FN4449-S Chr1 10087630 10087630 0 0 Insertion 1 HET FN4449-S Chr1 12538446 12538469 0 0 Deletion 23 HOMO FN4449-S Chr1 15701489 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4449-S Chr1 18776225 18776225 0 0 Insertion 6 HET FN4449-S Chr1 19646812 19646816 0 0 Deletion 4 HOMO FN4449-S Chr1 2148084 2148084 0 0 Insertion 1 HET FN4449-S Chr1 26334509 26334527 0 0 Deletion 18 HOMO FN4449-S Chr1 29486902 29486905 0 0 Deletion 3 HOMO LOC_Os01g51290 protein kinase family protein, putative, expressed FN4449-S Chr1 30351652 30351652 0 0 Insertion 1 HET FN4449-S Chr1 32157225 32157225 0 0 Insertion 1 HET FN4449-S Chr1 32403175 32403179 0 0 Deletion 4 HOMO FN4449-S Chr1 37614432 37614433 0 0 Deletion 1 HOMO FN4449-S Chr1 3769371 3769371 0 0 Insertion 1 HET FN4449-S Chr1 38858773 38858773 0 0 Insertion 1 HET FN4449-S Chr1 40603143 40603144 0 0 Deletion 1 HOMO FN4449-S Chr1 40939340 40939340 0 0 Insertion 1 HET LOC_Os01g70720 expressed protein FN4449-S Chr1 41659181 41659182 0 0 Deletion 1 HOMO FN4449-S Chr1 41786805 41786805 0 0 Insertion 1 HET FN4449-S Chr1 43000711 43000711 0 0 Insertion 1 HET LOC_Os01g74230 retrotransposon protein, putative, unclassified, expressed FN4449-S Chr1 5211718 5211719 0 0 Deletion 1 HOMO FN4449-S Chr1 7903367 7903368 0 0 Deletion 1 HOMO FN4449-S Chr1 827287 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g02530 retrotransposon protein, putative, unclassified, expressed FN4449-S Chr10 10339461 10339462 0 0 Deletion 1 HOMO FN4449-S Chr10 12168206 12168206 0 0 Insertion 1 HET FN4449-S Chr10 12477069 12477069 0 0 Insertion 1 HET FN4449-S Chr10 13490234 13490235 0 0 Deletion 1 HOMO LOC_Os10g26040 retrotransposon protein, putative, unclassified, expressed FN4449-S Chr10 15254659 15254660 0 0 Deletion 1 HOMO FN4449-S Chr10 16822796 16822796 0 0 Insertion 1 HET FN4449-S Chr10 17285826 17285849 0 0 Deletion 23 HOMO LOC_Os10g33010 retrotransposon protein, putative, unclassified, expressed FN4449-S Chr10 1770 1770 0 0 Insertion 1 HOMO FN4449-S Chr10 20652040 20652040 0 0 Insertion 1 HET FN4449-S Chr10 342815 342815 0 0 Insertion 1 HET FN4449-S Chr10 3505707 3505708 0 0 Deletion 1 HOMO FN4449-S Chr10 3555803 3555804 0 0 Deletion 1 HOMO FN4449-S Chr10 4567032 4567033 0 0 Deletion 1 HOMO FN4449-S Chr10 5019579 5019585 0 0 Deletion 6 HOMO FN4449-S Chr10 8114330 8114352 0 0 Deletion 22 HOMO FN4449-S Chr10 8388381 8388381 0 0 Insertion 1 HET FN4449-S Chr11 13147258 G-A 0 0 Single Base Substitution 0 INTRON HET FN4449-S Chr11 14083774 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4449-S Chr11 17440195 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g30000 retrotransposon protein, putative, unclassified, expressed FN4449-S Chr11 21078793 21078794 0 0 Deletion 1 HOMO FN4449-S Chr11 21415784 21415784 0 0 Insertion 1 HET FN4449-S Chr11 22104033 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4449-S Chr11 23654403 23654405 0 0 Deletion 2 HOMO FN4449-S Chr11 25683123 25683123 0 0 Insertion 1 HET FN4449-S Chr11 2662104 2662104 0 0 Insertion 2 HET FN4449-S Chr11 27044991 27044991 0 0 Insertion 1 HET FN4449-S Chr11 27088360 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g44750 retrotransposon protein, putative, unclassified, expressed FN4449-S Chr11 28105288 28105288 0 0 Insertion 4 HET FN4449-S Chr11 3124201 3246605 0 0 Inversion 122405 HOMO LOC_Os11g06670 expressed protein FN4449-S Chr11 3124207 3246605 0 0 Inversion 122399 HOMO LOC_Os11g06670 expressed protein FN4449-S Chr11 330432 330433 0 0 Deletion 1 HOMO FN4449-S Chr11 3984043 3984044 0 0 Deletion 1 HOMO FN4449-S Chr11 6396226 6396264 0 0 Deletion 38 HOMO FN4449-S Chr11 7647785 7647786 0 0 Deletion 1 HOMO FN4449-S Chr11 9427622 Chr1 35138890 0 Translocation 0 HET FN4449-S Chr12 11004110 11004111 0 0 Deletion 1 HOMO FN4449-S Chr12 11007901 11007901 0 0 Insertion 2 HOMO FN4449-S Chr12 12059218 12059218 0 0 Insertion 1 HET FN4449-S Chr12 12663077 12663077 0 0 Insertion 1 HET FN4449-S Chr12 14279212 14279212 0 0 Insertion 1 HET LOC_Os12g24890 retrotransposon protein, putative, Ty3-gypsy subclass FN4449-S Chr12 14321926 14321926 0 0 Insertion 2 HET FN4449-S Chr12 14877261 14877261 0 0 Insertion 1 HET FN4449-S Chr12 15430960 15430962 0 0 Deletion 2 HOMO FN4449-S Chr12 15917231 15917233 0 0 Deletion 2 HOMO LOC_Os12g27120 retrotransposon protein, putative, unclassified, expressed FN4449-S Chr12 19523833 19523839 0 0 Deletion 6 HOMO FN4449-S Chr12 19817004 Chr7 23642860 0 Translocation 0 HET FN4449-S Chr12 19817163 Chr7 23634888 0 Translocation 0 HET FN4449-S Chr12 22449055 G-A 0 0 Single Base Substitution 0 INTRON HET FN4449-S Chr12 25668526 25668533 0 0 Deletion 7 HOMO FN4449-S Chr12 3518564 3518565 0 0 Deletion 1 HOMO FN4449-S Chr12 7456734 7456735 0 0 Deletion 1 HOMO FN4449-S Chr2 1351432 1351439 0 0 Deletion 7 HOMO FN4449-S Chr2 1358874 1358890 0 0 Deletion 16 HOMO FN4449-S Chr2 14840393 14840393 0 0 Insertion 1 HET FN4449-S Chr2 15465818 15465822 0 0 Deletion 4 HOMO FN4449-S Chr2 17147683 17147684 0 0 Deletion 1 HOMO FN4449-S Chr2 17825854 17825854 0 0 Insertion 1 HET FN4449-S Chr2 19112550 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g32360 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4449-S Chr2 20228279 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN4449-S Chr2 21353744 21353745 0 0 Deletion 1 HOMO FN4449-S Chr2 23212273 23212274 0 0 Deletion 1 HOMO FN4449-S Chr2 31336745 31336780 0 0 Deletion 35 HOMO FN4449-S Chr2 32483158 32483158 0 0 Insertion 1 HET FN4449-S Chr2 34828664 34828695 0 0 Deletion 31 HOMO LOC_Os02g56830 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4449-S Chr2 379494 379494 0 0 Insertion 1 HET FN4449-S Chr2 4801609 4801681 0 0 Inversion 73 HET FN4449-S Chr2 7239001 7284000 0 0 Deletion 45000 HOMO LOC_Os02g13520 OsIAA7 - Auxin-responsive Aux/IAA gene family member, expressed FN4449-S Chr2 7239001 7284000 0 0 Deletion 45000 HOMO LOC_Os02g13530 40S ribosomal protein S24, putative, expressed FN4449-S Chr2 7239001 7284000 0 0 Deletion 45000 HOMO LOC_Os02g13540 expressed protein FN4449-S Chr2 7239001 7284000 0 0 Deletion 45000 HOMO LOC_Os02g13550 hypothetical protein FN4449-S Chr2 7239001 7284000 0 0 Deletion 45000 HOMO LOC_Os02g13555 expressed protein FN4449-S Chr2 7239001 7284000 0 0 Deletion 45000 HOMO LOC_Os02g13560 transporter family protein, putative, expressed FN4449-S Chr2 7239001 7284000 0 0 Deletion 45000 HOMO LOC_Os02g13570 kinesin motor protein-related, putative, expressed FN4449-S Chr2 7239001 7284000 0 0 Deletion 45000 HOMO LOC_Os02g13580 kinesin motor domain containing protein, expressed FN4449-S Chr2 8220608 8220691 0 0 Deletion 83 HOMO FN4449-S Chr2 919991 919991 0 0 Insertion 1 HET FN4449-S Chr2 934414 934418 0 0 Deletion 4 HOMO FN4449-S Chr2 9354444 9354444 0 0 Insertion 1 HET FN4449-S Chr3 10134183 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4449-S Chr3 13469533 13469533 0 0 Insertion 2 HET FN4449-S Chr3 14256100 14256102 0 0 Deletion 2 HOMO FN4449-S Chr3 17767447 17767450 0 0 Deletion 3 HOMO LOC_Os03g31200 retrotransposon protein, putative, Ty1-copia subclass, expressed FN4449-S Chr3 17945406 17945407 0 0 Deletion 1 HOMO FN4449-S Chr3 18235260 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4449-S Chr3 18235261 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4449-S Chr3 18742233 18742233 0 0 Insertion 2 HET FN4449-S Chr3 19130870 19130870 0 0 Insertion 1 HET FN4449-S Chr3 28121513 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g49400 ethylene-insensitive protein, putative, expressed FN4449-S Chr3 28121514 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4449-S Chr3 288499 288499 0 0 Insertion 1 HET FN4449-S Chr3 31582364 31582364 0 0 Insertion 2 HET FN4449-S Chr3 3783478 3783478 0 0 Insertion 2 HET FN4449-S Chr3 4273598 4273598 0 0 Insertion 1 HET FN4449-S Chr3 4467224 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4449-S Chr3 6414598 6414599 0 0 Deletion 1 HOMO FN4449-S Chr3 6477461 6477463 0 0 Deletion 2 HOMO FN4449-S Chr3 6617328 6617328 0 0 Insertion 60 HET FN4449-S Chr3 899961 899962 0 0 Deletion 1 HOMO FN4449-S Chr3 9389501 9389501 0 0 Insertion 1 HET FN4449-S Chr4 10026350 10026351 0 0 Deletion 1 HOMO FN4449-S Chr4 10301809 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4449-S Chr4 10868421 10868440 0 0 Deletion 19 HOMO FN4449-S Chr4 11721733 11721733 0 0 Insertion 1 HET FN4449-S Chr4 12894619 12894620 0 0 Deletion 1 HOMO FN4449-S Chr4 13117972 13117975 0 0 Deletion 3 HOMO FN4449-S Chr4 13757532 13757532 0 0 Insertion 1 HET FN4449-S Chr4 14166707 14166708 0 0 Deletion 1 HOMO FN4449-S Chr4 15883567 15883568 0 0 Deletion 1 HOMO FN4449-S Chr4 19386259 19386259 0 0 Insertion 1 HET FN4449-S Chr4 19532256 19532256 0 0 Insertion 3 HET FN4449-S Chr4 20095630 20095630 0 0 Insertion 1 HET FN4449-S Chr4 22767490 22767491 0 0 Deletion 1 HOMO FN4449-S Chr4 22986098 22986098 0 0 Insertion 1 HET FN4449-S Chr4 23752745 A-T 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN4449-S Chr4 23752746 G-T 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN4449-S Chr4 24227899 24227899 0 0 Insertion 1 HET FN4449-S Chr4 2586849 2586849 0 0 Insertion 1 HET FN4449-S Chr4 2631656 2631656 0 0 Insertion 1 HET FN4449-S Chr4 26845606 A-G 0 0 Single Base Substitution 0 INTRON HET FN4449-S Chr4 30486729 30486729 0 0 Insertion 1 HET FN4449-S Chr4 31202371 31202371 0 0 Insertion 1 HET FN4449-S Chr4 33035188 33035188 0 0 Insertion 1 HET LOC_Os04g55530 retrotransposon protein, putative, unclassified, expressed FN4449-S Chr4 5345561 5345573 0 0 Deletion 12 HOMO LOC_Os04g09940 retrotransposon protein, putative, unclassified FN4449-S Chr4 6182618 6182619 0 0 Deletion 1 HOMO FN4449-S Chr4 7116361 7116363 0 0 Deletion 2 HOMO FN4449-S Chr4 8954481 8954481 0 0 Insertion 1 HET FN4449-S Chr4 9227864 9227864 0 0 Insertion 1 HET FN4449-S Chr5 10614492 Chr1 14983725 0 Translocation 0 HET FN4449-S Chr5 11750352 11750353 0 0 Deletion 1 HOMO FN4449-S Chr5 14559802 14559803 0 0 Deletion 1 HOMO FN4449-S Chr5 19536900 19536901 0 0 Deletion 1 HOMO FN4449-S Chr5 20358272 20358272 0 0 Insertion 2 HET FN4449-S Chr5 22176739 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4449-S Chr5 23979148 A-G 0 0 Single Base Substitution 0 INTRON HET FN4449-S Chr5 24045519 24045520 0 0 Deletion 1 HOMO FN4449-S Chr5 26351526 26351526 0 0 Insertion 4 HET FN4449-S Chr5 3884937 3884937 0 0 Insertion 1 HET LOC_Os05g07310 transposon protein, putative, unclassified, expressed FN4449-S Chr5 7668599 7668600 0 0 Deletion 1 HOMO FN4449-S Chr5 8030655 8030655 0 0 Insertion 1 HET FN4449-S Chr5 9730801 9730801 0 0 Insertion 47 HET FN4449-S Chr5 9848209 9848211 0 0 Deletion 2 HOMO FN4449-S Chr6 110818 110819 0 0 Deletion 1 HOMO FN4449-S Chr6 11687914 11687915 0 0 Deletion 1 HOMO FN4449-S Chr6 12945310 C-A 0 0 Single Base Substitution 0 INTRON HET FN4449-S Chr6 14976864 14976874 0 0 Deletion 10 HOMO FN4449-S Chr6 16020950 16020952 0 0 Deletion 2 HOMO FN4449-S Chr6 17169333 17169333 0 0 Insertion 1 HET FN4449-S Chr6 18648236 18648236 0 0 Insertion 1 HET LOC_Os06g32060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4449-S Chr6 19684845 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g33830 transposon protein, putative, CACTA, En/Spm sub-class FN4449-S Chr6 20793854 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4449-S Chr6 2111442 2111442 0 0 Insertion 2 HET FN4449-S Chr6 21368303 21368304 0 0 Deletion 1 HOMO FN4449-S Chr6 21584939 21584940 0 0 Deletion 1 HOMO FN4449-S Chr6 21926778 21926779 0 0 Deletion 1 HOMO FN4449-S Chr6 23227396 T-A 0 0 Single Base Substitution 0 INTRON HET FN4449-S Chr6 24056668 24056669 0 0 Deletion 1 HOMO FN4449-S Chr6 24163428 24163434 0 0 Deletion 6 HOMO FN4449-S Chr6 24613610 24613610 0 0 Insertion 4 HET FN4449-S Chr6 27357948 27357948 0 0 Insertion 7 HET LOC_Os06g45270 transposon protein, putative, unclassified, expressed FN4449-S Chr6 27380786 27380786 0 0 Insertion 1 HET FN4449-S Chr6 27504575 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4449-S Chr6 28263849 28263850 0 0 Deletion 1 HOMO FN4449-S Chr6 29211191 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4449-S Chr6 450384 450385 0 0 Deletion 1 HOMO FN4449-S Chr6 4802 4802 0 0 Insertion 1 HET FN4449-S Chr6 5789500 5789500 0 0 Insertion 2 HET FN4449-S Chr6 5876529 5876530 0 0 Deletion 1 HOMO FN4449-S Chr6 63054 63056 0 0 Deletion 2 HOMO FN4449-S Chr7 1004006 1004007 0 0 Deletion 1 HOMO FN4449-S Chr7 11842300 11842357 0 0 Deletion 57 HOMO FN4449-S Chr7 14696082 14696083 0 0 Deletion 1 HOMO LOC_Os07g25630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4449-S Chr7 18195682 18195682 0 0 Insertion 1 HET LOC_Os07g30740 retrotransposon protein, putative, Ty3-gypsy subclass FN4449-S Chr7 19324814 19324815 0 0 Deletion 1 HOMO FN4449-S Chr7 20964053 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4449-S Chr7 21271320 21271322 0 0 Deletion 2 HOMO FN4449-S Chr7 23634914 23642874 0 0 Inversion 7961 HET LOC_Os07g39460 transposon protein, putative, unclassified, expressed FN4449-S Chr7 26147412 26147412 0 0 Insertion 5 HET FN4449-S Chr7 3654042 3654042 0 0 Insertion 1 HET FN4449-S Chr7 6490831 6490831 0 0 Insertion 1 HET FN4449-S Chr7 7927044 7927044 0 0 Insertion 1 HET FN4449-S Chr7 793143 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4449-S Chr7 9513202 9513202 0 0 Insertion 1 HET FN4449-S Chr8 10629545 T-G 0 0 Single Base Substitution 0 INTRON HOMO FN4449-S Chr8 12071665 12071665 0 0 Insertion 1 HET FN4449-S Chr8 12245075 12245075 0 0 Insertion 1 HET FN4449-S Chr8 12441510 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g20700 retrotransposon protein, putative, unclassified FN4449-S Chr8 13594638 13594639 0 0 Deletion 1 HOMO FN4449-S Chr8 13636443 13636490 0 0 Deletion 47 HOMO FN4449-S Chr8 14434942 14434942 0 0 Insertion 1 HET LOC_Os08g23840 retrotransposon protein, putative, Ty3-gypsy subclass FN4449-S Chr8 14705882 14705885 0 0 Deletion 3 HOMO FN4449-S Chr8 15235841 15235842 0 0 Deletion 1 HOMO FN4449-S Chr8 15300347 15300347 0 0 Insertion 2 HET FN4449-S Chr8 15303552 15303562 0 0 Deletion 10 HOMO FN4449-S Chr8 15427187 15427188 0 0 Deletion 1 HOMO FN4449-S Chr8 18772592 18772592 0 0 Insertion 13 HET FN4449-S Chr8 19393944 19393944 0 0 Insertion 62 HET FN4449-S Chr8 19525714 19525715 0 0 Deletion 1 HOMO FN4449-S Chr8 22386121 22386121 0 0 Insertion 1 HET FN4449-S Chr8 23816574 23816575 0 0 Deletion 1 HOMO FN4449-S Chr8 2719368 2719368 0 0 Insertion 2 HET FN4449-S Chr8 4190770 4190770 0 0 Insertion 1 HET FN4449-S Chr8 6369429 6369430 0 0 Deletion 1 HOMO FN4449-S Chr8 6447731 6447731 0 0 Insertion 1 HET FN4449-S Chr8 6927215 6927216 0 0 Deletion 1 HOMO FN4449-S Chr8 7844749 7844749 0 0 Insertion 1 HET FN4449-S Chr8 8362667 8362668 0 0 Deletion 1 HOMO FN4449-S Chr8 9866852 9866853 0 0 Deletion 1 HOMO LOC_Os08g16180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4449-S Chr8 9929270 9929271 0 0 Deletion 1 HOMO FN4449-S Chr9 12671266 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4449-S Chr9 13247897 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4449-S Chr9 13548782 13548946 0 0 Inversion 165 HET FN4449-S Chr9 14230796 14230797 0 0 Deletion 1 HOMO FN4449-S Chr9 16688905 16688906 0 0 Deletion 1 HOMO FN4449-S Chr9 1928159 1928159 0 0 Insertion 1 HET FN4449-S Chr9 22841025 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4449-S Chr9 3390118 3390119 0 0 Deletion 1 HOMO FN4449-S Chr9 4294966 4294968 0 0 Deletion 2 HOMO FN4449-S Chr9 583222 583222 0 0 Insertion 2 HET FN4449-S Chr9 6416295 6416296 0 0 Deletion 1 HOMO LOC_Os09g11500 retrotransposon protein, putative, unclassified, expressed FN4449-S Chr9 6822950 6822950 0 0 Insertion 1 HET FN4449-S Chr9 8728744 A-T 0 0 Single Base Substitution 0 INTRON HOMO