FN4558-S Chr1 11227953 A-C 0 0 Single Base Substitution 0 HOMO FN4558-S Chr1 15748161 15748162 0 0 Deletion 2 HET FN4558-S Chr1 24730001 24738000 0 0 Deletion 8000 HOMO FN4558-S Chr1 27827545 C-T 0 0 Single Base Substitution 0 HOMO FN4558-S Chr1 36829472 36829472 0 0 Insertion 84 HET FN4558-S Chr1 38858773 38858773 0 0 Insertion 1 HET FN4558-S Chr10 10040001 10139000 0 0 Deletion 99000 HOMO LOC_Os10g20020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4558-S Chr10 10040001 10139000 0 0 Deletion 99000 HOMO LOC_Os10g20030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4558-S Chr10 10040001 10139000 0 0 Deletion 99000 HOMO LOC_Os10g20040 retrotransposon protein, putative, unclassified, expressed FN4558-S Chr10 10040001 10139000 0 0 Deletion 99000 HOMO LOC_Os10g20050 retrotransposon protein, putative, unclassified FN4558-S Chr10 10040001 10139000 0 0 Deletion 99000 HOMO LOC_Os10g20060 expressed protein FN4558-S Chr10 10040001 10139000 0 0 Deletion 99000 HOMO LOC_Os10g20070 transposon protein, putative, unclassified, expressed FN4558-S Chr10 10040001 10139000 0 0 Deletion 99000 HOMO LOC_Os10g20080 expressed protein FN4558-S Chr10 10040001 10139000 0 0 Deletion 99000 HOMO LOC_Os10g20090 CSLH1 - cellulose synthase-like family H, expressed FN4558-S Chr10 10040001 10139000 0 0 Deletion 99000 HOMO LOC_Os10g20120 serine/threonine-protein kinase receptor precursor, putative, expressed FN4558-S Chr10 10040001 10139000 0 0 Deletion 99000 HOMO LOC_Os10g20139 expressed protein FN4558-S Chr10 10040001 10139000 0 0 Deletion 99000 HOMO LOC_Os10g20160 serine/threonine-protein kinase receptor precursor, putative, expressed FN4558-S Chr10 10040001 10139000 0 0 Deletion 99000 HOMO LOC_Os10g20170 retrotransposon protein, putative, unclassified, expressed FN4558-S Chr10 10040001 10139000 0 0 Deletion 99000 HOMO LOC_Os10g20180 retrotransposon protein, putative, unclassified, expressed FN4558-S Chr10 10040001 10139000 0 0 Deletion 99000 HOMO LOC_Os10g20190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4558-S Chr10 10140001 10189000 0 0 Deletion 49000 HOMO LOC_Os10g20190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4558-S Chr10 10140001 10189000 0 0 Deletion 49000 HOMO LOC_Os10g20200 retrotransposon protein, putative, unclassified FN4558-S Chr10 10140001 10189000 0 0 Deletion 49000 HOMO LOC_Os10g20210 retrotransposon protein, putative, unclassified FN4558-S Chr10 10140001 10189000 0 0 Deletion 49000 HOMO LOC_Os10g20220 retrotransposon protein, putative, unclassified, expressed FN4558-S Chr10 10140001 10189000 0 0 Deletion 49000 HOMO LOC_Os10g20230 expressed protein FN4558-S Chr10 10140001 10189000 0 0 Deletion 49000 HOMO LOC_Os10g20235 expressed protein FN4558-S Chr10 10140001 10189000 0 0 Deletion 49000 HOMO LOC_Os10g20240 syntaxin 6, N-terminal domain containing protein, expressed FN4558-S Chr10 10140001 10189000 0 0 Deletion 49000 HOMO LOC_Os10g20250 membrane associated DUF588 domain containing protein, putative, expressed FN4558-S Chr10 10140001 10189000 0 0 Deletion 49000 HOMO LOC_Os10g20260 CSLF7 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN4558-S Chr10 10141750 10141752 0 0 Deletion 3 HET LOC_Os10g20190 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4558-S Chr10 10203001 10222000 0 0 Deletion 19000 HOMO LOC_Os10g20290 expressed protein FN4558-S Chr10 10203001 10222000 0 0 Deletion 19000 HOMO LOC_Os10g20300 expressed protein FN4558-S Chr10 10203001 10222000 0 0 Deletion 19000 HOMO LOC_Os10g20310 thioredoxin fold, putative, expressed FN4558-S Chr10 15275069 15275073 0 0 Deletion 5 HET LOC_Os10g29400 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4558-S Chr10 3169143 Chr8 16573930 Translocation 0 HET FN4558-S Chr10 4012148 4012148 0 0 Insertion 13 HET FN4558-S Chr10 4295681 Chr7 12835042 Translocation 0 HET LOC_Os07g22740 retrotransposon, putative, centromere-specific, expressed FN4558-S Chr10 4295685 Chr7 12836552 Translocation 0 HET LOC_Os07g22740 retrotransposon, putative, centromere-specific, expressed FN4558-S Chr10 5220373 5220373 0 0 Insertion 84 HET FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g18880 expressed protein FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g18890 HNH endonuclease domain-containing protein, putative, expressed FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g18910 hypothetical protein FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g18920 expressed protein FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g18930 retrotransposon, putative, centromere-specific FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g18940 retrotransposon, putative, centromere-specific, expressed FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g18960 retrotransposon, putative, centromere-specific, expressed FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g18970 retrotransposon protein, putative, unclassified FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g18980 retrotransposon, putative, centromere-specific FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g18990 receptor kinase 2, putative, expressed FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g19000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g19010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g19020 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g19030 expressed protein FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g19040 expressed protein FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g19050 expressed protein FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g19064 retrotransposon protein, putative, Ty1-copia subclass FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g19080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g19090 retrotransposon, putative, centromere-specific FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g19100 expressed protein FN4558-S Chr10 9620001 9732000 0 0 Deletion 112000 HOMO LOC_Os10g19110 cytochrome P450, putative, expressed FN4558-S Chr11 11466326 C-T 0 0 Single Base Substitution 0 HOMO FN4558-S Chr11 19069264 19069265 0 0 Deletion 2 HET FN4558-S Chr11 19874001 19949000 0 0 Deletion 75000 HET LOC_Os11g34010 hypothetical protein FN4558-S Chr11 19874001 19949000 0 0 Deletion 75000 HET LOC_Os11g34020 protein binding protein, putative, expressed FN4558-S Chr11 19874001 19949000 0 0 Deletion 75000 HET LOC_Os11g34040 hypothetical protein FN4558-S Chr11 19874001 19949000 0 0 Deletion 75000 HET LOC_Os11g34050 retrotransposon, putative, centromere-specific, expressed FN4558-S Chr11 19874001 19949000 0 0 Deletion 75000 HET LOC_Os11g34060 retrotransposon, putative, centromere-specific, expressed FN4558-S Chr11 19874001 19949000 0 0 Deletion 75000 HET LOC_Os11g34070 hypothetical protein FN4558-S Chr11 19874001 19949000 0 0 Deletion 75000 HET LOC_Os11g34080 expressed protein FN4558-S Chr11 24809042 24809049 0 0 Deletion 8 HOMO FN4558-S Chr11 26769001 26798000 0 0 Deletion 29000 HET LOC_Os11g44300 expressed protein FN4558-S Chr11 26769001 26798000 0 0 Deletion 29000 HET LOC_Os11g44310 calmodulin binding protein, putative, expressed FN4558-S Chr11 26769001 26798000 0 0 Deletion 29000 HET LOC_Os11g44330 expressed protein FN4558-S Chr11 26769001 26798000 0 0 Deletion 29000 HET LOC_Os11g44340 calmodulin binding protein, putative, expressed FN4558-S Chr11 26769352 26963126 0 0 Inversion 193774 HET FN4558-S Chr11 26797846 Chr7 8679376 Translocation 0 HET LOC_Os11g44340 calmodulin binding protein, putative, expressed FN4558-S Chr11 26798150 Chr7 8679375 Translocation 0 HET FN4558-S Chr11 26798162 26975002 0 0 Inversion 176840 HET LOC_Os11g44600 calmodulin binding protein, putative, expressed FN4558-S Chr11 26963001 26975000 0 0 Deletion 12000 HET LOC_Os11g44590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4558-S Chr11 26963001 26975000 0 0 Deletion 12000 HET LOC_Os11g44600 calmodulin binding protein, putative, expressed FN4558-S Chr12 10799797 10799801 0 0 Deletion 5 HET LOC_Os12g18690 expressed protein FN4558-S Chr12 21483587 21483587 0 0 Insertion 19 HET FN4558-S Chr12 25209283 C-T 0 0 Single Base Substitution 0 HOMO FN4558-S Chr12 3202161 3202164 0 0 Deletion 4 HET FN4558-S Chr12 4118059 4118059 0 0 Deletion 1 HET FN4558-S Chr12 4867976 4867984 0 0 Deletion 9 HET FN4558-S Chr12 6574801 6574814 0 0 Deletion 14 HET FN4558-S Chr2 10615637 C-T 0 0 Single Base Substitution 0 HET FN4558-S Chr2 10615638 T-A 0 0 Single Base Substitution 0 HET FN4558-S Chr2 11857001 11897000 0 0 Deletion 40000 HET LOC_Os02g20120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4558-S Chr2 11857001 11897000 0 0 Deletion 40000 HET LOC_Os02g20130 DEFL72 - Defensin and Defensin-like DEFL family FN4558-S Chr2 11857001 11897000 0 0 Deletion 40000 HET LOC_Os02g20140 protein kinase domain containing protein, expressed FN4558-S Chr2 11857001 11897000 0 0 Deletion 40000 HET LOC_Os02g20150 expressed protein FN4558-S Chr2 11857001 11897000 0 0 Deletion 40000 HET LOC_Os02g20160 PPR repeat domain containing protein, putative, expressed FN4558-S Chr2 11857001 11897000 0 0 Deletion 40000 HET LOC_Os02g20170 drought induced 19 protein, putative, expressed FN4558-S Chr2 11857001 11897000 0 0 Deletion 40000 HET LOC_Os02g20180 hypothetical protein FN4558-S Chr2 11857001 11897000 0 0 Deletion 40000 HET LOC_Os02g20190 Leucine Rich Repeat family protein, expressed FN4558-S Chr2 11931001 11943000 0 0 Deletion 12000 HET LOC_Os02g20270 expressed protein FN4558-S Chr2 11931805 11931805 0 0 Deletion 1 HET FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20350 retrotransposon protein, putative, unclassified, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20360 tyrosine aminotransferase, putative, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20370 expressed protein FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20380 expressed protein FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20394 dnaJ domain containing protein, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20410 GTP binding protein, putative, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20420 retrotransposon protein, putative, LINE subclass, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20430 WD domain, G-beta repeat domain containing protein, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20450 hypothetical protein FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20460 Leucine Rich Repeat family protein, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20470 retrotransposon protein, putative, unclassified, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20480 resistance protein candidate, putative, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20490 expressed protein FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20500 expressed protein FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20510 expressed protein FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20520 retrotransposon, putative, centromere-specific FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20530 expressed protein FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20540 fasciclin domain containing protein, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20550 hypothetical protein FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20560 fasciclin domain containing protein, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20570 retrotransposon protein, putative, Ty1-copia subclass, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20590 MBTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20600 BTB/POZ domain containing protein, putative, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20620 speckle-type POZ protein, putative, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20630 retrotransposon protein, putative, unclassified, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20640 retrotransposon protein, putative, unclassified, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20660 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4558-S Chr2 11987001 12182000 0 0 Deletion 195000 HET LOC_Os02g20670 retrotransposon protein, putative, unclassified FN4558-S Chr2 12691759 T-C 0 0 Single Base Substitution 0 HET FN4558-S Chr2 26860301 26860301 0 0 Deletion 1 HET FN4558-S Chr2 294985 A-T 0 0 Single Base Substitution 0 HOMO FN4558-S Chr2 30232482 30232482 0 0 Deletion 1 HET LOC_Os02g49470 tic20 protein-related, putative, expressed FN4558-S Chr2 4694642 4694652 0 0 Deletion 11 HOMO LOC_Os02g09150 inorganic H+ pyrophosphatase, putative, expressed FN4558-S Chr2 6171450 A-G 0 0 Single Base Substitution 0 HOMO FN4558-S Chr2 7620302 T-C 0 0 Single Base Substitution 0 HET LOC_Os02g13965 lectin protein kinase family protein, putative, expressed FN4558-S Chr3 1360052 1360052 0 0 Deletion 1 HOMO FN4558-S Chr3 21001733 G-A 0 0 Single Base Substitution 0 HET FN4558-S Chr3 25458327 25458327 0 0 Insertion 22 HET FN4558-S Chr3 26404378 26404378 0 0 Deletion 1 HOMO FN4558-S Chr3 31427239 G-A 0 0 Single Base Substitution 0 HOMO FN4558-S Chr3 8641568 8641569 0 0 Deletion 2 HOMO FN4558-S Chr4 10246780 G-A 0 0 Single Base Substitution 0 HET FN4558-S Chr4 17149327 17149327 0 0 Deletion 1 HET FN4558-S Chr4 1787471 C-T 0 0 Single Base Substitution 0 HET FN4558-S Chr4 26783425 26783425 0 0 Insertion 1 HET FN4558-S Chr4 29551232 29551347 0 0 Deletion 116 HET FN4558-S Chr4 34987520 34987520 0 0 Deletion 1 HET FN4558-S Chr4 3560657 G-A 0 0 Single Base Substitution 0 HET LOC_Os04g06770 argonaute, putative, expressed FN4558-S Chr4 7049042 G-C 0 0 Single Base Substitution 0 HET FN4558-S Chr4 8294328 C-T 0 0 Single Base Substitution 0 HET LOC_Os04g14780 retrotransposon protein, putative, unclassified, expressed FN4558-S Chr4 8643646 8643646 0 0 Insertion 4 HET FN4558-S Chr4 9537826 C-T 0 0 Single Base Substitution 0 HET FN4558-S Chr4 9608539 G-A 0 0 Single Base Substitution 0 HET FN4558-S Chr4 9756003 G-A 0 0 Single Base Substitution 0 HET FN4558-S Chr5 1145446 T-G 0 0 Single Base Substitution 0 HET FN4558-S Chr5 12452205 12452205 0 0 Insertion 1 HET FN4558-S Chr5 15078765 15078784 0 0 Deletion 20 HOMO FN4558-S Chr5 15367859 15367859 0 0 Deletion 1 HET FN4558-S Chr5 15684439 15684477 0 0 Deletion 39 HOMO FN4558-S Chr5 21625822 A-T 0 0 Single Base Substitution 0 HET FN4558-S Chr5 21625823 C-T 0 0 Single Base Substitution 0 HET FN4558-S Chr5 21629275 G-A 0 0 Single Base Substitution 0 HET FN4558-S Chr5 21629281 G-C 0 0 Single Base Substitution 0 HET FN4558-S Chr5 26338450 26338450 0 0 Deletion 1 HOMO FN4558-S Chr5 9303474 C-A 0 0 Single Base Substitution 0 HOMO FN4558-S Chr5 9541719 9541725 0 0 Deletion 7 HOMO FN4558-S Chr6 11647912 11647912 0 0 Deletion 1 HET FN4558-S Chr6 12463161 12463161 0 0 Deletion 1 HET FN4558-S Chr6 22246308 22246308 0 0 Deletion 1 HET FN4558-S Chr6 2325266 2325285 0 0 Deletion 20 HET FN4558-S Chr6 26520522 26520522 0 0 Insertion 1 HET FN4558-S Chr6 28021616 28021617 0 0 Deletion 2 HET FN4558-S Chr6 6896103 6896106 0 0 Deletion 4 HET FN4558-S Chr7 13920366 G-A 0 0 Single Base Substitution 0 HET FN4558-S Chr7 15948286 C-T 0 0 Single Base Substitution 0 HET FN4558-S Chr7 18431868 C-T 0 0 Single Base Substitution 0 HET FN4558-S Chr7 19711438 19711438 0 0 Deletion 1 HET FN4558-S Chr7 21059325 21059340 0 0 Deletion 16 HET LOC_Os07g35170 retrotransposon protein, putative, unclassified FN4558-S Chr7 22311901 G-A 0 0 Single Base Substitution 0 HET FN4558-S Chr7 26050219 26050220 0 0 Deletion 2 HET FN4558-S Chr7 26396949 26396949 0 0 Insertion 2 HET FN4558-S Chr7 5490354 C-T 0 0 Single Base Substitution 0 HET FN4558-S Chr8 16259642 16259642 0 0 Insertion 87 HET FN4558-S Chr8 17910649 17910649 0 0 Insertion 21 HET FN4558-S Chr8 17953930 17953930 0 0 Insertion 112 HET FN4558-S Chr8 18408375 18408376 0 0 Deletion 2 HET FN4558-S Chr8 19268840 19268840 0 0 Insertion 5 HET FN4558-S Chr8 20225001 20248000 0 0 Deletion 23000 HOMO LOC_Os08g32660 expressed protein FN4558-S Chr8 20225001 20248000 0 0 Deletion 23000 HOMO LOC_Os08g32680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4558-S Chr8 2596687 C-T 0 0 Single Base Substitution 0 HOMO FN4558-S Chr8 26700653 26700654 0 0 Deletion 2 HET FN4558-S Chr8 27709305 C-T 0 0 Single Base Substitution 0 HOMO FN4558-S Chr9 19451436 19451436 0 0 Insertion 1 HOMO FN4558-S Chr9 8244079 8244079 0 0 Insertion 1 HET