FN4494-S Chr1 128202 128204 0 0 Deletion 2 HOMO FN4494-S Chr1 16331620 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr1 17239993 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr1 17332167 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g31660 retrotransposon protein, putative, unclassified, expressed FN4494-S Chr1 21713248 21713249 0 0 Deletion 1 HOMO FN4494-S Chr1 34927905 34927906 0 0 Deletion 1 HOMO FN4494-S Chr1 35551953 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr1 39814402 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g68510 peptide transporter PTR2, putative, expressed FN4494-S Chr1 5344132 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4494-S Chr1 762500 762500 0 0 Insertion 57 HET FN4494-S Chr1 936306 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g02730 TAK14, putative, expressed FN4494-S Chr10 10270504 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr10 11546284 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr10 12530143 G-A 0 0 Single Base Substitution 0 INTRON HET FN4494-S Chr10 4437033 4437033 0 0 Insertion 6 HET FN4494-S Chr10 6318405 6318406 0 0 Deletion 1 HOMO FN4494-S Chr10 7142970 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr10 8111405 Chr9 19170309 0 Translocation 0 HET FN4494-S Chr11 13993416 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr11 16925564 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4494-S Chr11 19416594 19416598 0 0 Deletion 4 HOMO FN4494-S Chr11 2240856 2240858 0 0 Deletion 2 HOMO LOC_Os11g05110 pyruvate kinase, putative, expressed FN4494-S Chr11 23497668 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr11 3020685 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN4494-S Chr11 4462760 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4494-S Chr11 7230591 7230591 0 0 Insertion 1 HET FN4494-S Chr12 14010947 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr12 14010949 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr12 14813678 14813705 0 0 Deletion 27 HOMO FN4494-S Chr12 15212693 15212697 0 0 Deletion 4 HOMO FN4494-S Chr12 16471312 16471313 0 0 Deletion 1 HOMO FN4494-S Chr12 16944042 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g28670 retrotransposon protein, putative, unclassified FN4494-S Chr12 16989198 C-T 0 0 Single Base Substitution 0 INTRON HET FN4494-S Chr12 25446228 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN4494-S Chr12 26967991 26967991 0 0 Insertion 2 HET FN4494-S Chr12 4407609 4407610 0 0 Deletion 1 HOMO FN4494-S Chr12 8358042 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g14630 retrotransposon protein, putative, LINE subclass, expressed FN4494-S Chr12 8358113 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g14630 retrotransposon protein, putative, LINE subclass, expressed FN4494-S Chr12 9253128 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr2 20071226 20071317 0 0 Deletion 91 HOMO FN4494-S Chr2 20945880 A-T 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HOMO FN4494-S Chr2 21650670 21650670 0 0 Insertion 73 HET FN4494-S Chr2 28748696 28748696 0 0 Insertion 1 HET FN4494-S Chr2 3863987 3863987 0 0 Insertion 1 HET FN4494-S Chr3 11279349 11279349 0 0 Insertion 8 HET FN4494-S Chr3 13505158 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr3 13796672 G-T 0 0 Single Base Substitution 0 INTRON HET FN4494-S Chr3 1398269 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g03260 homeobox domain containing protein, expressed FN4494-S Chr3 2330221 A-G 0 0 Single Base Substitution 0 INTRON HET FN4494-S Chr3 2475835 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr3 25338358 G-T 0 0 Single Base Substitution 0 INTRON HET FN4494-S Chr3 26793522 26793536 0 0 Deletion 14 HOMO FN4494-S Chr3 28918139 28918141 0 0 Deletion 2 HOMO FN4494-S Chr3 8360325 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr3 8378057 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g15310 transposon protein, putative, unclassified FN4494-S Chr4 10448697 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4494-S Chr4 13068776 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN4494-S Chr4 15036164 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g25870 OsMADS84 - MADS-box family gene with M-gamma type-box, expressed FN4494-S Chr4 15266474 15266486 0 0 Deletion 12 HOMO FN4494-S Chr4 1882267 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr4 21031056 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr4 23086445 23086445 0 0 Insertion 1 HOMO FN4494-S Chr4 25891275 25891277 0 0 Deletion 2 HOMO FN4494-S Chr4 27703127 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4494-S Chr4 29093416 29093439 0 0 Deletion 23 HOMO FN4494-S Chr4 5136380 5136381 0 0 Deletion 1 HOMO FN4494-S Chr4 8649572 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4494-S Chr5 12875203 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4494-S Chr5 13972461 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN4494-S Chr5 17822065 17822188 0 0 Inversion 124 HET FN4494-S Chr5 21326587 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g36010 OsSub47 - Putative Subtilisin homologue, expressed FN4494-S Chr5 29004962 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g50600 OsSCP31 - Putative Serine Carboxypeptidase homologue, expressed FN4494-S Chr5 6309263 6309264 0 0 Deletion 1 HOMO FN4494-S Chr5 7663366 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4494-S Chr5 8993028 8993048 0 0 Deletion 20 HOMO FN4494-S Chr5 9239800 9239807 0 0 Deletion 7 HOMO FN4494-S Chr6 10283412 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr6 11365564 11365565 0 0 Deletion 1 HOMO FN4494-S Chr6 12727849 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr6 21870113 Chr1 21652226 0 Translocation 0 HET LOC_Os01g38930 retrotransposon, putative, centromere-specific FN4494-S Chr6 21870113 Chr1 21652226 0 Translocation 0 HET LOC_Os06g37050 transposon protein, putative, unclassified, expressed FN4494-S Chr6 970501 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN4494-S Chr7 10768960 10768963 0 0 Deletion 3 HOMO FN4494-S Chr7 13609459 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr7 18140221 18140287 0 0 Deletion 66 HOMO FN4494-S Chr7 23661243 23661243 0 0 Insertion 4 HET FN4494-S Chr7 29086688 29086689 0 0 Deletion 1 HOMO FN4494-S Chr7 29452473 G-T 0 0 Single Base Substitution 0 INTRON HET FN4494-S Chr7 4224279 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4494-S Chr7 4280190 4280190 0 0 Insertion 1 HET FN4494-S Chr7 7648947 7648954 0 0 Deletion 7 HOMO LOC_Os07g13340 retrotransposon protein, putative, unclassified, expressed FN4494-S Chr8 13237109 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4494-S Chr8 1854683 1854688 0 0 Deletion 5 HOMO FN4494-S Chr8 21150618 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr8 22485744 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr8 7222340 7222341 0 0 Deletion 1 HOMO FN4494-S Chr8 9925883 9925954 0 0 Deletion 71 HOMO FN4494-S Chr9 1598324 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g03300 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4494-S Chr9 16216288 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4494-S Chr9 18207684 18207685 0 0 Deletion 1 HOMO FN4494-S Chr9 21172505 21172506 0 0 Deletion 1 HOMO FN4494-S Chr9 7805010 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g13480 transposon protein, putative, CACTA, En/Spm sub-class, expressed