FN4593-S Chr1 14002596 C-G 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os01g24860 retrotransposon protein, putative, unclassified, expressed FN4593-S Chr1 16199954 16199954 0 0 Insertion 1 HET FN4593-S Chr1 29237735 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr1 31606402 31606567 0 0 Inversion 166 HET FN4593-S Chr1 32147874 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr1 37483809 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr1 4732351 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g09305 EMB1895, putative, expressed FN4593-S Chr1 49483 C-T 0 0 Single Base Substitution 0 INTRON HET FN4593-S Chr10 10075169 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr10 22292810 22292814 0 0 Deletion 4 HOMO FN4593-S Chr10 3955438 G-A 0 0 Single Base Substitution 0 INTRON HET FN4593-S Chr11 18316864 A-G 0 0 Single Base Substitution 0 INTRON HET FN4593-S Chr11 18799919 18799921 0 0 Deletion 2 HOMO LOC_Os11g31970 retrotransposon protein, putative, Ty1-copia subclass, expressed FN4593-S Chr11 22074866 22074871 0 0 Deletion 5 HOMO FN4593-S Chr11 4475186 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN4593-S Chr12 11252001 11272000 0 0 Deletion 20000 HET LOC_Os12g19370 DNA polymerase I family protein, expressed FN4593-S Chr12 11252001 11272000 0 0 Deletion 20000 HET LOC_Os12g19381 ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed FN4593-S Chr12 11290001 11331000 0 0 Deletion 41000 HET LOC_Os12g19440 hypothetical protein FN4593-S Chr12 11290001 11331000 0 0 Deletion 41000 HET LOC_Os12g19450 retrotransposon protein, putative, unclassified FN4593-S Chr12 11290001 11331000 0 0 Deletion 41000 HET LOC_Os12g19460 transposon protein, putative, unclassified, expressed FN4593-S Chr12 11290001 11331000 0 0 Deletion 41000 HET LOC_Os12g19470 ribulose bisphosphate carboxylase small chain, chloroplast precursor, putative, expressed FN4593-S Chr12 11290001 11331000 0 0 Deletion 41000 HET LOC_Os12g19480 retrotransposon, putative, centromere-specific, expressed FN4593-S Chr12 1700187 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN4593-S Chr12 1803275 1803275 0 0 Insertion 1 HET FN4593-S Chr12 19681170 19681170 0 0 Insertion 1 HET FN4593-S Chr12 22999369 22999374 0 0 Deletion 5 HOMO FN4593-S Chr12 23863284 23863284 0 0 Insertion 6 HET FN4593-S Chr12 25866858 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr12 27383223 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr12 8491249 8491249 0 0 Insertion 1 HET FN4593-S Chr2 10522458 10522463 0 0 Deletion 5 HOMO FN4593-S Chr2 10689479 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr2 17034940 17035035 0 0 Deletion 95 HOMO FN4593-S Chr3 18742333 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr3 19845978 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr3 27050798 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr3 27051204 27295370 0 0 Inversion 244167 HET LOC_Os03g47730 homeobox domain containing protein, expressed FN4593-S Chr3 27051214 27295379 0 0 Inversion 244166 HET LOC_Os03g47730 homeobox domain containing protein, expressed FN4593-S Chr3 2926696 A-G 0 0 Single Base Substitution 0 INTRON HET FN4593-S Chr3 35265592 35706611 0 0 Inversion 441020 HET FN4593-S Chr3 35706001 35723000 0 0 Deletion 17000 HET LOC_Os03g63170 transposon protein, putative, unclassified, expressed FN4593-S Chr3 35706001 35723000 0 0 Deletion 17000 HET LOC_Os03g63190 expressed protein FN4593-S Chr3 35706001 35723000 0 0 Deletion 17000 HET LOC_Os03g63200 powdery mildew resistance protein PM3b, putative, expressed FN4593-S Chr3 35706001 35723000 0 0 Deletion 17000 HET LOC_Os03g63210 expressed protein FN4593-S Chr3 35726001 35733000 0 0 Deletion 7000 HET LOC_Os03g63220 powdery mildew resistance protein PM3A, putative, expressed FN4593-S Chr3 35726001 35733000 0 0 Deletion 7000 HET LOC_Os03g63230 retrotransposon protein, putative, unclassified, expressed FN4593-S Chr3 35726001 35733000 0 0 Deletion 7000 HET LOC_Os03g63240 disease resistance protein, putative, expressed FN4593-S Chr3 35894609 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr3 7837705 G-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os03g14410 retrotransposon protein, putative, unclassified, expressed FN4593-S Chr3 7837706 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g14410 retrotransposon protein, putative, unclassified, expressed FN4593-S Chr4 10630833 10630834 0 0 Deletion 1 HOMO FN4593-S Chr4 10817734 10817734 0 0 Insertion 1 HET FN4593-S Chr4 1104389 1104390 0 0 Deletion 1 HOMO FN4593-S Chr4 11752493 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4593-S Chr4 13452447 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g23520 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4593-S Chr4 13548383 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4593-S Chr4 15965200 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr4 29884868 A-G 0 0 Single Base Substitution 0 START_GAINED HOMO FN4593-S Chr4 30825491 30825578 0 0 Deletion 87 HOMO FN4593-S Chr4 4967720 T-C 0 0 Single Base Substitution 0 INTRON HET FN4593-S Chr4 6809689 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g12340 retrotransposon protein, putative, Ty3-gypsy subclass FN4593-S Chr5 1440475 1440477 0 0 Deletion 2 HOMO FN4593-S Chr5 19153826 19153826 0 0 Insertion 25 HET FN4593-S Chr5 21261806 21261807 0 0 Deletion 1 HOMO FN4593-S Chr5 26747253 26747253 0 0 Insertion 1 HET FN4593-S Chr5 28299404 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN4593-S Chr5 28299405 G-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN4593-S Chr5 28299406 A-T 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN4593-S Chr6 10982955 10982955 0 0 Insertion 1 HET LOC_Os06g19310 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN4593-S Chr6 12208940 12208941 0 0 Deletion 1 HOMO FN4593-S Chr6 21756477 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN4593-S Chr6 2710292 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g05920 Rf1, mitochondrial precursor, putative, expressed FN4593-S Chr6 29215735 29215735 0 0 Insertion 1 HET FN4593-S Chr7 14098972 C-T 0 0 Single Base Substitution 0 INTRON HET FN4593-S Chr7 21272723 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr7 25913627 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr7 26047518 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr7 27342456 27342456 0 0 Insertion 3 HET LOC_Os07g45810 conserved hypothetical protein FN4593-S Chr7 6344668 6344673 0 0 Deletion 5 HOMO FN4593-S Chr7 6535574 6535574 0 0 Insertion 1 HET FN4593-S Chr7 6887092 C-A 0 0 Single Base Substitution 0 INTRON HET FN4593-S Chr7 6887093 A-G 0 0 Single Base Substitution 0 INTRON HET FN4593-S Chr8 12968546 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr8 15396706 15396707 0 0 Deletion 1 HOMO FN4593-S Chr8 19271780 19271781 0 0 Deletion 1 HOMO FN4593-S Chr8 21065454 21065870 0 0 Inversion 417 HET FN4593-S Chr8 26411402 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN4593-S Chr8 2724643 2724644 0 0 Deletion 1 HOMO FN4593-S Chr8 5824609 5824611 0 0 Deletion 2 HOMO FN4593-S Chr8 6020906 T-A 0 0 Single Base Substitution 0 SPLICE_SITE_REGION HET FN4593-S Chr8 7895571 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4593-S Chr9 16196216 G-T 0 0 Single Base Substitution 0 INTRON HET FN4593-S Chr9 1711539 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN4593-S Chr9 18823226 18823227 0 0 Deletion 1 HOMO FN4593-S Chr9 20615608 20983158 0 0 Inversion 367551 HET FN4593-S Chr9 20983160 Chr4 29253461 0 Translocation 0 HOMO FN4593-S Chr9 20985731 Chr4 29253460 0 Translocation 0 HET LOC_Os09g36360 protein of unknown function containing protein, expressed FN4593-S Chr9 20985741 21027042 0 0 Inversion 41302 HET LOC_Os09g36360 protein of unknown function containing protein, expressed FN4593-S Chr9 6149586 6149586 0 0 Insertion 19 HET FN4593-S Chr9 7293226 7293226 0 0 Insertion 76 HET