FN475-S Chr1 10815639 10815649 0 0 Deletion 10 FN475-S Chr1 21498348 21498348 0 0 Insertion 3 FN475-S Chr1 25300408 25300408 0 0 Insertion 2 FN475-S Chr1 25835109 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN475-S Chr1 3556922 3556933 0 0 Deletion 11 FN475-S Chr1 40082275 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g68990 retrotransposon, putative, centromere-specific, expressed FN475-S Chr1 41060784 41060787 0 0 Deletion 3 FN475-S Chr1 5787958 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN475-S Chr1 9214305 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN475-S Chr10 10146001 10189000 0 0 Deletion 43000 LOC_Os10g20200 retrotransposon protein, putative, unclassified FN475-S Chr10 10146001 10189000 0 0 Deletion 43000 LOC_Os10g20210 retrotransposon protein, putative, unclassified FN475-S Chr10 10146001 10189000 0 0 Deletion 43000 LOC_Os10g20220 retrotransposon protein, putative, unclassified, expressed FN475-S Chr10 10146001 10189000 0 0 Deletion 43000 LOC_Os10g20230 expressed protein FN475-S Chr10 10146001 10189000 0 0 Deletion 43000 LOC_Os10g20235 expressed protein FN475-S Chr10 10146001 10189000 0 0 Deletion 43000 LOC_Os10g20240 syntaxin 6, N-terminal domain containing protein, expressed FN475-S Chr10 10146001 10189000 0 0 Deletion 43000 LOC_Os10g20250 membrane associated DUF588 domain containing protein, putative, expressed FN475-S Chr10 10146001 10189000 0 0 Deletion 43000 LOC_Os10g20260 CSLF7 - cellulose synthase-like family F; beta1,3;1,4 glucan synthase, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20290 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20300 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20310 thioredoxin fold, putative, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20320 transposon protein, putative, CACTA, En/Spm sub-class FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20330 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20340 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20350 MATE efflux family protein, putative, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20370 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20380 uncharacterized transporter C11D3.06, putative, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20390 MATE efflux family protein, putative, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20400 retrotransposon protein, putative, unclassified, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20410 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20420 hypothetical protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20430 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20440 retrotransposon protein, putative, unclassified, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20450 MATE efflux family protein, putative, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20460 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20470 MATE efflux family protein, putative, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20480 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20500 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20510 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20520 hypothetical protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20530 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20540 DEFL69 - Defensin and Defensin-like DEFL family FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20550 DEFL70 - Defensin and Defensin-like DEFL family, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20560 DEFL81 - Defensin and Defensin-like DEFL family FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20580 retrotransposon protein, putative, Ty3-gypsy subclass FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20590 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20600 zinc finger, C3HC4 type domain containing protein, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20610 laccase-15 precursor, putative, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20630 vacuolar-sorting receptor precursor, putative, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20640 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20650 glucan endo-1,3-beta-glucosidase-related, putative, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20660 retrotransposon protein, putative, unclassified, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20670 retrotransposon protein, putative, unclassified, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20680 retrotransposon protein, putative, unclassified FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20690 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20700 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20710 formin-like protein 6 precursor, putative, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20720 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20730 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20740 hypothetical protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20750 retrotransposon protein, putative, unclassified, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20770 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20780 retrotransposon, putative, centromere-specific, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20794 transposon protein, putative, CACTA, En/Spm sub-class FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20820 hypothetical protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20830 LTPL133 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20840 LTPL134 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20860 protease inhibitor/seed storage/LTP family, putative, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20870 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20880 LTPL136 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20890 LTPL137 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20900 hypothetical protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20910 40S ribosomal protein S23, putative FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20920 retrotransposon protein, putative, unclassified, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20940 retrotransposon protein, putative, Ty3-gypsy subclass FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20950 expressed protein FN475-S Chr10 10203001 10614000 0 0 Deletion 411000 LOC_Os10g20960 retrotransposon protein, putative, unclassified, expressed FN475-S Chr10 13397231 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN475-S Chr10 3059229 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN475-S Chr10 3681703 3681704 0 0 Deletion 1 FN475-S Chr10 3708102 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN475-S Chr11 6927448 Chr7 19968670 0 Translocation 0 LOC_Os11g12410 serpin domain containing protein, putative, expressed FN475-S Chr11 8128348 8128351 0 0 Deletion 3 FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27120 retrotransposon protein, putative, unclassified, expressed FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27130 retrotransposon protein, putative, Ty3-gypsy subclass FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27150 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27160 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27170 retrotransposon protein, putative, Ty3-gypsy subclass FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27180 retrotransposon protein, putative, Ty3-gypsy subclass FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27190 expressed protein FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27200 expressed protein FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27210 expressed protein FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27220 transferase family protein, putative, expressed FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27230 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27240 transposon protein, putative, CACTA, En/Spm sub-class FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27254 transferase family protein, putative, expressed FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27270 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27280 hypothetical protein FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27290 hypothetical protein FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27300 transposon protein, putative, CACTA, En/Spm sub-class FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27310 retrotransposon protein, putative, unclassified, expressed FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27320 retrotransposon protein, putative, unclassified FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27330 transferase family protein, putative, expressed FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27335 expressed protein FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27340 expressed protein FN475-S Chr12 15911001 16092000 0 0 Deletion 181000 LOC_Os12g27350 10-deacetylbaccatin III 10-O-acetyltransferase, putative, expressed FN475-S Chr12 8958515 8958529 0 0 Deletion 14 FN475-S Chr2 26291154 26291175 0 0 Deletion 21 FN475-S Chr2 26348649 26363263 0 0 Deletion 14614 LOC_Os02g43670 transferase family protein, putative, expressed FN475-S Chr3 10822646 10834608 0 0 Inversion 11962 FN475-S Chr3 10822666 10834657 0 0 Inversion 11991 FN475-S Chr3 14848619 14848620 0 0 Deletion 1 FN475-S Chr3 27287837 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN475-S Chr3 32170465 32170473 0 0 Deletion 8 FN475-S Chr3 3288896 C-T 0 0 Single Base Substitution 0 INTRON HET FN475-S Chr3 36206712 36206725 0 0 Deletion 13 FN475-S Chr3 4286486 4286486 0 0 Insertion 3 FN475-S Chr4 10329885 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN475-S Chr4 19428464 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN475-S Chr4 27920078 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN475-S Chr4 3587908 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN475-S Chr5 21433651 A-C 0 0 Single Base Substitution 0 INTRON HOMO FN475-S Chr5 3640669 3640669 0 0 Insertion 2 FN475-S Chr5 3659755 3659758 0 0 Deletion 3 LOC_Os05g06980 expressed protein FN475-S Chr5 9779045 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN475-S Chr6 22068715 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g37340 retrotransposon protein, putative, unclassified, expressed FN475-S Chr6 29608855 29608857 0 0 Deletion 2 LOC_Os06g48900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN475-S Chr6 6547491 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN475-S Chr6 7967683 7967687 0 0 Deletion 4 LOC_Os06g14280 cysteine-rich repeat secretory protein precursor, putative, expressed FN475-S Chr7 15633138 15633139 0 0 Deletion 1 FN475-S Chr7 15825732 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g27230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN475-S Chr7 21833416 21833417 0 0 Deletion 1 FN475-S Chr8 13917901 13917902 0 0 Deletion 1 FN475-S Chr8 14121224 14121253 0 0 Deletion 29 FN475-S Chr8 14993946 15969327 0 0 Inversion 975381 FN475-S Chr8 14994014 Chr3 4141742 0 Translocation 0 LOC_Os03g08110 hydrolase protein, putative, expressed FN475-S Chr8 15845572 15928124 0 0 Inversion 82552 FN475-S Chr8 15848249 15928134 0 0 Inversion 79885 FN475-S Chr8 15902750 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN475-S Chr8 15965089 15969051 0 0 Inversion 3962 FN475-S Chr8 2110528 T-C 0 0 Single Base Substitution 0 INTRON HET FN475-S Chr8 21320126 21320126 0 0 Insertion 2 FN475-S Chr8 550145 550145 0 0 Insertion 2 FN475-S Chr9 14702458 14702459 0 0 Deletion 1 FN475-S Chr9 17071614 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN475-S Chr9 20534059 20534060 0 0 Deletion 1 FN475-S Chr9 2505859 2505862 0 0 Deletion 3 LOC_Os09g04720 SWIB/MDM2 domain containing protein, expressed FN475-S Chr9 3659553 G-A 0 0 Single Base Substitution 0 INTRON HOMO