FN4473-S Chr1 10565808 10566073 0 0 Inversion 266 HET FN4473-S Chr1 14407856 14407856 0 0 Insertion 1 HOMO FN4473-S Chr1 16013438 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4473-S Chr1 16854899 16854899 0 0 Insertion 1 HET FN4473-S Chr1 34045284 T-C 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN4473-S Chr1 34045287 T-C 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN4473-S Chr10 11210741 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4473-S Chr10 12758380 12758382 0 0 Deletion 2 HOMO LOC_Os10g24810 cytidylyltransferase domain containing protein, expressed FN4473-S Chr10 16399913 16399914 0 0 Deletion 1 HOMO FN4473-S Chr10 9877701 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4473-S Chr11 1514375 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4473-S Chr11 15226477 15226477 0 0 Insertion 1 HET FN4473-S Chr11 23840367 Chr5 25344899 0 Translocation 0 HET LOC_Os05g40650 ATCHX, putative, expressed FN4473-S Chr11 24056760 24056760 0 0 Insertion 1 HET FN4473-S Chr11 26602329 26602330 0 0 Deletion 1 HOMO FN4473-S Chr11 292928 A-G 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN4473-S Chr12 10359513 10359557 0 0 Deletion 44 HOMO FN4473-S Chr12 17295133 17295134 0 0 Deletion 1 HOMO FN4473-S Chr12 18801524 18801524 0 0 Insertion 5 HET FN4473-S Chr12 22782292 22782294 0 0 Deletion 2 HOMO FN4473-S Chr12 2675052 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4473-S Chr12 27207326 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4473-S Chr12 9710876 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4473-S Chr2 10352234 A-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN4473-S Chr2 11633679 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4473-S Chr2 15903581 15903587 0 0 Deletion 6 HOMO LOC_Os02g27050 transposon protein, putative, CACTA, En/Spm sub-class FN4473-S Chr2 1929350 1929352 0 0 Deletion 2 HOMO FN4473-S Chr2 30277452 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN4473-S Chr2 31335363 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4473-S Chr2 31558675 31558675 0 0 Insertion 1 HOMO FN4473-S Chr2 32674196 32674197 0 0 Deletion 1 HOMO FN4473-S Chr2 411969 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4473-S Chr3 19150121 19150122 0 0 Deletion 1 HOMO FN4473-S Chr3 35763067 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4473-S Chr4 10383840 10383840 0 0 Insertion 1 HET FN4473-S Chr4 10575288 10575288 0 0 Insertion 2 HET FN4473-S Chr4 13744416 13744416 0 0 Insertion 1 HET LOC_Os04g24060 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4473-S Chr4 19950274 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4473-S Chr4 2226053 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN4473-S Chr4 24073554 24073566 0 0 Deletion 12 HOMO LOC_Os04g40530 methyltransferase domain containing protein, expressed FN4473-S Chr4 28278665 28278880 0 0 Deletion 215 HOMO LOC_Os04g47650 expressed protein FN4473-S Chr4 3399926 3399926 0 0 Insertion 2 HET FN4473-S Chr4 5089470 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4473-S Chr4 5548338 5548339 0 0 Deletion 1 HOMO LOC_Os04g10270 retrotransposon protein, putative, unclassified, expressed FN4473-S Chr4 7412627 7412627 0 0 Insertion 1 HET FN4473-S Chr5 10649631 10649632 0 0 Deletion 1 HOMO FN4473-S Chr5 11999 11999 0 0 Insertion 1 HET FN4473-S Chr6 11115105 11115105 0 0 Insertion 1 HET FN4473-S Chr6 14460049 Chr4 8661634 0 Translocation 0 HET LOC_Os04g25070 retrotransposon protein, putative, unclassified FN4473-S Chr6 18844682 18844682 0 0 Insertion 1 HET FN4473-S Chr6 23092625 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4473-S Chr6 2684771 2684772 0 0 Deletion 1 HOMO FN4473-S Chr6 7696237 7696237 0 0 Insertion 2 HET FN4473-S Chr6 8327275 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4473-S Chr7 11811605 C-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4473-S Chr7 13610203 13610204 0 0 Deletion 1 HOMO FN4473-S Chr7 13612458 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g24020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4473-S Chr7 13903213 13903215 0 0 Deletion 2 HOMO FN4473-S Chr7 17037778 17037778 0 0 Insertion 56 HET LOC_Os07g29060 expressed protein FN4473-S Chr7 21267142 21267142 0 0 Insertion 1 HET FN4473-S Chr7 2295095 2295095 0 0 Insertion 1 HET FN4473-S Chr7 26878408 26878409 0 0 Deletion 1 HOMO FN4473-S Chr7 27542879 27542890 0 0 Deletion 11 HOMO FN4473-S Chr7 28421546 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4473-S Chr7 4193706 T-C 0 0 Single Base Substitution 0 INTRON HET FN4473-S Chr7 7389114 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4473-S Chr8 11490476 11490476 0 0 Insertion 1 HET FN4473-S Chr8 25030729 25030730 0 0 Deletion 1 HOMO FN4473-S Chr8 8605728 8605728 0 0 Insertion 21 HET FN4473-S Chr9 16310545 Chr8 15578687 0 Translocation 0 HET FN4473-S Chr9 22393069 22393070 0 0 Deletion 1 HOMO FN4473-S Chr9 3071183 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13770 retrotransposon protein, putative, unclassified, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13780 retrotransposon protein, putative, unclassified, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13790 retrotransposon protein, putative, Ty1-copia subclass, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13800 retrotransposon protein, putative, Ty1-copia subclass, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13810 expressed protein FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13820 pollen signalling protein with adenylyl cyclase activity, putative, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13830 expressed protein FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13850 retrotransposon protein, putative, unclassified, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13860 retrotransposon protein, putative, unclassified FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13870 lipid phosphatase protein, putative, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13880 SWIM zinc finger family protein, putative, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13890 calmodulin binding protein, putative, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13900 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13910 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13920 expressed protein FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13930 LTPL4 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13940 AP2 domain containing protein, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13970 retrotransposon protein, putative, Ty3-gypsy subclass FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g13990 retrotransposon protein, putative, unclassified FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g14000 retrotransposon protein, putative, unclassified FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g14010 disease resistance protein RPS2, putative, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g14019 expressed protein FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g14040 transposon protein, putative, unclassified, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g14050 expressed protein FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g14060 disease resistance protein RPS2, putative, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g14070 retrotransposon protein, putative, Ty1-copia subclass FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g14080 retrotransposon protein, putative, unclassified, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g14090 retrotransposon protein, putative, unclassified FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g14100 disease resistance protein RPS2, putative, expressed FN4473-S Chr9 8065001 8357000 0 0 Deletion 292000 HET LOC_Os09g14110 retrotransposon protein, putative, unclassified, expressed FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14110 retrotransposon protein, putative, unclassified, expressed FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14120 retrotransposon protein, putative, unclassified, expressed FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14130 hypothetical protein FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14140 retrotransposon protein, putative, unclassified, expressed FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14150 retrotransposon protein, putative, LINE subclass FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14160 transposon protein, putative, Mutator sub-class, expressed FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14170 expressed protein FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14180 retrotransposon protein, putative, unclassified, expressed FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14190 retrotransposon protein, putative, unclassified FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14200 retrotransposon protein, putative, unclassified, expressed FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14210 retrotransposon protein, putative, unclassified, expressed FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14220 retrotransposon protein, putative, unclassified, expressed FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14230 retrotransposon protein, putative, unclassified FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14240 expressed protein FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14250 transposon protein, putative, Pong sub-class, expressed FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14300 retrotransposon protein, putative, unclassified FN4473-S Chr9 8360001 8454000 0 0 Deletion 94000 HET LOC_Os09g14310 retrotransposon protein, putative, Ty3-gypsy subclass FN4473-S Chr9 8471379 8471466 0 0 Deletion 87 HOMO LOC_Os09g14340 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4473-S Chr9 8475217 8475217 0 0 Insertion 1 HET FN4473-S Chr9 8578001 8602000 0 0 Deletion 24000 HET LOC_Os09g14510 peroxin-3 family protein, putative, expressed FN4473-S Chr9 8578001 8602000 0 0 Deletion 24000 HET LOC_Os09g14520 integral membrane protein, putative, expressed FN4473-S Chr9 8578001 8602000 0 0 Deletion 24000 HET LOC_Os09g14530 hAT dimerisation domain-containing protein, putative