FN4405-S Chr1 20401969 20401985 0 0 Deletion 16 HOMO FN4405-S Chr1 22045649 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4405-S Chr1 23620500 23620567 0 0 Deletion 67 HOMO FN4405-S Chr1 26963525 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os01g47170 retrotransposon protein, putative, unclassified, expressed FN4405-S Chr1 31793625 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr1 32097511 T-A 0 0 Single Base Substitution 0 INTRON HET FN4405-S Chr1 35556551 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr1 38121089 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4405-S Chr1 40684332 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr1 5213622 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4405-S Chr1 6454154 6454157 0 0 Deletion 3 HOMO FN4405-S Chr10 15624044 15624053 0 0 Deletion 9 HOMO LOC_Os10g30080 xylosyltransferase, putative, expressed FN4405-S Chr10 17684781 G-A 0 0 Single Base Substitution 0 INTRON HET FN4405-S Chr10 22659914 22659914 0 0 Insertion 2 HET FN4405-S Chr10 4560409 4560410 0 0 Deletion 1 HOMO FN4405-S Chr10 8331442 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g16720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4405-S Chr11 14788412 14788652 0 0 Inversion 241 HET FN4405-S Chr11 159877 159877 0 0 Insertion 37 HET FN4405-S Chr11 18672532 18672535 0 0 Deletion 3 HOMO FN4405-S Chr11 21758936 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g36880 retrotransposon protein, putative, unclassified, expressed FN4405-S Chr11 27711872 27712104 0 0 Inversion 233 HET FN4405-S Chr11 3136781 3136880 0 0 Inversion 100 HET FN4405-S Chr11 9295729 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4405-S Chr11 9295730 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4405-S Chr12 3253054 3253064 0 0 Deletion 10 HOMO LOC_Os12g06680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4405-S Chr12 5143001 5171000 0 0 Deletion 28000 HOMO LOC_Os12g09739 pollen signalling protein with adenylyl cyclase activity, putative, expressed FN4405-S Chr12 5143001 5171000 0 0 Deletion 28000 HOMO LOC_Os12g09760 retrotransposon protein, putative, unclassified, expressed FN4405-S Chr12 6994632 7015054 0 0 Inversion 20423 HET FN4405-S Chr12 763826 A-G 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN4405-S Chr2 10835296 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr2 10835298 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr2 14153795 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr2 24968914 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr2 30677010 31543800 0 0 Inversion 866791 HET FN4405-S Chr2 30686467 31543822 0 0 Inversion 857356 HET FN4405-S Chr2 31922863 31922864 0 0 Deletion 1 HOMO FN4405-S Chr2 5636488 5636488 0 0 Insertion 1 HET FN4405-S Chr3 14371092 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr3 22826219 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g41070 metal transporter Nramp2, putative, expressed FN4405-S Chr3 23876614 23876623 0 0 Deletion 9 HOMO FN4405-S Chr3 23997617 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr3 24505830 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4405-S Chr3 27118963 27118965 0 0 Deletion 2 HOMO FN4405-S Chr3 33538764 33538770 0 0 Deletion 6 HOMO LOC_Os03g58910 expressed protein FN4405-S Chr3 33615001 33631000 0 0 Deletion 16000 HET LOC_Os03g59050 DEAD-box ATP-dependent RNA helicase, putative, expressed FN4405-S Chr3 33615001 33631000 0 0 Deletion 16000 HET LOC_Os03g59060 OsPP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2, expressed FN4405-S Chr3 33615001 33631000 0 0 Deletion 16000 HET LOC_Os03g59070 phosphatase, putative, expressed FN4405-S Chr3 36251740 T-C 0 0 Single Base Substitution 0 INTRON HET FN4405-S Chr3 7677076 T-C 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN4405-S Chr4 10305428 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4405-S Chr4 10305429 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g18640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4405-S Chr4 133001 162000 0 0 Deletion 29000 HET LOC_Os04g01180 retrotransposon protein, putative, LINE subclass, expressed FN4405-S Chr4 133001 162000 0 0 Deletion 29000 HET LOC_Os04g01190 retrotransposon protein, putative, unclassified, expressed FN4405-S Chr4 133001 162000 0 0 Deletion 29000 HET LOC_Os04g01200 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4405-S Chr4 133001 162000 0 0 Deletion 29000 HET LOC_Os04g01210 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4405-S Chr4 166703 Chr2 15134549 0 Translocation 0 HET FN4405-S Chr4 19291667 C-T 0 0 Single Base Substitution 0 INTRON HET FN4405-S Chr4 19748827 G-A 0 0 Single Base Substitution 0 INTRON HET FN4405-S Chr4 28826001 28869000 0 0 Deletion 43000 HOMO LOC_Os04g48360 expressed protein FN4405-S Chr4 28826001 28869000 0 0 Deletion 43000 HOMO LOC_Os04g48370 RNA polymerase IV subunit, putative, expressed FN4405-S Chr4 28826001 28869000 0 0 Deletion 43000 HOMO LOC_Os04g48375 WD domain, G-beta repeat domain containing protein, expressed FN4405-S Chr4 28826001 28869000 0 0 Deletion 43000 HOMO LOC_Os04g48380 lysM domain containing protein, putative, expressed FN4405-S Chr4 28826001 28869000 0 0 Deletion 43000 HOMO LOC_Os04g48390 uncharacterized membrane protein, putative, expressed FN4405-S Chr4 28827023 Chr2 15134547 0 Translocation 0 HET LOC_Os02g47230 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed FN4405-S Chr4 28868945 Chr2 15134159 0 Translocation 0 HET LOC_Os04g48390 uncharacterized membrane protein, putative, expressed FN4405-S Chr4 31515190 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4405-S Chr4 32588588 32588597 0 0 Deletion 9 HOMO FN4405-S Chr4 34449109 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr4 472483 472487 0 0 Deletion 4 HOMO LOC_Os04g01710 cysteine proteinase At4g11310 precursor, putative, expressed FN4405-S Chr4 4775112 4775123 0 0 Deletion 11 HOMO FN4405-S Chr4 8135675 8135678 0 0 Deletion 3 HOMO FN4405-S Chr5 10597715 10597717 0 0 Deletion 2 HOMO FN4405-S Chr5 15370221 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr5 18486165 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr5 21536851 C-T 0 0 Single Base Substitution 0 INTRON HET FN4405-S Chr5 23222477 23222586 0 0 Inversion 110 HET FN4405-S Chr5 2349886 2349891 0 0 Deletion 5 HOMO FN4405-S Chr5 28196703 28196837 0 0 Inversion 135 HET FN4405-S Chr5 5936905 5936906 0 0 Deletion 1 HOMO FN4405-S Chr5 9911059 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr6 10398621 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g17910 NBS-LRR disease resistance protein, putative, expressed FN4405-S Chr6 14787878 14788038 0 0 Inversion 161 HET FN4405-S Chr6 16883964 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr6 24192791 24503176 0 0 Inversion 310386 HOMO LOC_Os06g41030 DUF1680 domain containing protein, putative, expressed FN4405-S Chr6 24192803 24503185 0 0 Inversion 310383 HOMO LOC_Os06g41030 DUF1680 domain containing protein, putative, expressed FN4405-S Chr6 25663260 25663265 0 0 Deletion 5 HOMO FN4405-S Chr7 17584727 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr7 17804335 17804336 0 0 Deletion 1 HOMO FN4405-S Chr7 20663169 20663169 0 0 Insertion 1 HET LOC_Os07g34460 transposon protein, putative, unclassified, expressed FN4405-S Chr7 21633553 21633553 0 0 Insertion 1 HET FN4405-S Chr7 24063811 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4405-S Chr7 25442140 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN4405-S Chr7 25442141 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN4405-S Chr7 25631696 25631699 0 0 Deletion 3 HOMO FN4405-S Chr7 3046169 3046180 0 0 Deletion 11 HOMO FN4405-S Chr7 9981329 9981329 0 0 Insertion 14 HET FN4405-S Chr8 13850808 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr8 22422706 22422707 0 0 Deletion 1 HOMO FN4405-S Chr8 28419710 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4405-S Chr9 18313692 18313692 0 0 Insertion 12 HET FN4405-S Chr9 2373010 2373011 0 0 Deletion 1 HOMO FN4405-S Chr9 4258507 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4405-S Chr9 5645227 C-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4405-S Chr9 9848752 9848760 0 0 Deletion 8 HOMO