FN4856-S Chr1 14459376 C-T 0 0 Single Base Substitution 0 HET FN4856-S Chr1 16024082 T-C 0 0 Single Base Substitution 0 HET FN4856-S Chr1 16257625 C-T 0 0 Single Base Substitution 0 HET FN4856-S Chr1 18682165 18682165 0 0 Insertion 1 HET FN4856-S Chr1 19221234 A-G 0 0 Single Base Substitution 0 HET FN4856-S Chr1 19228943 A-G 0 0 Single Base Substitution 0 HET FN4856-S Chr1 19934529 C-T 0 0 Single Base Substitution 0 HET FN4856-S Chr1 21619219 21619227 0 0 Deletion 9 HET FN4856-S Chr1 22497554 22497792 0 0 Inversion 238 HET FN4856-S Chr1 24878683 24878683 0 0 Insertion 1 HET FN4856-S Chr1 2838437 2838437 0 0 Deletion 1 HOMO FN4856-S Chr1 3118600 3118600 0 0 Deletion 1 HET FN4856-S Chr1 36715247 36783420 0 0 Inversion 68173 HET FN4856-S Chr1 37492112 37492112 0 0 Insertion 4 HET LOC_Os01g64600 retrotransposon protein, putative, unclassified, expressed FN4856-S Chr1 39326543 C-T 0 0 Single Base Substitution 0 HET FN4856-S Chr1 41510038 C-G 0 0 Single Base Substitution 0 HET FN4856-S Chr1 41873491 G-T 0 0 Single Base Substitution 0 HOMO FN4856-S Chr1 42120284 42120284 0 0 Deletion 1 HET FN4856-S Chr10 13912910 G-A 0 0 Single Base Substitution 0 HET FN4856-S Chr10 15546224 15546224 0 0 Deletion 1 HET FN4856-S Chr10 2184019 G-A 0 0 Single Base Substitution 0 HET FN4856-S Chr10 21963548 21963548 0 0 Deletion 1 HET FN4856-S Chr10 5777679 G-A 0 0 Single Base Substitution 0 HET FN4856-S Chr10 7921082 7921082 0 0 Insertion 1 HET FN4856-S Chr11 10895601 10895601 0 0 Insertion 1 HOMO FN4856-S Chr11 16218921 G-A 0 0 Single Base Substitution 0 HOMO FN4856-S Chr11 21531606 21531608 0 0 Deletion 3 HOMO FN4856-S Chr11 27121482 27121482 0 0 Insertion 3 HET FN4856-S Chr11 27340547 27340547 0 0 Deletion 1 HET FN4856-S Chr11 2812897 C-A 0 0 Single Base Substitution 0 HET FN4856-S Chr11 8967508 8967508 0 0 Insertion 1 HOMO FN4856-S Chr12 10821413 10821613 0 0 Inversion 200 HET FN4856-S Chr12 11815189 T-A 0 0 Single Base Substitution 0 HET FN4856-S Chr12 11815193 T-A 0 0 Single Base Substitution 0 HET FN4856-S Chr12 13724499 13724501 0 0 Deletion 3 HET LOC_Os12g24120 retrotransposon protein, putative, unclassified FN4856-S Chr12 14767844 T-C 0 0 Single Base Substitution 0 HET FN4856-S Chr12 16835975 C-T 0 0 Single Base Substitution 0 HET LOC_Os12g28490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4856-S Chr12 20719082 20719082 0 0 Deletion 1 HET FN4856-S Chr12 25528032 T-A 0 0 Single Base Substitution 0 HOMO FN4856-S Chr12 25725438 25725438 0 0 Insertion 92 HET FN4856-S Chr12 25907977 G-A 0 0 Single Base Substitution 0 HET FN4856-S Chr12 4075812 C-T 0 0 Single Base Substitution 0 HET FN4856-S Chr2 14551389 14551392 0 0 Deletion 4 HET FN4856-S Chr2 1803024 C-A 0 0 Single Base Substitution 0 HET FN4856-S Chr2 242780 C-A 0 0 Single Base Substitution 0 HET FN4856-S Chr2 26793248 26793248 0 0 Insertion 6 HET FN4856-S Chr2 27519849 G-T 0 0 Single Base Substitution 0 HET FN4856-S Chr2 33086741 A-G 0 0 Single Base Substitution 0 HET FN4856-S Chr2 34287786 34287786 0 0 Insertion 4 HOMO FN4856-S Chr2 35267386 A-C 0 0 Single Base Substitution 0 HET FN4856-S Chr2 5259223 G-A 0 0 Single Base Substitution 0 HET FN4856-S Chr2 6514272 C-T 0 0 Single Base Substitution 0 HET FN4856-S Chr2 9794742 9794742 0 0 Insertion 8 HET FN4856-S Chr3 18346091 18346091 0 0 Insertion 1 HET FN4856-S Chr3 26286924 26286925 0 0 Deletion 2 HOMO LOC_Os03g46470 metal cation transporter, putative, expressed FN4856-S Chr3 27646308 G-A 0 0 Single Base Substitution 0 HET FN4856-S Chr3 32604039 32604039 0 0 Insertion 1 HOMO FN4856-S Chr3 36068815 36068815 0 0 Insertion 2 HET FN4856-S Chr3 451198 A-T 0 0 Single Base Substitution 0 HET FN4856-S Chr3 4823278 4823278 0 0 Deletion 1 HET FN4856-S Chr3 6606134 C-T 0 0 Single Base Substitution 0 HET LOC_Os03g12490 transposon protein, putative, unclassified, expressed FN4856-S Chr4 1739195 C-A 0 0 Single Base Substitution 0 HET LOC_Os04g03850 OsSub39 - Putative Subtilisin homologue, expressed FN4856-S Chr4 1748098 T-A 0 0 Single Base Substitution 0 HET FN4856-S Chr4 17563680 G-T 0 0 Single Base Substitution 0 HET FN4856-S Chr4 17875735 17875763 0 0 Deletion 29 HET FN4856-S Chr4 18856459 18856459 0 0 Insertion 1 HET FN4856-S Chr4 21536977 21537006 0 0 Deletion 30 HET FN4856-S Chr4 22278621 G-A 0 0 Single Base Substitution 0 HET FN4856-S Chr4 26847581 C-T 0 0 Single Base Substitution 0 HET FN4856-S Chr4 27029658 T-C 0 0 Single Base Substitution 0 HET FN4856-S Chr4 31842454 31842545 0 0 Deletion 92 HET FN4856-S Chr4 34436001 34500000 0 0 Deletion 64000 HET LOC_Os04g57830 expressed protein FN4856-S Chr4 34436001 34500000 0 0 Deletion 64000 HET LOC_Os04g57840 transposon protein, putative, unclassified, expressed FN4856-S Chr4 34436001 34500000 0 0 Deletion 64000 HET LOC_Os04g57850 AMP-binding enzyme, putative, expressed FN4856-S Chr4 34436001 34500000 0 0 Deletion 64000 HET LOC_Os04g57860 endoglucanase precursor, putative, expressed FN4856-S Chr4 34436001 34500000 0 0 Deletion 64000 HET LOC_Os04g57870 expressed protein FN4856-S Chr4 34436001 34500000 0 0 Deletion 64000 HET LOC_Os04g57880 heat shock protein DnaJ, putative, expressed FN4856-S Chr4 34436001 34500000 0 0 Deletion 64000 HET LOC_Os04g57890 oligosaccharyl transferase, putative, expressed FN4856-S Chr4 34436001 34500000 0 0 Deletion 64000 HET LOC_Os04g57900 PPR repeat containing protein, expressed FN4856-S Chr4 5406805 5406805 0 0 Deletion 1 HET FN4856-S Chr4 6408683 C-T 0 0 Single Base Substitution 0 HET FN4856-S Chr4 8539551 T-C 0 0 Single Base Substitution 0 HET FN4856-S Chr4 9865346 9865347 0 0 Deletion 2 HET LOC_Os04g17940 retrotransposon protein, putative, unclassified, expressed FN4856-S Chr5 1503701 2283589 0 0 Inversion 779888 HET LOC_Os05g03550 MYB family transcription factor, putative, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03550 MYB family transcription factor, putative, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03560 expressed protein FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03574 expressed protein FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03590 expressed protein FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03600 retrotransposon protein, putative, unclassified, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03610 phospholipase C, putative, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03620 TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03630 dnaJ domain containing protein, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03640 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03650 retrotransposon protein, putative, unclassified, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03660 retrotransposon protein, putative, unclassified, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03680 retrotransposon protein, putative, unclassified, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03700 hypothetical protein FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03710 retrotransposon protein, putative, unclassified FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03730 retrotransposon protein, putative, unclassified FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03740 transcription factor TF2, putative, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03750 expressed protein FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03760 zinc finger family protein, putative, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03770 expressed protein FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03780 cation efflux family protein, putative, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03790 expressed protein FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03800 transposon protein, putative, unclassified, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03810 trehalose phosphatase, putative, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03820 glutamate--cysteine ligase, chloroplast precursor, putative, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03830 aminotransferase, putative, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03840 endoglucanase, putative, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03850 retrotransposon protein, putative, unclassified FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03860 CPuORF3 - conserved peptide uORF-containing transcript, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03865 expressed protein FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03870 expressed protein FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03884 homeobox protein knotted-1-like 6, putative, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03900 WRKY109, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03910 RNA polymerase II-associated protein 3, putative, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03920 TKL_IRAK_DUF26-lf.3 - DUF26 kinases have homology to DUF26 containing loci, expressed FN4856-S Chr5 1504001 1760000 0 0 Deletion 256000 HET LOC_Os05g03930 hypothetical protein FN4856-S Chr5 16264392 C-T 0 0 Single Base Substitution 0 HOMO FN4856-S Chr5 16264415 G-T 0 0 Single Base Substitution 0 HOMO FN4856-S Chr5 1745629 C-T 0 0 Single Base Substitution 0 HOMO LOC_Os05g03910 RNA polymerase II-associated protein 3, putative, expressed FN4856-S Chr5 17466139 C-T 0 0 Single Base Substitution 0 HET FN4856-S Chr5 1760460 2283592 0 0 Inversion 523132 HET FN4856-S Chr5 20214441 C-T 0 0 Single Base Substitution 0 HOMO FN4856-S Chr5 20214442 G-T 0 0 Single Base Substitution 0 HOMO FN4856-S Chr5 20561364 C-T 0 0 Single Base Substitution 0 HET FN4856-S Chr5 22143110 22143110 0 0 Deletion 1 HOMO FN4856-S Chr5 24448941 C-A 0 0 Single Base Substitution 0 HOMO FN4856-S Chr5 26006120 G-T 0 0 Single Base Substitution 0 HET FN4856-S Chr5 28956608 Chr1 2574892 Translocation 0 HOMO FN4856-S Chr5 28956615 Chr1 2574898 Translocation 0 HOMO FN4856-S Chr5 5379369 C-T 0 0 Single Base Substitution 0 HOMO FN4856-S Chr5 6055432 6055432 0 0 Deletion 1 HOMO FN4856-S Chr5 6332703 6332703 0 0 Deletion 1 HOMO FN4856-S Chr5 6464778 6464795 0 0 Deletion 18 HOMO FN4856-S Chr5 765185 G-A 0 0 Single Base Substitution 0 HET FN4856-S Chr5 9730762 9730789 0 0 Deletion 28 HET FN4856-S Chr6 10986230 10986230 0 0 Insertion 1 HET FN4856-S Chr6 11800027 G-T 0 0 Single Base Substitution 0 HET FN4856-S Chr6 11800028 G-T 0 0 Single Base Substitution 0 HET FN4856-S Chr6 13644342 T-A 0 0 Single Base Substitution 0 HET FN4856-S Chr6 13725191 14322990 0 0 Inversion 597799 HET LOC_Os06g23530 pre-mRNA-splicing factor ATP-dependent RNA helicase, putative, expressed FN4856-S Chr6 15569340 C-T 0 0 Single Base Substitution 0 HET LOC_Os06g27500 retrotransposon protein, putative, unclassified FN4856-S Chr6 25910623 G-A 0 0 Single Base Substitution 0 HET FN4856-S Chr6 27095370 27095370 0 0 Deletion 1 HOMO FN4856-S Chr6 8156811 C-A 0 0 Single Base Substitution 0 HET LOC_Os06g14510 glucose-6-phosphate isomerase, putative, expressed FN4856-S Chr6 9288149 Chr1 15864273 Translocation 0 HET FN4856-S Chr7 12624715 Chr4 8108326 Translocation 0 HET FN4856-S Chr7 12625129 Chr4 8116302 Translocation 0 HET FN4856-S Chr7 15098712 15098712 0 0 Insertion 1 HET FN4856-S Chr7 21047807 G-A 0 0 Single Base Substitution 0 HET FN4856-S Chr7 21390174 21390174 0 0 Deletion 1 HOMO LOC_Os07g35710 transposon protein, putative, unclassified, expressed FN4856-S Chr7 25008596 C-T 0 0 Single Base Substitution 0 HOMO FN4856-S Chr7 25391100 C-T 0 0 Single Base Substitution 0 HET FN4856-S Chr7 25947886 G-A 0 0 Single Base Substitution 0 HET FN4856-S Chr7 25947887 G-A 0 0 Single Base Substitution 0 HET LOC_Os07g43350 expressed protein FN4856-S Chr7 3614704 3614705 0 0 Deletion 2 HOMO FN4856-S Chr7 8984896 8984896 0 0 Deletion 1 HOMO FN4856-S Chr7 9208078 C-T 0 0 Single Base Substitution 0 HET FN4856-S Chr8 11741992 11741992 0 0 Insertion 1 HET FN4856-S Chr8 12633204 12633204 0 0 Insertion 1 HET FN4856-S Chr8 12692341 C-A 0 0 Single Base Substitution 0 HET FN4856-S Chr8 13399329 13399329 0 0 Insertion 63 HET FN4856-S Chr8 1544448 C-T 0 0 Single Base Substitution 0 HET LOC_Os08g03330 expressed protein FN4856-S Chr8 18313738 18313738 0 0 Insertion 1 HET FN4856-S Chr8 20244060 20244060 0 0 Insertion 127 HET FN4856-S Chr8 21108812 T-A 0 0 Single Base Substitution 0 HET FN4856-S Chr8 21249248 G-A 0 0 Single Base Substitution 0 HET FN4856-S Chr8 219977 G-A 0 0 Single Base Substitution 0 HET FN4856-S Chr8 2707618 2707618 0 0 Insertion 1 HET FN4856-S Chr8 27848783 C-T 0 0 Single Base Substitution 0 HOMO FN4856-S Chr8 7603220 A-G 0 0 Single Base Substitution 0 HET FN4856-S Chr8 8874785 C-T 0 0 Single Base Substitution 0 HET LOC_Os08g14760 AMP-binding domain containing protein, expressed FN4856-S Chr9 15307365 C-G 0 0 Single Base Substitution 0 HOMO FN4856-S Chr9 16907076 G-T 0 0 Single Base Substitution 0 HET FN4856-S Chr9 18068643 18068643 0 0 Insertion 1 HET FN4856-S Chr9 18303170 18303170 0 0 Deletion 1 HET FN4856-S Chr9 188393 C-T 0 0 Single Base Substitution 0 HET FN4856-S Chr9 20733676 A-T 0 0 Single Base Substitution 0 HET FN4856-S Chr9 20820690 T-C 0 0 Single Base Substitution 0 HET FN4856-S Chr9 21262441 T-C 0 0 Single Base Substitution 0 HET FN4856-S Chr9 7110912 A-C 0 0 Single Base Substitution 0 HET FN4856-S Chr9 8966536 T-G 0 0 Single Base Substitution 0 HET