En/Spm sub-class FN425-S Chr8 8941088 8941101 0 0 Deletion 13 FN425-S Chr8 9079818 Chr5 1328486 0 Translocation 0 FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01130 retrotransposon protein, putative, unclassified, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01134 expressed protein FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01140 expressed protein FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01150 retrotransposon protein, putative, Ty3-gypsy subclass FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01160 expressed protein FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01180 retrotransposon protein, putative, unclassified, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01190 retrotransposon protein, putative, unclassified, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01200 retrotransposon protein, putative, unclassified FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01210 retrotransposon protein, putative, unclassified, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01220 retrotransposon protein, putative, Ty3-gypsy subclass FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01240 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01280 retrotransposon protein, putative, Ty3-gypsy subclass FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01290 hhH-GPD superfamily base excision DNA repair protein, putative, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01300 transposon protein, putative, unclassified, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01310 expressed protein FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01320 expressed protein FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01330 expressed protein FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01350 retrotransposon protein, putative, unclassified, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01360 expressed protein FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01370 transposon protein, putative, unclassified, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01375 retrotransposon protein, putative, unclassified, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01380 conserved hypothetical protein FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01390 retrotransposon protein, putative, unclassified FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01400 retrotransposon protein, putative, unclassified FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01410 retrotransposon protein, putative, unclassified, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01420 expressed protein FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01430 retrotransposon protein, putative, unclassified, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01440 hypothetical protein FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01460 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01470 expressed protein FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01480 retrotransposon protein, putative, unclassified, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01490 retrotransposon protein, putative, unclassified FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01500 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01510 retrotransposon protein, putative, unclassified FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01520 transposon protein, putative, unclassified FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01530 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01550 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01570 retrotransposon protein, putative, Ty1-copia subclass FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01580 expressed protein FN425-S Chr9 132001 416000 0 0 Deletion 284000 LOC_Os09g01590 triacylglycerol lipase 1 precursor, putative, expressed FN425-S Chr9 14806864 14806866 0 0 Deletion 2 FN425-S Chr9 14886312 14912960 0 0 Deletion 26648 LOC_Os09g24924 transporter family protein, putative, expressed FN425-S Chr9 14886312 14912960 0 0 Deletion 26648 LOC_Os09g24940 expressed protein FN425-S Chr9 14886312 14912960 0 0 Deletion 26648 LOC_Os09g24954 double-stranded RNA binding motif containing protein, expressed FN425-S Chr9 14886314 Chr2 28144336 0 Translocation 0 LOC_Os02g46190 DUF581 domain containing protein, expressed FN425-S Chr9 14912954 Chr2 28144331 0 Translocation 0 LOC_Os02g46190 DUF581 domain containing protein, expressed FN425-S Chr9 18578924 T-G 0 0 Single Base Substitution 0 INTRON HET FN425-S Chr9 2746186 2746189 0 0 Deletion 3