FN540-S Chr1 1284803 1284812 0 0 Deletion 9 FN540-S Chr1 22518718 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN540-S Chr1 35610329 A-T 0 0 Single Base Substitution 0 INTRON HET FN540-S Chr1 8309609 8309617 0 0 Deletion 8 FN540-S Chr10 17125791 Chr1 41858998 0 Translocation 0 FN540-S Chr10 2044485 Chr4 12757392 0 Translocation 0 LOC_Os10g04342 stripe rust resistance protein Yr10, putative, expressed FN540-S Chr10 3025522 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN540-S Chr10 3025525 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN540-S Chr10 365002 365002 0 0 Insertion 1 FN540-S Chr10 9009080 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN540-S Chr11 15401602 Chr10 3537121 0 Translocation 0 FN540-S Chr11 17792706 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN540-S Chr11 1919998 19701706 0 0 Inversion 17781708 LOC_Os11g33310 OsFBX424 - F-box domain containing protein, expressed FN540-S Chr11 7144247 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN540-S Chr12 10167280 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN540-S Chr12 14970991 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN540-S Chr12 19358582 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g32090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32190 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32200 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32210 autophagy-related protein 10, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32230 molybdenum cofactor biosynthesis protein 1, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32240 eukaryotic translation initiation factor 5A, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32250 WRKY96, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32260 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32280 SWIB/MDM2 domain containing protein, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32284 glycine-rich protein, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32290 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32300 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32310 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32320 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32330 peroxisomal membrane protein, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32360 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32370 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32374 histone deacetylase 6, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32380 40S ribosomal protein S29, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32390 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32400 helix-loop-helix DNA-binding domain containing protein, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32410 retrotransposon protein, putative, unclassified FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32420 retrotransposon protein, putative, unclassified, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32430 retrotransposon protein, putative, unclassified, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32440 retrotransposon protein, putative, Ty1-copia subclass FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32450 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32470 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32480 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32499 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32520 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32530 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32536 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32544 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32560 retrotransposon protein, putative, unclassified, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32580 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32590 NB-ARC domain containing protein, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32600 hypothetical protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32610 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32620 OsWLIM1 - LIM domain protein, putative actin-binding protein and transcription factor, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32630 OsFBX448 - F-box domain containing protein, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32640 haemolysin-III, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32650 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32660 NB-ARC domain containing protein, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32670 CC-NBS-LRR resistance protein, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32680 NB-ARC domain containing protein, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32690 retrotransposon protein, putative, unclassified, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32700 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32710 NB-ARC domain containing protein, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32720 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32730 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32740 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32750 flavin monooxygenase, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32760 transporter family protein, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32770 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32790 disease resistance RPP13-like protein 1, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32810 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32814 pleiotropic drug resistance protein 3, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32820 pleiotropic drug resistance protein 3, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32840 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32850 cytochrome P450, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32870 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32880 plant protein of unknown function domain containing protein, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32900 plant protein of unknown function domain containing protein, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32910 hypothetical protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32920 plant protein of unknown function domain containing protein, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32930 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32940 transporter family protein, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32950 membrane protein, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32960 LTPL148 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32970 membrane associated DUF588 domain containing protein, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32980 potyvirus VPg interacting protein, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32986 heat shock protein, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g32992 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g33000 retrotransposon protein, putative, unclassified, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g33010 retrotransposon protein, putative, unclassified, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g33020 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g33030 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g33040 expressed protein FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g33050 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g33060 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g33070 myb-like DNA-binding domain containing protein, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g33080 2-oxoglutarate/malate translocator, chloroplast precursor, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g33090 zinc finger family protein, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g33100 guanylate kinase, putative, expressed FN540-S Chr12 19430001 20041000 0 0 Deletion 611000 LOC_Os12g33110 hypothetical protein FN540-S Chr12 19713529 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN540-S Chr12 19818834 Chr6 14832856 0 Translocation 0 LOC_Os06g25320 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN540-S Chr12 19818834 Chr6 14832856 0 Translocation 0 LOC_Os12g32800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN540-S Chr12 21843701 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN540-S Chr12 2184946 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN540-S Chr12 23055316 C-G 0 0 Single Base Substitution 0 INTRON HET FN540-S Chr12 23601066 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN540-S Chr12 3136969 3136970 0 0 Deletion 1 FN540-S Chr2 19427799 19427799 0 0 Insertion 6 FN540-S Chr2 24584662 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN540-S Chr2 25125213 25125213 0 0 Insertion 4 FN540-S Chr2 27684885 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN540-S Chr2 5347298 5347298 0 0 Insertion 3 FN540-S Chr2 7573579 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN540-S Chr3 12742801 12742801 0 0 Insertion 2 FN540-S Chr3 17283786 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN540-S Chr3 2185095 2188569 0 0 Deletion 3474 FN540-S Chr3 2185096 Chr2 27390056 0 Translocation 0 FN540-S Chr3 2188560 Chr2 27390049 0 Translocation 0 FN540-S Chr3 31442847 31442850 0 0 Deletion 3 LOC_Os03g55240 cytochrome P450, putative, expressed FN540-S Chr4 16416715 Chr1 32335247 0 Translocation 0 LOC_Os01g56150 OsProCP1 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed FN540-S Chr4 20459945 20459946 0 0 Deletion 1 FN540-S Chr4 22561798 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN540-S Chr4 34499168 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN540-S Chr5 10620996 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN540-S Chr5 27980629 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN540-S Chr5 28742986 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN540-S Chr5 5652870 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN540-S Chr6 12197671 12197672 0 0 Deletion 1 LOC_Os06g21120 expressed protein FN540-S Chr6 19441425 19441430 0 0 Deletion 5 FN540-S Chr6 23849915 23849933 0 0 Deletion 18 FN540-S Chr6 26149694 26149697 0 0 Deletion 3 FN540-S Chr6 27278468 27278530 0 0 Deletion 62 LOC_Os06g45100 FAD binding domain of DNA photolyase domain containing protein, expressed FN540-S Chr6 5724804 5724811 0 0 Deletion 7 LOC_Os06g10960 xyloglucan fucosyltransferase, putative, expressed FN540-S Chr7 15254393 15254400 0 0 Deletion 7 FN540-S Chr7 15980879 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g27420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN540-S Chr7 26011592 26015333 0 0 Deletion 3741 LOC_Os07g43450 expressed protein FN540-S Chr7 26011592 26015333 0 0 Deletion 3741 LOC_Os07g43460 sphingolipid C4-hydroxylase SUR2, putative, expressed FN540-S Chr8 15765020 Chr3 15248667 0 Translocation 0 LOC_Os03g26704 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN540-S Chr8 15765020 Chr3 15248667 0 Translocation 0 LOC_Os08g25880 retrotransposon protein, putative, unclassified, expressed FN540-S Chr8 1675233 G-T 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN540-S Chr8 21061456 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN540-S Chr8 21220339 21220340 0 0 Deletion 1 FN540-S Chr8 2994270 2994270 0 0 Insertion 2 FN540-S Chr8 5812799 5812802 0 0 Deletion 3 LOC_Os08g10030 KH domain-containing protein, putative, expressed FN540-S Chr8 6718519 6718520 0 0 Deletion 1 FN540-S Chr8 698939 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN540-S Chr8 9879119 10026706 0 0 Inversion 147587 FN540-S Chr9 20307243 20307266 0 0 Deletion 23 LOC_Os09g34847 expressed protein