FN4353-S Chr1 13770708 13770763 0 0 Deletion 55 HOMO FN4353-S Chr1 16323546 16323547 0 0 Deletion 1 HOMO FN4353-S Chr1 17197523 G-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN4353-S Chr1 1755248 1755268 0 0 Deletion 20 HOMO FN4353-S Chr1 26358733 26358733 0 0 Insertion 39 HET FN4353-S Chr1 29476577 29476580 0 0 Deletion 3 HOMO FN4353-S Chr1 35190692 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr1 35555868 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr1 36991263 36991263 0 0 Insertion 1 HET FN4353-S Chr1 38342486 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr1 39886717 T-C 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN4353-S Chr1 40211374 40211375 0 0 Deletion 1 HOMO LOC_Os01g69190 regulatory protein, putative, expressed FN4353-S Chr1 4146450 4146454 0 0 Deletion 4 HOMO FN4353-S Chr1 42028501 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr1 6428083 6428098 0 0 Deletion 15 HOMO FN4353-S Chr10 10740889 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr10 12797538 12797600 0 0 Deletion 62 HOMO FN4353-S Chr10 13384828 13384829 0 0 Deletion 1 HOMO FN4353-S Chr10 17526473 17526474 0 0 Deletion 1 HOMO FN4353-S Chr10 2904551 2904685 0 0 Inversion 135 HET FN4353-S Chr10 3284272 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g06390 retrotransposon protein, putative, Ty3-gypsy subclass FN4353-S Chr10 659077 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr11 11336425 11336436 0 0 Deletion 11 HOMO FN4353-S Chr11 19082831 19082831 0 0 Insertion 6 HET FN4353-S Chr11 21457696 21457701 0 0 Deletion 5 HOMO FN4353-S Chr11 21462437 21462449 0 0 Deletion 12 HOMO FN4353-S Chr11 23677171 23677172 0 0 Deletion 1 HOMO LOC_Os11g39730 NB-ARC domain containing protein, expressed FN4353-S Chr11 25120249 25120249 0 0 Insertion 1 HOMO FN4353-S Chr11 5098744 5098817 0 0 Deletion 73 HOMO FN4353-S Chr11 7896117 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr11 8776407 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr12 10241841 10241842 0 0 Deletion 1 HOMO FN4353-S Chr12 12280278 12280287 0 0 Deletion 9 HOMO FN4353-S Chr12 17927239 Chr1 16605896 0 Translocation 0 HET FN4353-S Chr12 18402478 18402479 0 0 Deletion 1 HOMO FN4353-S Chr12 19026685 19026685 0 0 Insertion 35 HET FN4353-S Chr12 20434190 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr12 23592551 G-A 0 0 Single Base Substitution 0 INTRON HET FN4353-S Chr12 24016480 24016482 0 0 Deletion 2 HOMO FN4353-S Chr12 5039362 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g09580 leafbladeless1, putative, expressed FN4353-S Chr12 5351003 5351005 0 0 Deletion 2 HOMO FN4353-S Chr2 15125323 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g25810 retrotransposon protein, putative, unclassified, expressed FN4353-S Chr2 19419067 19419144 0 0 Deletion 77 HOMO FN4353-S Chr2 20334704 20862010 0 0 Inversion 527307 HOMO FN4353-S Chr2 20334708 20862029 0 0 Inversion 527322 HOMO FN4353-S Chr2 20526845 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g34300 transposon protein, putative, unclassified, expressed FN4353-S Chr2 28691744 T-C 0 0 Single Base Substitution 0 INTRON HET FN4353-S Chr2 31912908 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4353-S Chr2 31912909 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4353-S Chr3 10113212 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr3 10795276 10795277 0 0 Deletion 1 HOMO FN4353-S Chr3 13239227 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g22900 SNF2 family N-terminal domain containing protein, expressed FN4353-S Chr3 14315783 14315783 0 0 Insertion 1 HET FN4353-S Chr3 1686916 1687082 0 0 Inversion 167 HET FN4353-S Chr3 1708817 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr3 22001597 G-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN4353-S Chr3 26734498 C-A 0 0 Single Base Substitution 0 INTRON HET FN4353-S Chr3 28653226 28653481 0 0 Inversion 256 HET FN4353-S Chr3 29362221 G-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN4353-S Chr3 3702827 3702828 0 0 Deletion 1 HOMO LOC_Os03g07250 cytochrome P450, putative, expressed FN4353-S Chr4 12142165 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4353-S Chr4 12919458 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr4 19254836 19254836 0 0 Insertion 1 HET FN4353-S Chr4 21173096 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr4 2361885 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4353-S Chr4 23773601 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4353-S Chr4 25685472 C-T 0 0 Single Base Substitution 0 INTRON HET FN4353-S Chr4 25970961 25970971 0 0 Deletion 10 HOMO FN4353-S Chr4 26070235 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g43980 retrotransposon protein, putative, unclassified, expressed FN4353-S Chr4 26501103 26501103 0 0 Insertion 2 HET FN4353-S Chr4 30611881 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr4 33515887 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr4 3363888 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr4 33838209 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr4 5702070 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr4 7279312 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN4353-S Chr4 8032388 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4353-S Chr5 10658557 10658560 0 0 Deletion 3 HOMO FN4353-S Chr5 15369435 15369435 0 0 Insertion 1 HOMO FN4353-S Chr5 15415732 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN4353-S Chr5 15655138 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4353-S Chr5 18371837 18371838 0 0 Deletion 1 HOMO FN4353-S Chr5 29342508 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN4353-S Chr5 2963867 2963885 0 0 Deletion 18 HOMO FN4353-S Chr5 3833839 3833840 0 0 Deletion 1 HOMO FN4353-S Chr5 9750747 9750748 0 0 Deletion 1 HOMO FN4353-S Chr6 14741277 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g25200 retrotransposon protein, putative, unclassified, expressed FN4353-S Chr6 15626606 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr6 16369018 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr6 17372725 17372725 0 0 Insertion 2 HET FN4353-S Chr6 24203346 Chr4 18789587 0 Translocation 0 HET FN4353-S Chr6 24203577 Chr4 18789577 0 Translocation 0 HET LOC_Os06g40590 expressed protein FN4353-S Chr6 5274614 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr6 8938825 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g15750 NB-ARC domain containing protein, expressed FN4353-S Chr7 10563398 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr7 11623766 11623777 0 0 Deletion 11 HOMO FN4353-S Chr7 15156479 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4353-S Chr7 18620776 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr7 21153001 21174000 0 0 Deletion 21000 HOMO LOC_Os07g35360 expressed protein FN4353-S Chr7 21153001 21174000 0 0 Deletion 21000 HOMO LOC_Os07g35370 TKL_IRAK_DUF26-lc.15 - DUF26 kinases have homology to DUF26 containing loci, expressed FN4353-S Chr7 21153001 21174000 0 0 Deletion 21000 HOMO LOC_Os07g35380 TKL_IRAK_DUF26-lc.16 - DUF26 kinases have homology to DUF26 containing loci, expressed FN4353-S Chr7 21153001 21174000 0 0 Deletion 21000 HOMO LOC_Os07g35390 TKL_IRAK_DUF26-lc.17 - DUF26 kinases have homology to DUF26 containing loci, expressed FN4353-S Chr7 21153001 21174000 0 0 Deletion 21000 HOMO LOC_Os07g35400 expressed protein FN4353-S Chr7 21940266 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g36660 retrotransposon protein, putative, unclassified, expressed FN4353-S Chr7 7825997 A-G 0 0 Single Base Substitution 0 INTRON HET FN4353-S Chr7 8145874 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN4353-S Chr7 9097579 9097586 0 0 Deletion 7 HOMO FN4353-S Chr8 13486000 13486000 0 0 Insertion 2 HET FN4353-S Chr8 16027131 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g26290 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4353-S Chr8 16638133 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr8 17718592 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr8 17719299 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr8 17980502 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr8 20550625 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr8 25162438 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr8 25732827 A-T 0 0 Single Base Substitution 0 INTRON HET FN4353-S Chr8 27752008 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr8 27865223 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g44260 inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed FN4353-S Chr8 5219977 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr9 1952426 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr9 20101828 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr9 2084369 2084369 0 0 Insertion 2 HET FN4353-S Chr9 21117381 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr9 21618822 21618824 0 0 Deletion 2 HOMO FN4353-S Chr9 22420447 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4353-S Chr9 4105020 T-C 0 0 Single Base Substitution 0 INTRON HET FN4353-S Chr9 4826850 G-A 0 0 Single Base Substitution 0 INTRON HET FN4353-S Chr9 4827813 T-C 0 0 Single Base Substitution 0 INTRON HET FN4353-S Chr9 7335141 7335239 0 0 Deletion 98 HOMO FN4353-S Chr9 7946021 7946031 0 0 Deletion 10 HOMO