FN4592-S Chr1 11368922 11368923 0 0 Deletion 1 HOMO FN4592-S Chr1 1301058 1301058 0 0 Insertion 1 HET FN4592-S Chr1 14254043 14254074 0 0 Deletion 31 HOMO FN4592-S Chr1 24054246 C-T 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN4592-S Chr1 34860562 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr1 35281008 35281009 0 0 Deletion 1 HOMO FN4592-S Chr1 36608886 36608887 0 0 Deletion 1 HOMO FN4592-S Chr1 4090441 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4592-S Chr10 15560826 15560826 0 0 Insertion 1 HET FN4592-S Chr10 5255646 5898156 0 0 Inversion 642511 HET FN4592-S Chr10 5898154 Chr8 19840485 0 Translocation 0 HET FN4592-S Chr10 7101348 Chr8 19840482 0 Translocation 0 HET FN4592-S Chr11 12737587 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g22190 transposon protein, putative, unclassified FN4592-S Chr11 1843223 1843253 0 0 Deletion 30 HOMO LOC_Os11g04420 AIG2-like family domain containing protein, expressed FN4592-S Chr11 25275166 25275166 0 0 Insertion 20 HET FN4592-S Chr11 7573790 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4592-S Chr11 9746822 10144397 0 0 Inversion 397576 HOMO FN4592-S Chr11 9746827 10144401 0 0 Inversion 397575 HOMO FN4592-S Chr12 10622806 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr12 12668133 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4592-S Chr12 13484099 13484100 0 0 Deletion 1 HOMO FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27560 expressed protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27570 retrotransposon protein, putative, unclassified FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27580 retrotransposon protein, putative, unclassified, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27590 retrotransposon protein, putative, unclassified, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27610 retrotransposon protein, putative, unclassified, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27640 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27650 hypothetical protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27670 tetratricopeptide TPR_4, putative, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27680 retrotransposon, putative, centromere-specific, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27690 expressed protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27710 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27720 hypothetical protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27730 retrotransposon protein, putative, Ty1-copia subclass, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27740 expressed protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27750 OsFBX441 - F-box domain containing protein, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27760 OsFBX442 - F-box domain containing protein, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27770 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27780 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27790 OsFBX443 - F-box domain containing protein, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27800 retrotransposon protein, putative, unclassified, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27810 OsFBX444 - F-box domain containing protein, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27820 hypothetical protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27830 dehydrogenase/reductase, putative, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27840 expressed protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27850 LGC1, putative, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27860 retrotransposon protein, putative, unclassified, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27880 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27920 expressed protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27930 expressed protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27940 expressed protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27950 expressed protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27960 expressed protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27980 transposon protein, putative, unclassified, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g27994 expressed protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g28010 hypothetical protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g28015 expressed protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g28020 hypothetical protein FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g28040 NBS-LRR disease resistance protein, putative, expressed FN4592-S Chr12 16223001 16563000 0 0 Deletion 340000 HET LOC_Os12g28050 NBS-LRR disease resistance protein, putative, expressed FN4592-S Chr12 16305149 16305149 0 0 Insertion 1 HET FN4592-S Chr12 18044659 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g30120 retrotransposon protein, putative, unclassified, expressed FN4592-S Chr12 23358334 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g38020 retrotransposon protein, putative, unclassified, expressed FN4592-S Chr12 23358335 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g38020 retrotransposon protein, putative, unclassified, expressed FN4592-S Chr12 23889236 Chr2 34925368 0 Translocation 0 HET LOC_Os02g39570 ACT domain containing protein, expressed FN4592-S Chr12 23889239 Chr2 34924047 0 Translocation 0 HET LOC_Os02g39570 ACT domain containing protein, expressed FN4592-S Chr12 27150281 27150296 0 0 Deletion 15 HOMO FN4592-S Chr12 4009772 T-A 0 0 Single Base Substitution 0 INTRON HET FN4592-S Chr2 14730535 14730537 0 0 Deletion 2 HOMO FN4592-S Chr2 18018446 A-G 0 0 Single Base Substitution 0 INTRON HET FN4592-S Chr2 18053437 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr2 18901490 G-C 0 0 Single Base Substitution 0 INTRON HET FN4592-S Chr2 24870820 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr2 25747659 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os02g42840 retrotransposon protein, putative, LINE subclass, expressed FN4592-S Chr2 4685653 C-G 0 0 Single Base Substitution 0 INTRON HET FN4592-S Chr2 4685655 A-G 0 0 Single Base Substitution 0 INTRON HET FN4592-S Chr2 8024890 G-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN4592-S Chr2 9166356 9166357 0 0 Deletion 1 HOMO FN4592-S Chr3 10799270 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr3 1252886 1252887 0 0 Deletion 1 HOMO FN4592-S Chr3 13451929 C-T 0 0 Single Base Substitution 0 INTRON HET FN4592-S Chr3 19002935 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os03g33230 retrotransposon protein, putative, unclassified, expressed FN4592-S Chr3 19443227 19443228 0 0 Deletion 1 HOMO FN4592-S Chr3 23148688 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr3 4248171 4248171 0 0 Insertion 1 HET FN4592-S Chr3 5406896 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN4592-S Chr3 6276381 T-C 0 0 Single Base Substitution 0 INTRON HET FN4592-S Chr3 6371457 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN4592-S Chr4 11369937 11369937 0 0 Insertion 26 HET LOC_Os04g20320 retrotransposon protein, putative, unclassified, expressed FN4592-S Chr4 1140548 1140550 0 0 Deletion 2 HOMO FN4592-S Chr4 23215722 23215725 0 0 Deletion 3 HOMO FN4592-S Chr4 3017941 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr4 33034017 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr4 7496500 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4592-S Chr5 11213760 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr5 18612631 18612633 0 0 Deletion 2 HOMO FN4592-S Chr5 24401489 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr5 25165963 C-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN4592-S Chr5 27653724 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr5 28767982 A-C 0 0 Single Base Substitution 0 INTRON HET FN4592-S Chr5 3647749 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN4592-S Chr5 766869 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4592-S Chr6 15902980 15902981 0 0 Deletion 1 HOMO FN4592-S Chr6 17502866 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr6 17800376 T-G 0 0 Single Base Substitution 0 INTRON HET FN4592-S Chr6 18129913 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr6 18637639 18637640 0 0 Deletion 1 HOMO FN4592-S Chr6 20321735 20321735 0 0 Insertion 2 HET FN4592-S Chr6 22816352 22816352 0 0 Insertion 1 HET FN4592-S Chr6 24010704 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g40330 MYB family transcription factor, putative, expressed FN4592-S Chr6 26358240 26358249 0 0 Deletion 9 HOMO FN4592-S Chr6 26384691 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr6 3688837 3688837 0 0 Insertion 1 HET FN4592-S Chr6 4692483 G-C 0 0 Single Base Substitution 0 INTRON HOMO FN4592-S Chr6 9471488 9471489 0 0 Deletion 1 HOMO FN4592-S Chr7 10609919 10609919 0 0 Insertion 1 HET FN4592-S Chr7 11693880 G-A 0 0 Single Base Substitution 0 INTRON HET FN4592-S Chr7 12477071 12477071 0 0 Insertion 1 HET FN4592-S Chr7 16461582 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr7 20897791 20897791 0 0 Insertion 1 HET FN4592-S Chr7 21828487 G-A 0 0 Single Base Substitution 0 INTRON HET FN4592-S Chr7 22177919 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr7 23175571 23175577 0 0 Deletion 6 HOMO FN4592-S Chr7 5932343 G-T 0 0 Single Base Substitution 0 INTRON HET FN4592-S Chr7 801264 801265 0 0 Deletion 1 HOMO FN4592-S Chr7 9346322 9346324 0 0 Deletion 2 HOMO FN4592-S Chr8 1023330 1023341 0 0 Deletion 11 HOMO FN4592-S Chr8 11180954 11181019 0 0 Deletion 65 HOMO LOC_Os08g18730 retrotransposon protein, putative, unclassified, expressed FN4592-S Chr8 14658478 14658509 0 0 Deletion 31 HOMO FN4592-S Chr8 19402890 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr8 26348950 26348950 0 0 Insertion 1 HET FN4592-S Chr8 5018267 Chr7 27449005 0 Translocation 0 HET LOC_Os07g09510 retrotransposon protein, putative, unclassified, expressed FN4592-S Chr8 5018307 Chr7 27449005 0 Translocation 0 HET LOC_Os07g09510 retrotransposon protein, putative, unclassified, expressed FN4592-S Chr8 7126105 7126105 0 0 Insertion 1 HET FN4592-S Chr8 7401840 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g12500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4592-S Chr9 20880034 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr9 4699418 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4592-S Chr9 4925001 4936000 0 0 Deletion 11000 HET LOC_Os09g09210 expressed protein FN4592-S Chr9 4925001 4936000 0 0 Deletion 11000 HET LOC_Os09g09220 protein kinase domain containing protein, expressed FN4592-S Chr9 8116599 8116599 0 0 Insertion 1 HET FN4592-S Chr9 8845257 8845258 0 0 Deletion 1 HOMO