FN4478-S Chr1 15728310 15728352 0 0 Deletion 42 HOMO FN4478-S Chr1 17671004 17671005 0 0 Deletion 1 HOMO LOC_Os01g32250 retrotransposon protein, putative, unclassified, expressed FN4478-S Chr1 34257260 34257263 0 0 Deletion 3 HOMO FN4478-S Chr1 36342653 36342653 0 0 Insertion 1 HET FN4478-S Chr1 41335477 41335478 0 0 Deletion 1 HOMO FN4478-S Chr1 9743965 9743971 0 0 Deletion 6 HOMO LOC_Os01g17010 phospholipid-transporting ATPase, putative, expressed FN4478-S Chr10 13401317 C-A 0 0 Single Base Substitution 0 INTRON HET FN4478-S Chr10 13865416 13865418 0 0 Deletion 2 HOMO FN4478-S Chr10 14381531 14381545 0 0 Deletion 14 HOMO LOC_Os10g27260 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4478-S Chr10 15817455 A-T 0 0 Single Base Substitution 0 INTRON HET FN4478-S Chr10 2462235 2462256 0 0 Deletion 21 HOMO FN4478-S Chr10 7704256 Chr8 18415246 0 Translocation 0 HET FN4478-S Chr10 7908313 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4478-S Chr10 9066800 Chr3 13497193 0 Translocation 0 HET LOC_Os03g16430 RNA polymerase sigma factor, putative, expressed FN4478-S Chr10 9169163 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4478-S Chr11 18382735 18382735 0 0 Insertion 2 HET FN4478-S Chr11 27498163 Chr7 25204012 0 Translocation 0 HET FN4478-S Chr11 28734953 28735034 0 0 Deletion 81 HOMO FN4478-S Chr12 12567658 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4478-S Chr12 15195711 15195781 0 0 Deletion 70 HOMO FN4478-S Chr12 15794524 15794526 0 0 Deletion 2 HOMO FN4478-S Chr12 1672006 1672010 0 0 Deletion 4 HOMO FN4478-S Chr12 16861037 16861038 0 0 Deletion 1 HOMO FN4478-S Chr12 20875140 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4478-S Chr12 20895839 20895841 0 0 Deletion 2 HOMO FN4478-S Chr12 21739452 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g35720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4478-S Chr12 23487966 23487966 0 0 Insertion 10 HET FN4478-S Chr12 422709 422723 0 0 Deletion 14 HOMO LOC_Os12g01710 expressed protein FN4478-S Chr12 5307125 5307126 0 0 Deletion 1 HOMO FN4478-S Chr12 9137400 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4478-S Chr2 13046400 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4478-S Chr2 17066123 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4478-S Chr2 17066127 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4478-S Chr2 28414957 28414957 0 0 Insertion 2 HET FN4478-S Chr2 3710190 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4478-S Chr2 8412118 8412118 0 0 Insertion 2 HET FN4478-S Chr3 1106286 1106294 0 0 Deletion 8 HOMO FN4478-S Chr3 12448369 12448369 0 0 Insertion 1 HOMO LOC_Os03g21790 cupin domain containing protein, expressed FN4478-S Chr3 15519273 15519275 0 0 Deletion 2 HOMO FN4478-S Chr3 15839722 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4478-S Chr3 17097648 17097652 0 0 Deletion 4 HOMO FN4478-S Chr3 19490145 19490346 0 0 Inversion 202 HET FN4478-S Chr3 20131623 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os03g36290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4478-S Chr3 24374368 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g43610 retrotransposon protein, putative, Ty1-copia subclass, expressed FN4478-S Chr3 26124347 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4478-S Chr3 2835577 2835600 0 0 Deletion 23 HOMO FN4478-S Chr3 31421927 31722344 0 0 Inversion 300418 HOMO FN4478-S Chr3 31421931 31722342 0 0 Inversion 300412 HOMO FN4478-S Chr3 6506541 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4478-S Chr3 9762216 9762381 0 0 Inversion 166 HET FN4478-S Chr4 35056978 35056994 0 0 Deletion 16 HOMO FN4478-S Chr5 1643881 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g03740 transcription factor TF2, putative, expressed FN4478-S Chr5 26144223 26144231 0 0 Deletion 8 HOMO LOC_Os05g44970 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN4478-S Chr5 26387280 26387286 0 0 Deletion 6 HOMO FN4478-S Chr5 2690615 2690619 0 0 Deletion 4 HOMO LOC_Os05g05420 retrotransposon protein, putative, Ty3-gypsy subclass FN4478-S Chr5 29411022 29411023 0 0 Deletion 1 HOMO FN4478-S Chr5 8664270 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4478-S Chr6 12493558 12493571 0 0 Deletion 13 HOMO FN4478-S Chr6 16849707 16849820 0 0 Inversion 114 HET FN4478-S Chr6 19913104 19913106 0 0 Deletion 2 HOMO FN4478-S Chr6 22062501 22062564 0 0 Deletion 63 HOMO FN4478-S Chr6 22862747 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4478-S Chr6 29411149 29940887 0 0 Inversion 529739 HET FN4478-S Chr6 29411208 29940897 0 0 Inversion 529690 HET LOC_Os06g48610 CCT motif family protein, expressed FN4478-S Chr6 3117463 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4478-S Chr6 7668658 7668773 0 0 Inversion 116 HET FN4478-S Chr6 8860496 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g15640 retrotransposon protein, putative, unclassified, expressed FN4478-S Chr7 11116990 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4478-S Chr7 12473205 12473205 0 0 Insertion 1 HET FN4478-S Chr7 14284216 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4478-S Chr7 23995263 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4478-S Chr7 24982855 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4478-S Chr7 3362415 3362595 0 0 Inversion 181 HET FN4478-S Chr7 7511671 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4478-S Chr8 10226024 10226029 0 0 Deletion 5 HOMO FN4478-S Chr8 10561132 10561148 0 0 Deletion 16 HOMO FN4478-S Chr8 12651492 12651496 0 0 Deletion 4 HOMO FN4478-S Chr8 13884079 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4478-S Chr8 15622051 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g25670 expressed protein FN4478-S Chr8 15685031 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4478-S Chr8 23297357 23297358 0 0 Deletion 1 HOMO FN4478-S Chr8 23489010 23489010 0 0 Insertion 3 HET FN4478-S Chr8 27269640 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN4478-S Chr8 3541689 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4478-S Chr8 5662476 5662487 0 0 Deletion 11 HOMO FN4478-S Chr8 8322114 8322115 0 0 Deletion 1 HOMO FN4478-S Chr9 10979099 10979111 0 0 Deletion 12 HOMO FN4478-S Chr9 11391953 A-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4478-S Chr9 12405741 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4478-S Chr9 13274031 C-T 0 0 Single Base Substitution 0 INTRON HET FN4478-S Chr9 14776349 15584871 0 0 Inversion 808523 HET LOC_Os09g24800 MYB family transcription factor, putative, expressed FN4478-S Chr9 14776359 15584871 0 0 Inversion 808513 HET LOC_Os09g24800 MYB family transcription factor, putative, expressed FN4478-S Chr9 16126355 16126356 0 0 Deletion 1 HOMO FN4478-S Chr9 1631142 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os09g03360 retrotransposon protein, putative, unclassified, expressed FN4478-S Chr9 21274108 C-G 0 0 Single Base Substitution 0 INTRON HET FN4478-S Chr9 3483140 3483851 0 0 Inversion 712 HET LOC_Os09g07130 retrotransposon protein, putative, unclassified, expressed FN4478-S Chr9 4349164 4349165 0 0 Deletion 1 HOMO