FN4398-S Chr1 15733230 15733234 0 0 Deletion 4 HOMO FN4398-S Chr1 18327972 18327973 0 0 Deletion 1 HOMO FN4398-S Chr1 38593510 38593522 0 0 Deletion 12 HOMO FN4398-S Chr1 39918015 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4398-S Chr1 40579426 40579502 0 0 Deletion 76 HOMO FN4398-S Chr1 5005229 5005232 0 0 Deletion 3 HOMO FN4398-S Chr1 5466797 5466800 0 0 Deletion 3 HOMO LOC_Os01g10380 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4398-S Chr10 10606844 10606864 0 0 Deletion 20 HOMO FN4398-S Chr10 1276514 1276514 0 0 Insertion 1 HET FN4398-S Chr10 19634902 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4398-S Chr10 23085457 23085459 0 0 Deletion 2 HOMO FN4398-S Chr10 2405286 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4398-S Chr11 14356079 Chr9 19062296 0 Translocation 0 HOMO LOC_Os11g25190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4398-S Chr11 14554001 14583000 0 0 Deletion 29000 HOMO LOC_Os11g25540 expressed protein FN4398-S Chr11 14554001 14583000 0 0 Deletion 29000 HOMO LOC_Os11g25550 hypothetical protein FN4398-S Chr11 14554001 14583000 0 0 Deletion 29000 HOMO LOC_Os11g25560 BHLH transcription factor, putative, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25570 hypothetical protein FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25600 expressed protein FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25610 ZOS11-02 - C2H2 zinc finger protein, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25620 glycine-rich RNA-binding protein 8, putative, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25640 retrotransposon protein, putative, unclassified, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25650 retrotransposon protein, putative, unclassified FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25660 retrotransposon protein, putative, Ty3-gypsy subclass FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25680 retrotransposon protein, putative, unclassified FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25690 retrotransposon protein, putative, unclassified, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25700 tropinone reductase, putative, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25720 cytokinin-N-glucosyltransferase 1, putative, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25740 expressed protein FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25750 expressed protein FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25760 expressed protein FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25770 expressed protein FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25780 PB1 domain containing protein, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25810 retrotransposon protein, putative, Ty1-copia subclass FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25820 retrotransposon protein, putative, unclassified FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25830 retrotransposon protein, putative, unclassified, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25840 expressed protein FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25850 retrotransposon protein, putative, unclassified, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25860 protein Kinase, putative, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25870 hypothetical protein FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25874 hypothetical protein FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25880 expressed protein FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25890 hypothetical protein FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25900 hAT dimerisation domain containing protein, putative FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25910 expressed protein FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25920 transcription factor-related, putative, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25930 retrotransposon protein, putative, unclassified FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25940 retrotransposon protein, putative, unclassified FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25950 retrotransposon protein, putative, unclassified, expressed FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25970 hypothetical protein FN4398-S Chr11 14584001 14836000 0 0 Deletion 252000 HOMO LOC_Os11g25980 phospholipid-transporting ATPase 2, putative, expressed FN4398-S Chr11 17887434 17887434 0 0 Insertion 8 HET FN4398-S Chr11 20047812 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN4398-S Chr11 25544420 25544421 0 0 Deletion 1 HOMO LOC_Os11g42440 expressed protein FN4398-S Chr11 27010692 27010692 0 0 Insertion 1 HET FN4398-S Chr11 8110196 8110196 0 0 Insertion 1 HET FN4398-S Chr11 9012917 9025117 0 0 Inversion 12201 HET FN4398-S Chr11 9012922 9025119 0 0 Inversion 12198 HET FN4398-S Chr12 17679392 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g29640 transposon protein, putative, CACTA, En/Spm sub-class FN4398-S Chr12 20953053 20953053 0 0 Insertion 58 HET FN4398-S Chr12 9125973 9125987 0 0 Deletion 14 HOMO FN4398-S Chr2 12166794 12166811 0 0 Deletion 17 HOMO FN4398-S Chr2 22124080 22124082 0 0 Deletion 2 HOMO LOC_Os02g36640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4398-S Chr2 25918777 25918777 0 0 Insertion 1 HET FN4398-S Chr2 33987019 33987039 0 0 Deletion 20 HOMO FN4398-S Chr2 34707384 34707401 0 0 Deletion 17 HOMO FN4398-S Chr2 35894167 A-G 0 0 Single Base Substitution 0 INTRON HET FN4398-S Chr3 13972555 13972556 0 0 Deletion 1 HOMO FN4398-S Chr3 20647571 20647594 0 0 Deletion 23 HOMO LOC_Os03g37250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4398-S Chr3 33240708 C-G 0 0 Single Base Substitution 0 INTRON HET FN4398-S Chr3 35256695 T-G 0 0 Single Base Substitution 0 INTRON HET FN4398-S Chr3 5212426 5212427 0 0 Deletion 1 HOMO FN4398-S Chr4 13911779 13911779 0 0 Insertion 1 HET FN4398-S Chr4 19902477 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g32940 Leucine Rich Repeat family protein, expressed FN4398-S Chr4 20974079 20974079 0 0 Insertion 6 HET FN4398-S Chr4 27294862 27294863 0 0 Deletion 1 HOMO FN4398-S Chr4 33621001 33644000 0 0 Deletion 23000 HET LOC_Os04g56380 transposon protein, putative, unclassified, expressed FN4398-S Chr4 33621001 33644000 0 0 Deletion 23000 HET LOC_Os04g56390 expressed protein FN4398-S Chr4 33621001 33644000 0 0 Deletion 23000 HET LOC_Os04g56400 glutamine synthetase, catalytic domain containing protein, expressed FN4398-S Chr4 33621001 33644000 0 0 Deletion 23000 HET LOC_Os04g56405 expressed protein FN4398-S Chr4 33621001 33644000 0 0 Deletion 23000 HET LOC_Os04g56420 retrotransposon protein, putative, unclassified, expressed FN4398-S Chr4 33621001 33644000 0 0 Deletion 23000 HET LOC_Os04g56430 cysteine-rich receptor-like protein kinase, putative, expressed FN4398-S Chr4 5364383 5364384 0 0 Deletion 1 HOMO FN4398-S Chr4 68594 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4398-S Chr4 8312097 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g14790 FAD dependent oxidoreductase domain containing protein, expressed FN4398-S Chr5 10082770 10082770 0 0 Insertion 1 HET FN4398-S Chr5 12670703 12670722 0 0 Deletion 19 HOMO FN4398-S Chr5 14614001 14630000 0 0 Deletion 16000 HET LOC_Os05g25210 expressed protein FN4398-S Chr5 14614001 14630000 0 0 Deletion 16000 HET LOC_Os05g25220 expressed protein FN4398-S Chr5 14631001 14673000 0 0 Deletion 42000 HET LOC_Os05g25230 hypothetical protein FN4398-S Chr5 14631001 14673000 0 0 Deletion 42000 HET LOC_Os05g25240 expressed protein FN4398-S Chr5 14631001 14673000 0 0 Deletion 42000 HET LOC_Os05g25250 expressed protein FN4398-S Chr5 14631001 14673000 0 0 Deletion 42000 HET LOC_Os05g25260 AP2 domain containing protein, expressed FN4398-S Chr5 14631001 14673000 0 0 Deletion 42000 HET LOC_Os05g25270 expressed protein FN4398-S Chr5 21490349 21490349 0 0 Insertion 1 HET FN4398-S Chr5 21744455 21744456 0 0 Deletion 1 HOMO FN4398-S Chr5 23275882 T-A 0 0 Single Base Substitution 0 INTRON HET FN4398-S Chr5 25803553 25803555 0 0 Deletion 2 HOMO FN4398-S Chr5 27370986 27370987 0 0 Deletion 1 HOMO FN4398-S Chr5 4559257 4559270 0 0 Deletion 13 HOMO FN4398-S Chr5 8423437 8423441 0 0 Deletion 4 HOMO FN4398-S Chr5 9822126 9822127 0 0 Deletion 1 HOMO FN4398-S Chr6 11647912 11647913 0 0 Deletion 1 HOMO FN4398-S Chr6 15740870 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g27800 tm-1GCR237 protein, putative, expressed FN4398-S Chr6 15944304 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4398-S Chr6 19978990 19978990 0 0 Insertion 1 HET FN4398-S Chr6 20045737 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4398-S Chr6 7359321 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4398-S Chr7 11126842 11126988 0 0 Inversion 147 HET FN4398-S Chr7 1437986 G-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN4398-S Chr7 20392196 20392202 0 0 Deletion 6 HOMO FN4398-S Chr7 21224128 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g35480 glucan endo-1,3-beta-glucosidase precursor, putative, expressed FN4398-S Chr7 21893001 21993000 0 0 Deletion 100000 HET LOC_Os07g36600 universal stress protein domain containing protein, putative, expressed FN4398-S Chr7 21893001 21993000 0 0 Deletion 100000 HET LOC_Os07g36610 CSLF9 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN4398-S Chr7 21893001 21993000 0 0 Deletion 100000 HET LOC_Os07g36630 CSLF8 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN4398-S Chr7 21893001 21993000 0 0 Deletion 100000 HET LOC_Os07g36640 expressed protein FN4398-S Chr7 21893001 21993000 0 0 Deletion 100000 HET LOC_Os07g36660 retrotransposon protein, putative, unclassified, expressed FN4398-S Chr7 21893001 21993000 0 0 Deletion 100000 HET LOC_Os07g36670 retrotransposon protein, putative, unclassified, expressed FN4398-S Chr7 21893001 21993000 0 0 Deletion 100000 HET LOC_Os07g36680 expressed protein FN4398-S Chr7 21893001 21993000 0 0 Deletion 100000 HET LOC_Os07g36690 CSLF2 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN4398-S Chr7 21893001 21993000 0 0 Deletion 100000 HET LOC_Os07g36700 CSLF1 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN4398-S Chr7 21999001 22081000 0 0 Deletion 82000 HET LOC_Os07g36720 retrotransposon protein, putative, unclassified, expressed FN4398-S Chr7 21999001 22081000 0 0 Deletion 82000 HET LOC_Os07g36730 expressed protein FN4398-S Chr7 21999001 22081000 0 0 Deletion 82000 HET LOC_Os07g36740 CSLF4 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN4398-S Chr7 21999001 22081000 0 0 Deletion 82000 HET LOC_Os07g36750 CSLF3 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN4398-S Chr7 21999001 22081000 0 0 Deletion 82000 HET LOC_Os07g36760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4398-S Chr7 21999001 22081000 0 0 Deletion 82000 HET LOC_Os07g36770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4398-S Chr7 21999001 22081000 0 0 Deletion 82000 HET LOC_Os07g36780 S-domain receptor-like protein kinase, putative, expressed FN4398-S Chr7 21999001 22081000 0 0 Deletion 82000 HET LOC_Os07g36790 hypothetical protein FN4398-S Chr7 21999001 22081000 0 0 Deletion 82000 HET LOC_Os07g36800 UPF0041 domain containing protein, putative, expressed FN4398-S Chr7 21999001 22081000 0 0 Deletion 82000 HET LOC_Os07g36810 expressed protein FN4398-S Chr7 21999001 22081000 0 0 Deletion 82000 HET LOC_Os07g36820 uncharacterized Cys-rich domain containing protein, putative, expressed FN4398-S Chr7 21999001 22081000 0 0 Deletion 82000 HET LOC_Os07g36830 OsFBX250 - F-box domain containing protein, expressed FN4398-S Chr7 21999001 22081000 0 0 Deletion 82000 HET LOC_Os07g36840 OsFBX251 - F-box domain containing protein, expressed FN4398-S Chr7 21999001 22081000 0 0 Deletion 82000 HET LOC_Os07g36850 transposon protein, putative, Pong sub-class, expressed FN4398-S Chr7 21999001 22081000 0 0 Deletion 82000 HET LOC_Os07g36860 expressed protein FN4398-S Chr7 26799850 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4398-S Chr7 7020946 7020956 0 0 Deletion 10 HOMO FN4398-S Chr7 8445864 8445864 0 0 Insertion 1 HOMO FN4398-S Chr8 11170988 11170988 0 0 Insertion 1 HET FN4398-S Chr8 11179098 11179098 0 0 Insertion 1 HET FN4398-S Chr8 11643873 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4398-S Chr8 16535397 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4398-S Chr8 17746158 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4398-S Chr8 17799605 17799610 0 0 Deletion 5 HOMO LOC_Os08g29070 retrotransposon protein, putative, unclassified FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34050 phosphofructokinase, putative, expressed FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34060 DUF1336 domain containing protein, expressed FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34070 DCN1, putative, expressed FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34080 retrotransposon protein, putative, unclassified, expressed FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34090 retrotransposon protein, putative, unclassified, expressed FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34100 conserved hypothetical protein FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34110 retrotransposon protein, putative, Ty1-copia subclass, expressed FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34120 expressed protein FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34130 mitochondrial glycoprotein, putative, expressed FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34140 vesicle transport v-SNARE protein, putative, expressed FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34150 OsTIL-2 Temperature-induced lipocalin-2, expressed FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34160 CAF1 family ribonuclease containing protein, putative, expressed FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34170 CAF1 family ribonuclease containing protein, putative, expressed FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34180 expressed protein FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34190 stromal cell-derived factor 2-like protein precursor, putative, expressed FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34200 expressed protein FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34210 aldehyde dehydrogenase, putative, expressed FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34220 omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34230 retrotransposon protein, putative, unclassified, expressed FN4398-S Chr8 21327001 21470000 0 0 Deletion 143000 HET LOC_Os08g34240 CAMK_KIN1/SNF1/Nim1_like.33 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN4398-S Chr8 21501001 21529000 0 0 Deletion 28000 HET LOC_Os08g34270 expressed protein FN4398-S Chr8 21501001 21529000 0 0 Deletion 28000 HET LOC_Os08g34280 cinnamoyl-CoA reductase, putative, expressed FN4398-S Chr8 21501001 21529000 0 0 Deletion 28000 HET LOC_Os08g34290 chorismate mutase, chloroplast precursor, putative, expressed FN4398-S Chr8 21501001 21529000 0 0 Deletion 28000 HET LOC_Os08g34300 retrotransposon protein, putative, unclassified, expressed FN4398-S Chr8 48789 48793 0 0 Deletion 4 HOMO FN4398-S Chr9 13056653 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4398-S Chr9 21403636 21403637 0 0 Deletion 1 HOMO FN4398-S Chr9 7137081 7137082 0 0 Deletion 1 HOMO