FN4466-S Chr1 10150633 10150634 0 0 Deletion 1 HOMO FN4466-S Chr1 13794001 13832000 0 0 Deletion 38000 HET LOC_Os01g24470 PHS1, putative, expressed FN4466-S Chr1 13794001 13832000 0 0 Deletion 38000 HET LOC_Os01g24480 DUF1399 containing protein, putative, expressed FN4466-S Chr1 13794001 13832000 0 0 Deletion 38000 HET LOC_Os01g24490 expressed protein FN4466-S Chr1 13794001 13832000 0 0 Deletion 38000 HET LOC_Os01g24500 expressed protein FN4466-S Chr1 13794001 13832000 0 0 Deletion 38000 HET LOC_Os01g24510 transposon protein, putative, CACTA, En/Spm sub-class FN4466-S Chr1 13794001 13832000 0 0 Deletion 38000 HET LOC_Os01g24520 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4466-S Chr1 13794001 13832000 0 0 Deletion 38000 HET LOC_Os01g24530 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4466-S Chr1 13838001 13861000 0 0 Deletion 23000 HET LOC_Os01g24550 fruit bromelain precursor, putative, expressed FN4466-S Chr1 13838001 13861000 0 0 Deletion 23000 HET LOC_Os01g24560 fruit bromelain precursor, putative, expressed FN4466-S Chr1 13838001 13861000 0 0 Deletion 23000 HET LOC_Os01g24570 fruit bromelain precursor, putative, expressed FN4466-S Chr1 13838001 13861000 0 0 Deletion 23000 HET LOC_Os01g24590 LTPL46 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN4466-S Chr1 13838001 13861000 0 0 Deletion 23000 HET LOC_Os01g24600 fruit bromelain precursor, putative, expressed FN4466-S Chr1 1825272 1825351 0 0 Deletion 79 HOMO FN4466-S Chr1 19284483 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr1 19330590 19330590 0 0 Insertion 1 HET FN4466-S Chr1 20441901 20441901 0 0 Insertion 1 HET FN4466-S Chr1 23755260 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr1 25174506 25174508 0 0 Deletion 2 HOMO LOC_Os01g43930 retrotransposon protein, putative, unclassified, expressed FN4466-S Chr1 27014758 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g47270 DUF1645 domain containing protein, putative, expressed FN4466-S Chr1 27939720 27939722 0 0 Deletion 2 HOMO FN4466-S Chr1 28805962 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr1 28814598 28814598 0 0 Insertion 3 HET FN4466-S Chr1 29175998 29176040 0 0 Deletion 42 HOMO LOC_Os01g50790 transposon protein, putative, unclassified, expressed FN4466-S Chr1 29640472 29640473 0 0 Deletion 1 HOMO FN4466-S Chr1 30126646 30126647 0 0 Deletion 1 HOMO LOC_Os01g52430 hAT dimerisation domain-containing protein, putative, expressed FN4466-S Chr1 30699386 30699386 0 0 Insertion 1 HET FN4466-S Chr1 32516251 T-C 0 0 Single Base Substitution 0 INTRON HET FN4466-S Chr1 33922001 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g58680 apurinic endonuclease-redox protein, putative, expressed FN4466-S Chr1 3401709 3401717 0 0 Deletion 8 HOMO LOC_Os01g07212 staphylococcal nuclease homologue, putative, expressed FN4466-S Chr1 39120498 39120516 0 0 Deletion 18 HOMO FN4466-S Chr1 706908 706925 0 0 Deletion 17 HOMO FN4466-S Chr10 1255092 1255093 0 0 Deletion 1 HOMO FN4466-S Chr10 15151887 Chr7 1473203 0 Translocation 0 HET LOC_Os07g26360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4466-S Chr10 15151887 Chr7 1473203 0 Translocation 0 HET LOC_Os10g29090 retrotransposon protein, putative, unclassified, expressed FN4466-S Chr10 21079344 21079348 0 0 Deletion 4 HOMO FN4466-S Chr10 2165624 2165624 0 0 Insertion 2 HET FN4466-S Chr10 6756997 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4466-S Chr11 11305409 Chr3 8275495 0 Translocation 0 HET LOC_Os11g19610 retrotransposon protein, putative, unclassified, expressed FN4466-S Chr11 18144085 Chr2 35610329 0 Translocation 0 HET FN4466-S Chr11 2519055 C-G 0 0 Single Base Substitution 0 INTRON HET FN4466-S Chr11 26982412 26982413 0 0 Deletion 1 HOMO FN4466-S Chr11 27968595 27968595 0 0 Insertion 1 HET FN4466-S Chr11 7580134 7580134 0 0 Insertion 2 HET FN4466-S Chr11 7920716 7920716 0 0 Insertion 2 HET FN4466-S Chr12 11648761 G-A 0 0 Single Base Substitution 0 INTRON HET FN4466-S Chr12 11952720 11952722 0 0 Deletion 2 HOMO FN4466-S Chr12 16841767 16841770 0 0 Deletion 3 HOMO FN4466-S Chr12 21692582 21773080 0 0 Inversion 80499 HOMO LOC_Os12g35670 RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed FN4466-S Chr12 21694593 C-G 0 0 Single Base Substitution 0 INTRON HET FN4466-S Chr12 21773001 21789000 0 0 Deletion 16000 HOMO LOC_Os12g35760 transposon protein, putative, unclassified, expressed FN4466-S Chr12 21773001 21789000 0 0 Deletion 16000 HOMO LOC_Os12g35770 expressed protein FN4466-S Chr12 2177958 2177959 0 0 Deletion 1 HOMO FN4466-S Chr12 23760671 23760671 0 0 Insertion 72 HET FN4466-S Chr12 2856680 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr12 4281938 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr12 683877 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr2 1118779 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr2 11845502 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN4466-S Chr2 12915939 12915943 0 0 Deletion 4 HOMO LOC_Os02g21730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4466-S Chr2 12985169 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4466-S Chr2 12985170 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4466-S Chr2 13455038 13455039 0 0 Deletion 1 HOMO LOC_Os02g22570 retrotransposon protein, putative, unclassified, expressed FN4466-S Chr2 16757935 16757937 0 0 Deletion 2 HOMO FN4466-S Chr2 28933418 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr3 11233465 11233478 0 0 Deletion 13 HOMO FN4466-S Chr3 12295487 12295488 0 0 Deletion 1 HOMO FN4466-S Chr3 21553602 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr3 24920867 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr3 26766884 26766884 0 0 Insertion 16 HET FN4466-S Chr3 31618995 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4466-S Chr3 32268990 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4466-S Chr3 4773395 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr3 7263065 7263076 0 0 Deletion 11 HOMO FN4466-S Chr3 8989108 8989109 0 0 Deletion 1 HOMO FN4466-S Chr4 10275426 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g18600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4466-S Chr4 10372738 10372738 0 0 Insertion 3 HET FN4466-S Chr4 1370481 1370481 0 0 Insertion 1 HET FN4466-S Chr4 13775750 13775750 0 0 Insertion 1 HOMO FN4466-S Chr4 16981874 16981877 0 0 Deletion 3 HOMO FN4466-S Chr4 18876328 C-T 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os04g31570 F-box protein interaction domain containing protein, expressed FN4466-S Chr4 206256 206257 0 0 Deletion 1 HOMO FN4466-S Chr4 23257618 23257638 0 0 Deletion 20 HOMO FN4466-S Chr4 23681155 23681155 0 0 Insertion 1 HET FN4466-S Chr4 26059208 26059209 0 0 Deletion 1 HOMO FN4466-S Chr4 29282402 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr4 31990410 A-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os04g53670 expressed protein FN4466-S Chr4 3350476 3350499 0 0 Deletion 23 HOMO FN4466-S Chr5 10138637 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr5 10432801 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr5 10649957 10649960 0 0 Deletion 3 HOMO FN4466-S Chr5 11102261 11102261 0 0 Insertion 2 HET FN4466-S Chr5 12204265 12204265 0 0 Insertion 1 HET FN4466-S Chr5 12879547 12879552 0 0 Deletion 5 HOMO FN4466-S Chr5 13274141 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN4466-S Chr5 20452037 20452048 0 0 Deletion 11 HOMO FN4466-S Chr5 21198001 21264000 0 0 Deletion 66000 HOMO LOC_Os05g35690 GASR6 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed FN4466-S Chr5 21198001 21264000 0 0 Deletion 66000 HOMO LOC_Os05g35700 expressed protein FN4466-S Chr5 21198001 21264000 0 0 Deletion 66000 HOMO LOC_Os05g35710 coiled-coil domain-containing protein 47 precursor, putative, expressed FN4466-S Chr5 21198001 21264000 0 0 Deletion 66000 HOMO LOC_Os05g35720 transmembrane protein 18, putative, expressed FN4466-S Chr5 21198001 21264000 0 0 Deletion 66000 HOMO LOC_Os05g35730 hydrolase, alpha/beta fold family domain containing protein, expressed FN4466-S Chr5 21198001 21264000 0 0 Deletion 66000 HOMO LOC_Os05g35740 subtilisin N-terminal Region family protein, expressed FN4466-S Chr5 21198001 21264000 0 0 Deletion 66000 HOMO LOC_Os05g35750 transposon protein, putative, unclassified FN4466-S Chr5 21198001 21264000 0 0 Deletion 66000 HOMO LOC_Os05g35760 serine/threonine-protein kinase SAPK4, putative, expressed FN4466-S Chr5 21198001 21264000 0 0 Deletion 66000 HOMO LOC_Os05g35770 serine/threonine-protein kinase SAPK4, putative, expressed FN4466-S Chr5 21198001 21264000 0 0 Deletion 66000 HOMO LOC_Os05g35780 expressed protein FN4466-S Chr5 21198001 21264000 0 0 Deletion 66000 HOMO LOC_Os05g35800 expressed protein FN4466-S Chr5 21198001 21264000 0 0 Deletion 66000 HOMO LOC_Os05g35810 expressed protein FN4466-S Chr5 21198001 21264000 0 0 Deletion 66000 HOMO LOC_Os05g35820 expressed protein FN4466-S Chr5 21198001 21264000 0 0 Deletion 66000 HOMO LOC_Os05g35830 expressed protein FN4466-S Chr5 21823814 21823814 0 0 Insertion 2 HET FN4466-S Chr5 22202970 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr5 23168241 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4466-S Chr5 23612939 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr5 29237157 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4466-S Chr5 29707326 Chr2 18202509 0 Translocation 0 HET LOC_Os05g51770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4466-S Chr5 3831408 3831408 0 0 Insertion 1 HET FN4466-S Chr5 3903176 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4466-S Chr5 5453462 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr6 10988216 10988216 0 0 Insertion 1 HET FN4466-S Chr6 11827213 11827213 0 0 Insertion 1 HET FN4466-S Chr6 13224438 13224439 0 0 Deletion 1 HOMO FN4466-S Chr6 1520509 1520510 0 0 Deletion 1 HOMO FN4466-S Chr6 15751423 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4466-S Chr6 19687794 19687799 0 0 Deletion 5 HOMO LOC_Os06g33840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4466-S Chr6 21474906 21474906 0 0 Insertion 1 HET FN4466-S Chr6 22462902 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr6 24734489 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN4466-S Chr6 25987424 25987462 0 0 Deletion 38 HOMO FN4466-S Chr6 27489317 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr6 30211584 30211584 0 0 Insertion 11 HET FN4466-S Chr6 31177988 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4466-S Chr6 5766826 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr7 10968349 10968350 0 0 Deletion 1 HOMO FN4466-S Chr7 11192707 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g18890 retrotransposon protein, putative, unclassified, expressed FN4466-S Chr7 11606100 11606105 0 0 Deletion 5 HOMO FN4466-S Chr7 20486854 20486938 0 0 Deletion 84 HOMO FN4466-S Chr7 22380316 Chr3 18876768 0 Translocation 0 HET FN4466-S Chr7 22380317 Chr3 18877003 0 Translocation 0 HET FN4466-S Chr7 22434571 22434571 0 0 Insertion 2 HET FN4466-S Chr7 24240108 24240108 0 0 Insertion 79 HET FN4466-S Chr7 24784941 24784941 0 0 Insertion 50 HET FN4466-S Chr7 733733 733734 0 0 Deletion 1 HOMO FN4466-S Chr7 7638010 Chr2 3798617 0 Translocation 0 HET FN4466-S Chr7 7639276 T-A 0 0 Single Base Substitution 0 INTRON HET FN4466-S Chr7 9317960 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr7 9561138 Chr5 12027106 0 Translocation 0 HET LOC_Os05g16790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4466-S Chr8 11181878 11181879 0 0 Deletion 1 HOMO LOC_Os08g18730 retrotransposon protein, putative, unclassified, expressed FN4466-S Chr8 11599518 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g19400 retrotransposon protein, putative, unclassified, expressed FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22020 retrotransposon, putative, centromere-specific, expressed FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22054 retrotransposon protein, putative, unclassified, expressed FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22080 retrotransposon, putative, centromere-specific FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22130 retrotransposon, putative, centromere-specific, expressed FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22149 CBS domain containing membrane protein, putative, expressed FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22170 expressed protein FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22190 expressed protein FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22200 expressed protein FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22210 retrotransposon protein, putative, unclassified FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22250 expressed protein FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22270 retrotransposon protein, putative, Ty3-gypsy subclass FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22284 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22300 retrotransposon, putative, centromere-specific FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22310 retrotransposon protein, putative, unclassified, expressed FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22320 retrotransposon protein, putative, unclassified, expressed FN4466-S Chr8 13292001 13462000 0 0 Deletion 170000 HET LOC_Os08g22330 retrotransposon protein, putative, unclassified, expressed FN4466-S Chr8 13399250 13399250 0 0 Insertion 2 HET FN4466-S Chr8 13583682 13583685 0 0 Deletion 3 HOMO FN4466-S Chr8 14837365 14837365 0 0 Insertion 1 HET FN4466-S Chr8 14952447 14952448 0 0 Deletion 1 HOMO FN4466-S Chr8 16650401 16650412 0 0 Deletion 11 HOMO FN4466-S Chr8 26591842 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr8 5782034 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4466-S Chr9 13846489 13846489 0 0 Insertion 2 HET FN4466-S Chr9 17452420 17452420 0 0 Insertion 1 HOMO FN4466-S Chr9 17923005 Chr3 30851529 0 Translocation 0 HET LOC_Os09g29470 AGAP005770-PA, putative, expressed FN4466-S Chr9 17923171 Chr3 30851494 0 Translocation 0 HET FN4466-S Chr9 6687649 6687650 0 0 Deletion 1 HOMO FN4466-S Chr9 8743942 8743942 0 0 Insertion 1 HOMO LOC_Os09g14720 retrotransposon protein, putative, unclassified, expressed