FN509-S Chr1 1238423 1238424 0 0 Deletion 1 FN509-S Chr1 17347613 17347614 0 0 Deletion 1 FN509-S Chr1 17347618 17347619 0 0 Deletion 1 FN509-S Chr1 27598377 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g48180 DDT domain containing protein, putative, expressed FN509-S Chr1 31922713 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN509-S Chr1 32794001 32854000 0 0 Deletion 60000 LOC_Os01g56820 AGAP000951-PA, putative, expressed FN509-S Chr1 32794001 32854000 0 0 Deletion 60000 LOC_Os01g56830 transposon protein, putative, unclassified, expressed FN509-S Chr1 32794001 32854000 0 0 Deletion 60000 LOC_Os01g56840 DUF domain containing protein, expressed FN509-S Chr1 32794001 32854000 0 0 Deletion 60000 LOC_Os01g56850 expressed protein FN509-S Chr1 32794001 32854000 0 0 Deletion 60000 LOC_Os01g56860 WD domain, G-beta repeat domain containing protein, expressed FN509-S Chr1 32794001 32854000 0 0 Deletion 60000 LOC_Os01g56870 expressed protein FN509-S Chr1 32794001 32854000 0 0 Deletion 60000 LOC_Os01g56880 purple acid phosphatase precursor, putative, expressed FN509-S Chr1 33171951 33171963 0 0 Deletion 12 FN509-S Chr1 37978036 37978045 0 0 Deletion 9 FN509-S Chr1 42459782 42459782 0 0 Insertion 2 FN509-S Chr10 12101130 12101138 0 0 Deletion 8 FN509-S Chr10 12912980 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g25080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN509-S Chr10 1349709 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr10 14875277 14878003 0 0 Deletion 2726 LOC_Os10g28580 CAF1 family ribonuclease containing protein, expressed FN509-S Chr10 20730853 20730853 0 0 Insertion 1 LOC_Os10g38900 erythronate-4-phosphate dehydrogenase, putative, expressed FN509-S Chr10 6940381 6940384 0 0 Deletion 3 FN509-S Chr11 12560644 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr11 15102067 15102073 0 0 Deletion 6 LOC_Os11g26380 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN509-S Chr11 15161256 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr11 23843690 23843690 0 0 Insertion 1 FN509-S Chr11 24107461 24107473 0 0 Deletion 12 FN509-S Chr11 778173 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr12 13870590 13946527 0 0 Deletion 75937 LOC_Os12g24310 expressed protein FN509-S Chr12 13870590 13946527 0 0 Deletion 75937 LOC_Os12g24320 ATPase 3, putative, expressed FN509-S Chr12 13870590 13946527 0 0 Deletion 75937 LOC_Os12g24330 expressed protein FN509-S Chr12 13870590 13946527 0 0 Deletion 75937 LOC_Os12g24340 retrotransposon protein, putative, unclassified, expressed FN509-S Chr12 13870590 13946527 0 0 Deletion 75937 LOC_Os12g24350 retrotransposon, putative, centromere-specific FN509-S Chr12 13870590 13946527 0 0 Deletion 75937 LOC_Os12g24364 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN509-S Chr12 13870590 13946527 0 0 Deletion 75937 LOC_Os12g24380 retrotransposon, putative, centromere-specific FN509-S Chr12 13870590 13946527 0 0 Deletion 75937 LOC_Os12g24390 retrotransposon protein, putative, unclassified, expressed FN509-S Chr12 13870590 13946527 0 0 Deletion 75937 LOC_Os12g24400 transposon protein, putative, unclassified, expressed FN509-S Chr12 13870590 13946527 0 0 Deletion 75937 LOC_Os12g24410 expressed protein FN509-S Chr12 13870590 13946527 0 0 Deletion 75937 LOC_Os12g24420 cyclin-dependent kinase G-1, putative, expressed FN509-S Chr12 13870590 13946527 0 0 Deletion 75937 LOC_Os12g24430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN509-S Chr12 19580079 A-T 0 0 Single Base Substitution 0 INTRON HET FN509-S Chr2 24714010 24714011 0 0 Deletion 1 LOC_Os02g40770 SET domain containing protein, expressed FN509-S Chr2 35526121 35526121 0 0 Insertion 2 FN509-S Chr2 5761468 G-C 0 0 Single Base Substitution 0 INTRON HET FN509-S Chr2 9335635 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN509-S Chr3 16081899 16082404 0 0 Deletion 505 FN509-S Chr3 18711105 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN509-S Chr3 1946352 1946352 0 0 Insertion 1 FN509-S Chr3 21010215 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr3 22196267 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr3 23707411 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr3 30215260 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN509-S Chr3 7038444 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr3 7038445 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr3 9007439 9007445 0 0 Deletion 6 LOC_Os03g16320 expressed protein FN509-S Chr4 10431609 10431621 0 0 Deletion 12 FN509-S Chr4 13051799 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g22990 retrotransposon protein, putative, unclassified, expressed FN509-S Chr4 13246538 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN509-S Chr4 13279728 A-T 0 0 Single Base Substitution 0 INTRON HET FN509-S Chr4 13950250 13950251 0 0 Deletion 1 LOC_Os04g24340 phytase, putative, expressed FN509-S Chr4 14013054 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os04g24430 sucrose synthase, putative, expressed FN509-S Chr4 14014238 19000349 0 0 Inversion 4986111 FN509-S Chr4 14329900 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g24860 retrotransposon protein, putative, unclassified, expressed FN509-S Chr4 19000335 19191788 0 0 Inversion 191453 LOC_Os04g32030 heavy metal-associated domain containing protein, expressed FN509-S Chr4 20933866 20933910 0 0 Deletion 44 FN509-S Chr4 2101959 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr4 3192493 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN509-S Chr4 4124944 4124944 0 0 Insertion 59 LOC_Os04g07760 retrotransposon protein, putative, unclassified, expressed FN509-S Chr5 11526661 11526670 0 0 Deletion 9 LOC_Os05g19750 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN509-S Chr5 12122345 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr5 16222311 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN509-S Chr5 22920966 A-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g39090 CAMK_CAMK_like.29 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN509-S Chr5 26902687 Chr3 16081925 0 Translocation 0 LOC_Os05g46430 60S ribosomal protein L28-1, putative, expressed FN509-S Chr5 29117705 29117707 0 0 Deletion 2 FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g07850 receptor-like kinase, putative, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g07860 uvrB/uvrC motif family protein, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g07870 triose phosphate/phosphate translocator, non-green plastid,chloroplast precursor, putative, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g07880 phospholipase D, putative, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g07890 embryo-specific 3, putative, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g07900 mitochondrial carrier protein, putative, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g07910 expressed protein FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g07920 transposon protein, putative, unclassified, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g07930 retrotransposon protein, putative, unclassified, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g07940 glyoxalase family protein, putative, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g07950 OsFBX160 - F-box domain containing protein, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g07960 F-box protein interaction domain containing protein, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g07970 transposon protein, putative, unclassified, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g07980 DUF630/DUF632 domains containing protein, putative, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g07990 expressed protein FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g08000 expressed protein FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g08010 OsFBX161 - F-box domain containing protein, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g08020 retrotransposon protein, putative, unclassified, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g08030 retrotransposon protein, putative, unclassified, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g08040 retrotransposon protein, putative, unclassified, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g08050 retrotransposon protein, putative, unclassified, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g08060 expressed protein FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g08070 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g08080 transposon protein, putative, unclassified, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g08090 expressed protein FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g08100 DNA replication licensing factor MCM3 homolog 3, putative, expressed FN509-S Chr5 4238001 4417000 0 0 Deletion 179000 LOC_Os05g08110 early light-induced protein, chloroplast precursor, putative, expressed FN509-S Chr6 11323855 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr6 11718 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g01030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN509-S Chr6 1242679 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN509-S Chr6 15295148 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os06g26140 retrotransposon protein, putative, Ty3-gypsy subclass FN509-S Chr6 1663588 1663610 0 0 Deletion 22 FN509-S Chr6 20856439 20856453 0 0 Deletion 14 FN509-S Chr6 21267118 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr6 23663999 23664000 0 0 Deletion 1 LOC_Os06g39840 retrotransposon protein, putative, unclassified, expressed FN509-S Chr6 4464678 4464678 0 0 Insertion 4 FN509-S Chr6 6959951 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN509-S Chr6 7046653 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN509-S Chr6 8495210 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g14980 retrotransposon protein, putative, Ty3-gypsy subclass FN509-S Chr7 11598160 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g19570 expressed protein FN509-S Chr7 14950484 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN509-S Chr7 15952991 15952993 0 0 Deletion 2 FN509-S Chr7 23366294 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr7 663464 663466 0 0 Deletion 2 FN509-S Chr7 7529539 7529539 0 0 Insertion 4 FN509-S Chr7 8388856 8388858 0 0 Deletion 2 FN509-S Chr7 9731008 9731009 0 0 Deletion 1 LOC_Os07g16590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN509-S Chr8 15504325 15504345 0 0 Deletion 20 FN509-S Chr8 18808807 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN509-S Chr8 19838640 Chr6 7023925 0 Translocation 0 FN509-S Chr8 21661599 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN509-S Chr8 3347906 3347906 0 0 Insertion 2 FN509-S Chr8 7565239 Chr6 15609190 0 Translocation 0 LOC_Os06g27580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN509-S Chr8 7997814 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr8 9191549 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN509-S Chr9 12257861 Chr1 3225642 0 Translocation 0 LOC_Os01g06790 disease resistance protein, putative, expressed FN509-S Chr9 12286177 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN509-S Chr9 12286179 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN509-S Chr9 18262261 18262261 0 0 Insertion 1 FN509-S Chr9 3460792 3460802 0 0 Deletion 10 FN509-S Chr9 4936522 G-T 0 0 Single Base Substitution 0 INTRON HET