FN4560-S Chr1 14125077 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g25040 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4560-S Chr1 14583727 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4560-S Chr1 22390501 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4560-S Chr1 22767073 22767075 0 0 Deletion 2 HOMO FN4560-S Chr1 26582459 26582461 0 0 Deletion 2 HOMO FN4560-S Chr1 35491259 35491259 0 0 Insertion 6 HET FN4560-S Chr10 14271920 14271920 0 0 Insertion 1 HET FN4560-S Chr10 20294995 G-C 0 0 Single Base Substitution 0 INTRON HET FN4560-S Chr10 4728911 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4560-S Chr10 6340163 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g11454 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4560-S Chr11 10291499 G-T 0 0 Single Base Substitution 0 INTRON HET FN4560-S Chr11 13507607 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4560-S Chr11 14972928 14972929 0 0 Deletion 1 HOMO FN4560-S Chr11 20039687 20039689 0 0 Deletion 2 HOMO FN4560-S Chr11 20635001 20663000 0 0 Deletion 28000 HET LOC_Os11g35200 retrotransposon protein, putative, unclassified, expressed FN4560-S Chr11 20635001 20663000 0 0 Deletion 28000 HET LOC_Os11g35210 NB-ARC domain containing protein, expressed FN4560-S Chr11 20635001 20663000 0 0 Deletion 28000 HET LOC_Os11g35220 OsWAK117 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed FN4560-S Chr11 20635001 20663000 0 0 Deletion 28000 HET LOC_Os11g35230 transposon protein, putative, unclassified FN4560-S Chr11 20635001 20663000 0 0 Deletion 28000 HET LOC_Os11g35240 transposon protein, putative, unclassified, expressed FN4560-S Chr11 22536539 C-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN4560-S Chr11 23305864 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4560-S Chr12 11539103 11539103 0 0 Insertion 1 HET FN4560-S Chr12 12735796 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g22560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4560-S Chr12 13770374 C-A 0 0 Single Base Substitution 0 INTRON HET FN4560-S Chr12 24971645 24971646 0 0 Deletion 1 HOMO FN4560-S Chr12 25083703 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4560-S Chr12 2999553 2999554 0 0 Deletion 1 HOMO FN4560-S Chr12 5511207 5511207 0 0 Insertion 8 HET FN4560-S Chr12 5579252 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4560-S Chr12 6603085 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4560-S Chr12 7850625 7850625 0 0 Insertion 12 HET FN4560-S Chr2 12254823 12254823 0 0 Insertion 2 HET FN4560-S Chr2 18680854 18680854 0 0 Insertion 1 HET LOC_Os02g31190 retrotransposon protein, putative, unclassified, expressed FN4560-S Chr2 21913119 21913119 0 0 Insertion 1 HET LOC_Os02g36290 hypothetical protein FN4560-S Chr2 34963256 35535811 0 0 Inversion 572556 HOMO LOC_Os02g58040 OsFBX75 - F-box domain containing protein, expressed FN4560-S Chr2 34963294 35535852 0 0 Inversion 572559 HOMO LOC_Os02g58040 OsFBX75 - F-box domain containing protein, expressed FN4560-S Chr3 24207819 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4560-S Chr3 25424579 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g45050 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4560-S Chr3 34655914 34655915 0 0 Deletion 1 HOMO FN4560-S Chr4 1536115 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN4560-S Chr4 26414689 26414690 0 0 Deletion 1 HOMO FN4560-S Chr4 2658320 2658320 0 0 Insertion 1 HET FN4560-S Chr4 2767186 2767186 0 0 Insertion 3 HET FN4560-S Chr4 28904022 Chr1 26271178 0 Translocation 0 HET LOC_Os04g48484 expressed protein FN4560-S Chr4 28904025 Chr1 26271292 0 Translocation 0 HET LOC_Os04g48484 expressed protein FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51760 expressed protein FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51770 expressed protein FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51780 expressed protein FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51786 containing DUF163, putative, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51792 PAP fibrillin family domain containing protein, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51794 DNA binding protein, putative, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51796 DNA repair ATPase-related, putative, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51800 MYB protein, putative, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51809 expressed protein FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51820 OsHKT1;1 - Na+ transporter, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51830 OsHKT1;4 - Na+ transporter, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51850 transposon protein, putative, CACTA, En/Spm sub-class FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51860 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51870 retrotransposon protein, putative, unclassified, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51880 GHMP kinases ATP-binding protein, putative, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51890 OsSAUR20 - Auxin-responsive SAUR gene family member, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51900 expressed protein FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51910 proteasome/cyclosome repeat containing protein, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51920 protein disulfide isomerase, putative, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51930 retrotransposon protein, putative, LINE subclass, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51940 YT521-B, putative, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51950 serine/threonine-protein kinase HT1, putative, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51960 expressed protein FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51970 synaptic vesicle 2-related protein, putative, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51980 transferase family domain containing protein, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g51990 transferase family domain containing protein, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g52000 protein phosphatase 2C, putative, expressed FN4560-S Chr4 30671001 30890000 0 0 Deletion 219000 HET LOC_Os04g52020 PHD-finger domain containing protein, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52020 PHD-finger domain containing protein, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52030 zinc finger domain, LSD1 subclass family protein, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52040 TNP1, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52050 TNP1, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52060 transposable element protein, putative, containing Pfam profile: PF03004, Transposase_24, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52074 expressed protein FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52090 AP2 domain containing protein, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52100 peptidase, M24 family protein, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52110 late embryogenesis abundant protein, group 3, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52120 potassium transporter, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52130 coproporphyrinogen III oxidase, chloroplast precursor, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52140 protein kinase domain containing protein, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52164 transferase family protein, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52180 expressed protein FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52190 vacuolar-sorting receptor precursor, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52200 RNA recognition motif containing protein, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52210 terpene synthase, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52220 expressed protein FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52230 ent-kaurene synthase, chloroplast precursor, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52240 terpene synthase, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52250 LTPL123 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52260 LTPL124 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52270 coatomer subunit epsilon, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52280 dehydrogenase, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52290 PPR repeat domain containing protein, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52300 expressed protein FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52310 metal cation transporter, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52320 QRT3, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52330 expressed protein FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52340 expressed protein FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52361 ribosomal protein S17, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52370 UTP--glucose-1-phosphate uridylyltransferase, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52380 methyl-CpG binding domain containing protein, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52390 potassium transporter, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52400 oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52410 OsMADS31 - MADS-box family gene with MIKCc type-box, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52420 expressed protein FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52440 aminotransferase, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52450 aminotransferase, putative, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52460 retrotransposon protein, putative, unclassified, expressed FN4560-S Chr4 30895001 31206000 0 0 Deletion 311000 HET LOC_Os04g52479 peptidase, trypsin-like serine and cysteine proteases, putative, expressed FN4560-S Chr4 35038835 35038842 0 0 Deletion 7 HOMO FN4560-S Chr4 35190251 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4560-S Chr4 6641555 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4560-S Chr5 10342407 10342413 0 0 Deletion 6 HOMO FN4560-S Chr5 12009050 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g20460 retrotransposon protein, putative, unclassified, expressed FN4560-S Chr5 12367664 12367664 0 0 Insertion 3 HET LOC_Os05g21020 retrotransposon protein, putative, unclassified, expressed FN4560-S Chr5 15388851 15388851 0 0 Insertion 2 HET FN4560-S Chr5 15659988 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN4560-S Chr5 21183533 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN4560-S Chr5 22966648 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g39160 expressed protein FN4560-S Chr5 24278524 24525330 0 0 Inversion 246807 HOMO FN4560-S Chr5 24278527 24525334 0 0 Inversion 246808 HOMO FN4560-S Chr5 29688059 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4560-S Chr5 4474970 4474972 0 0 Deletion 2 HOMO FN4560-S Chr5 8165201 8165201 0 0 Insertion 16 HET FN4560-S Chr5 9005281 9005286 0 0 Deletion 5 HOMO FN4560-S Chr6 11354075 11354076 0 0 Deletion 1 HOMO FN4560-S Chr6 1784702 1784702 0 0 Insertion 1 HET FN4560-S Chr6 19429695 19429706 0 0 Deletion 11 HOMO LOC_Os06g33350 plant protein of unknown function domain containing protein, expressed FN4560-S Chr6 27934696 27934701 0 0 Deletion 5 HOMO LOC_Os06g46070 hypothetical protein FN4560-S Chr6 28545278 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4560-S Chr6 8170445 8170445 0 0 Insertion 6 HET FN4560-S Chr6 850515 850515 0 0 Insertion 1 HET FN4560-S Chr6 919068 T-C 0 0 Single Base Substitution 0 INTRON HET FN4560-S Chr7 1406972 1406972 0 0 Insertion 1 HET LOC_Os07g03520 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4560-S Chr7 15083740 15083768 0 0 Deletion 28 HOMO FN4560-S Chr7 27571390 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g46190 pectinesterase, putative, expressed FN4560-S Chr7 2977444 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4560-S Chr7 6588263 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4560-S Chr8 20417932 A-C 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN4560-S Chr8 2655604 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4560-S Chr8 3545034 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4560-S Chr8 6771211 6771212 0 0 Deletion 1 HOMO FN4560-S Chr8 8739977 8739978 0 0 Deletion 1 HOMO FN4560-S Chr9 18988943 18988955 0 0 Deletion 12 HOMO LOC_Os09g31486 DnaK family protein, putative, expressed FN4560-S Chr9 4682623 4682641 0 0 Deletion 18 HOMO LOC_Os09g08860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4560-S Chr9 5805533 5805534 0 0 Deletion 1 HOMO FN4560-S Chr9 5891285 5891286 0 0 Deletion 1 HOMO FN4560-S Chr9 8253070 8253071 0 0 Deletion 1 HOMO