FN490-S Chr1 16141487 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN490-S Chr1 16141488 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN490-S Chr1 20603224 23080540 0 0 Inversion 2477316 FN490-S Chr1 28561197 28561199 0 0 Deletion 2 FN490-S Chr1 28633686 28633687 0 0 Deletion 1 FN490-S Chr1 3142676 3142676 0 0 Insertion 2 FN490-S Chr1 31942738 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN490-S Chr10 13108715 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN490-S Chr10 14914272 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN490-S Chr10 19082288 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN490-S Chr11 1897182 1897182 0 0 Insertion 2 FN490-S Chr12 9292667 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN490-S Chr2 12824651 12824656 0 0 Deletion 5 LOC_Os02g21590 retrotransposon, putative, centromere-specific, expressed FN490-S Chr2 15314956 15314956 0 0 Insertion 3 FN490-S Chr2 19041253 19041254 0 0 Deletion 1 LOC_Os02g32240 retrotransposon protein, putative, unclassified, expressed FN490-S Chr2 19234683 19234731 0 0 Deletion 48 FN490-S Chr2 25952255 25952257 0 0 Deletion 2 LOC_Os02g43090 myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed FN490-S Chr2 35223680 35223690 0 0 Deletion 10 LOC_Os02g57480 transferase family protein, putative, expressed FN490-S Chr3 24861723 24861731 0 0 Deletion 8 LOC_Os03g44240 retrotransposon protein, putative, unclassified, expressed FN490-S Chr3 3148820 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g06280 transposon protein, putative, unclassified FN490-S Chr3 32482479 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN490-S Chr3 4141741 Chr2 17320616 0 Translocation 0 LOC_Os03g08110 hydrolase protein, putative, expressed FN490-S Chr3 783385 783392 0 0 Deletion 7 FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19270 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19280 retrotransposon protein, putative, unclassified, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19300 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19310 expressed protein FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19320 retrotransposon protein, putative, unclassified, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19330 retrotransposon protein, putative, unclassified, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19340 retrotransposon protein, putative, unclassified, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19350 retrotransposon protein, putative, Ty3-gypsy subclass FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19360 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19370 hypothetical protein FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19380 retrotransposon protein, putative, Ty1-copia subclass, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19390 retrotransposon protein, putative, unclassified, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19400 retrotransposon protein, putative, unclassified, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19410 retrotransposon protein, putative, unclassified FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19420 retrotransposon protein, putative, unclassified, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19430 retrotransposon protein, putative, unclassified, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19440 retrotransposon protein, putative, unclassified FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19460 hypothetical protein FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19470 transposon protein, putative, CACTA, En/Spm sub-class FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19490 retrotransposon protein, putative, unclassified FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19500 retrotransposon protein, putative, unclassified, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19510 retrotransposon protein, putative, unclassified FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19520 retrotransposon protein, putative, Ty3-gypsy subclass FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19530 retrotransposon protein, putative, unclassified, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19550 transposon protein, putative, unclassified, expressed FN490-S Chr4 10707001 10890000 0 0 Deletion 183000 LOC_Os04g19560 retrotransposon protein, putative, Ty3-gypsy subclass FN490-S Chr4 13688963 Chr3 928732 0 Translocation 0 LOC_Os04g23930 retrotransposon protein, putative, unclassified, expressed FN490-S Chr4 13690611 Chr3 928698 0 Translocation 0 LOC_Os04g23940 chalcone synthase, putative, expressed FN490-S Chr4 19498802 19498807 0 0 Deletion 5 LOC_Os04g32490 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed FN490-S Chr4 19640934 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN490-S Chr4 21261300 21261301 0 0 Deletion 1 FN490-S Chr4 28833472 28833477 0 0 Deletion 5 FN490-S Chr4 5023424 5023457 0 0 Deletion 33 FN490-S Chr4 988630 988630 0 0 Insertion 1 FN490-S Chr5 13804073 13804074 0 0 Deletion 1 FN490-S Chr5 15527185 15527186 0 0 Deletion 1 FN490-S Chr5 16618582 16912988 0 0 Inversion 294406 FN490-S Chr5 16878175 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN490-S Chr5 18094805 G-A 0 0 Single Base Substitution 0 INTRON HET FN490-S Chr5 18094806 G-A 0 0 Single Base Substitution 0 INTRON HET FN490-S Chr5 18099258 18099266 0 0 Deletion 8 LOC_Os05g31130 retrotransposon protein, putative, unclassified, expressed FN490-S Chr5 19786993 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN490-S Chr5 20943766 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN490-S Chr5 2102781 2102794 0 0 Deletion 13 LOC_Os05g04530 IF, putative, expressed FN490-S Chr5 239217 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN490-S Chr5 26899000 26899006 0 0 Deletion 6 FN490-S Chr5 26899096 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN490-S Chr5 5782372 5782374 0 0 Deletion 2 LOC_Os05g10610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN490-S Chr5 7613987 7613993 0 0 Deletion 6 LOC_Os05g13740 retrotransposon protein, putative, unclassified FN490-S Chr6 16704622 A-G 0 0 Single Base Substitution 0 INTRON HET FN490-S Chr6 25468156 25468162 0 0 Deletion 6 LOC_Os06g42370 retrotransposon protein, putative, unclassified, expressed FN490-S Chr6 5495712 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN490-S Chr6 6032714 6032714 0 0 Insertion 1 LOC_Os06g11430 GRAM domain containing protein, expressed FN490-S Chr7 10499034 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN490-S Chr7 11740182 11740182 0 0 Insertion 2 FN490-S Chr7 17358016 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN490-S Chr7 23386232 23386232 0 0 Insertion 2 FN490-S Chr7 7924013 7924034 0 0 Deletion 21 FN490-S Chr7 9786289 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN490-S Chr7 9814302 9913521 0 0 Inversion 99219 LOC_Os07g16720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN490-S Chr7 9814302 9913521 0 0 Inversion 99219 LOC_Os07g16860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN490-S Chr7 9836050 Chr4 13688950 0 Translocation 0 LOC_Os04g23930 retrotransposon protein, putative, unclassified, expressed FN490-S Chr7 9836063 9913526 0 0 Inversion 77463 LOC_Os07g16860 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN490-S Chr8 10754473 Chr6 19260583 0 Translocation 0 LOC_Os08g17580 hypothetical protein FN490-S Chr8 13964633 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN490-S Chr8 16572355 16572357 0 0 Deletion 2 LOC_Os08g27120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN490-S Chr8 18612794 18612796 0 0 Deletion 2 FN490-S Chr8 25643283 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN490-S Chr8 8912810 8912819 0 0 Deletion 9 FN490-S Chr9 11165165 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN490-S Chr9 19243394 19243404 0 0 Deletion 10 FN490-S Chr9 6829524 6829528 0 0 Deletion 4 FN490-S Chr9 7135469 8290314 0 0 Inversion 1154845 LOC_Os09g12480 ulp1 protease family, C-terminal catalytic domain containing protein, expressed FN490-S Chr9 8714036 9363157 0 0 Tandem-Duplication 649121 FN490-S Chr9 9228853 9235209 0 0 Deletion 6356 LOC_Os09g15200 ankyrin repeat family protein, putative, expressed FN490-S Chr9 9228853 9235209 0 0 Deletion 6356 LOC_Os09g15210 retrotransposon protein, putative, unclassified, expressed FN490-S Chr9 9234527 Chr1 32632617 0 Translocation 0 LOC_Os01g56590 guanine nucleotide exchange family protein, putative, expressed FN490-S Chr9 9234527 Chr1 32632617 0 Translocation 0 LOC_Os09g15210 retrotransposon protein, putative, unclassified, expressed FN490-S Chr9 9235200 Chr1 32632613 0 Translocation 0 LOC_Os01g56590 guanine nucleotide exchange family protein, putative, expressed