FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22490 40S ribosomal protein S27a, putative, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22500 craniofacial development protein 1, putative, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22510 cyclase/dehydrase family protein, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22520 dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22530 expressed protein FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22540 expressed protein FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22550 galactosyltransferase family protein, putative, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22560 glycerol-3-phosphate acyltransferase 1, putative, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22570 glycerol-3-phosphate acyltransferase, putative, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22590 retrotransposon protein, putative, unclassified, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22600 mitochondrial carrier protein, putative, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22620 retrotransposon protein, putative, unclassified FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22630 ECT protein, putative, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22640 GDSL-like lipase/acylhydrolase, putative, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22650 expressed protein FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22660 GDSL-like lipase/acylhydrolase, putative, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22670 fruit bromelain precursor, putative, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22680 fruit bromelain precursor, putative, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22700 organic cation transporter-related, putative, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22710 organic cation transporter-related, putative, expressed FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22720 expressed protein FN543-S Chr1 12644001 12780000 0 0 Deletion 136000 LOC_Os01g22730 transposon protein, putative, unclassified, expressed FN543-S Chr1 16015598 16020883 0 0 Deletion 5285 LOC_Os01g28630 retrotransposon protein, putative, unclassified FN543-S Chr1 18140211 18140212 0 0 Deletion 1 FN543-S Chr1 20194816 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g36390 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed FN543-S Chr1 22977865 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr1 23057760 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g40810 retrotransposon protein, putative, unclassified, expressed FN543-S Chr1 23203403 23203411 0 0 Deletion 8 FN543-S Chr1 23670623 23675121 0 0 Deletion 4498 LOC_Os01g41810 cytochrome P450 72A1, putative, expressed FN543-S Chr1 29814892 34448233 0 0 Inversion 4633341 LOC_Os01g59570 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN543-S Chr1 34410174 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN543-S Chr1 37725889 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g64990 GPI transamidase subunit PIG-U domain containing protein, expressed FN543-S Chr1 40201222 40201236 0 0 Deletion 14 FN543-S Chr1 41947131 41947133 0 0 Deletion 2 FN543-S Chr10 10211551 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN543-S Chr10 3835638 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN543-S Chr11 14727703 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN543-S Chr11 1530614 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr11 1530615 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr11 19638385 Chr4 23729597 0 Translocation 0 LOC_Os04g39840 Os4bglu10 - beta-glucosidase homologue, similar to Os4Bglu12 exoglucanase/beta-glucosidase, expressed FN543-S Chr11 19638387 Chr4 23700637 0 Translocation 0 LOC_Os04g39780 AMP-binding enzyme family protein, expressed FN543-S Chr11 23480500 23480502 0 0 Deletion 2 FN543-S Chr11 24115647 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr12 19262944 19362108 0 0 Deletion 99164 LOC_Os12g31960 retrotransposon protein, putative, LINE subclass, expressed FN543-S Chr12 19262944 19362108 0 0 Deletion 99164 LOC_Os12g31980 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN543-S Chr12 19262944 19362108 0 0 Deletion 99164 LOC_Os12g31990 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN543-S Chr12 19262944 19362108 0 0 Deletion 99164 LOC_Os12g32000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN543-S Chr12 19262944 19362108 0 0 Deletion 99164 LOC_Os12g32010 expressed protein FN543-S Chr12 19262944 19362108 0 0 Deletion 99164 LOC_Os12g32020 expressed protein FN543-S Chr12 19262944 19362108 0 0 Deletion 99164 LOC_Os12g32030 expressed protein FN543-S Chr12 19262944 19362108 0 0 Deletion 99164 LOC_Os12g32040 ZmEBE-1 protein, putative, expressed FN543-S Chr12 19262944 19362108 0 0 Deletion 99164 LOC_Os12g32050 expressed protein FN543-S Chr12 19262944 19362108 0 0 Deletion 99164 LOC_Os12g32060 expressed protein FN543-S Chr12 19262944 19362108 0 0 Deletion 99164 LOC_Os12g32080 expressed protein FN543-S Chr12 19262944 19362108 0 0 Deletion 99164 LOC_Os12g32090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN543-S Chr12 25499049 Chr1 41499146 0 Translocation 0 FN543-S Chr12 3064927 3064928 0 0 Deletion 1 FN543-S Chr2 11552943 Chr1 23672182 0 Translocation 0 LOC_Os02g19750 NBS-LRR type disease resistance protein, putative, expressed FN543-S Chr2 11552950 Chr1 23670626 0 Translocation 0 LOC_Os02g19750 NBS-LRR type disease resistance protein, putative, expressed FN543-S Chr2 11638945 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr2 15108711 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr2 1866270 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr2 28081723 28081723 0 0 Insertion 2 LOC_Os02g46080 protein phosphatase 2C, putative, expressed FN543-S Chr2 30713959 30713961 0 0 Deletion 2 FN543-S Chr3 10061057 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr3 10224923 10224923 0 0 Insertion 2 LOC_Os03g18230 expressed protein FN543-S Chr3 17806924 17806938 0 0 Deletion 14 FN543-S Chr3 27431507 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN543-S Chr3 2766967 2766976 0 0 Deletion 9 FN543-S Chr3 29666302 29666303 0 0 Deletion 1 FN543-S Chr3 3032084 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr3 30990054 C-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN543-S Chr3 4031023 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr4 14097914 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr4 1748114 1748125 0 0 Deletion 11 FN543-S Chr4 6478341 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g11820 white-brown complex homolog protein, putative, expressed FN543-S Chr4 7247804 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr4 8338428 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr4 8683531 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr5 14050171 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN543-S Chr5 20720242 20720242 0 0 Insertion 1 FN543-S Chr5 26204153 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN543-S Chr6 10178722 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr6 14434436 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr6 15054009 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g25770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN543-S Chr6 16153380 Chr2 10936403 0 Translocation 0 LOC_Os02g18760 retrotransposon protein, putative, unclassified, expressed FN543-S Chr6 16153380 Chr2 10936403 0 Translocation 0 LOC_Os06g28390 retrotransposon protein, putative, unclassified, expressed FN543-S Chr6 19822057 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr6 20733539 25282498 0 0 Inversion 4548959 LOC_Os06g42090 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN543-S Chr6 2086377 2086388 0 0 Deletion 11 FN543-S Chr6 21171225 21171225 0 0 Insertion 1 LOC_Os06g36170 initiator tRNA phosphoribosyl transferase family protein, putative, expressed FN543-S Chr6 23188725 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g39060 glucan endo-1,3-beta-glucosidase precursor, putative, expressed FN543-S Chr6 26562729 26562756 0 0 Deletion 27 FN543-S Chr6 30497346 31120902 0 0 Inversion 623556 LOC_Os06g50380 protein phosphatase 2C, putative, expressed FN543-S Chr6 30497346 31120902 0 0 Inversion 623556 LOC_Os06g51380 ROOT HAIRLESS 1, putative, expressed FN543-S Chr6 31031001 31121000 0 0 Deletion 90000 LOC_Os06g51270 1,3-beta-glucan synthase component domain containing protein, expressed FN543-S Chr6 31031001 31121000 0 0 Deletion 90000 LOC_Os06g51280 acetolactate synthase 1, chloroplast precursor, putative, expressed FN543-S Chr6 31031001 31121000 0 0 Deletion 90000 LOC_Os06g51290 phytoene synthase, chloroplast precursor, putative, expressed FN543-S Chr6 31031001 31121000 0 0 Deletion 90000 LOC_Os06g51300 expressed protein FN543-S Chr6 31031001 31121000 0 0 Deletion 90000 LOC_Os06g51310 PAZ domain containing protein, putative, expressed FN543-S Chr6 31031001 31121000 0 0 Deletion 90000 LOC_Os06g51320 GASR8 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed FN543-S Chr6 31031001 31121000 0 0 Deletion 90000 LOC_Os06g51330 expressed protein FN543-S Chr6 31031001 31121000 0 0 Deletion 90000 LOC_Os06g51340 retrotransposon protein, putative, unclassified, expressed FN543-S Chr6 31031001 31121000 0 0 Deletion 90000 LOC_Os06g51350 IPP transferase, putative, expressed FN543-S Chr6 31031001 31121000 0 0 Deletion 90000 LOC_Os06g51360 lysM domain containing protein, putative, expressed FN543-S Chr6 31031001 31121000 0 0 Deletion 90000 LOC_Os06g51370 OsSCP38 - Putative Serine Carboxypeptidase homologue, expressed FN543-S Chr6 31031001 31121000 0 0 Deletion 90000 LOC_Os06g51380 ROOT HAIRLESS 1, putative, expressed FN543-S Chr6 5985021 5985023 0 0 Deletion 2 FN543-S Chr6 6202864 6202864 0 0 Insertion 2 FN543-S Chr7 8017003 8023711 0 0 Deletion 6708 LOC_Os07g14050 retrotransposon protein, putative, unclassified, expressed FN543-S Chr7 8017003 8023711 0 0 Deletion 6708 LOC_Os07g14060 retrotransposon protein, putative, unclassified, expressed FN543-S Chr7 8017003 8023711 0 0 Deletion 6708 LOC_Os07g14070 SCP-like extracellular protein, expressed FN543-S Chr8 14060406 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN543-S Chr8 15305729 A-G 0 0 Single Base Substitution 0 INTRON HET FN543-S Chr8 19992228 21023893 0 0 Inversion 1031665 FN543-S Chr8 20489729 20936931 0 0 Inversion 447202 FN543-S Chr8 20920353 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr8 20937001 21024000 0 0 Deletion 87000 LOC_Os08g33540 ATP-dependent Clp protease adaptor protein ClpS containing protein, expressed FN543-S Chr8 20937001 21024000 0 0 Deletion 87000 LOC_Os08g33550 transposon protein, putative, Mutator sub-class, expressed FN543-S Chr8 20937001 21024000 0 0 Deletion 87000 LOC_Os08g33560 retrotransposon protein, putative, unclassified, expressed FN543-S Chr8 20937001 21024000 0 0 Deletion 87000 LOC_Os08g33570 retrotransposon protein, putative, unclassified, expressed FN543-S Chr8 20937001 21024000 0 0 Deletion 87000 LOC_Os08g33580 zinc knuckle family protein, putative, expressed FN543-S Chr8 20937001 21024000 0 0 Deletion 87000 LOC_Os08g33590 basic helix-loop-helix, putative, expressed FN543-S Chr8 20937001 21024000 0 0 Deletion 87000 LOC_Os08g33600 retrotransposon protein, putative, unclassified, expressed FN543-S Chr8 20937001 21024000 0 0 Deletion 87000 LOC_Os08g33610 retrotransposon protein, putative, unclassified, expressed FN543-S Chr8 20937001 21024000 0 0 Deletion 87000 LOC_Os08g33620 arginine decarboxylase, putative, expressed FN543-S Chr8 20937001 21024000 0 0 Deletion 87000 LOC_Os08g33630 uncharacterized protein family UPF0016 domain containing protein, expressed FN543-S Chr8 20937001 21024000 0 0 Deletion 87000 LOC_Os08g33640 expressed protein FN543-S Chr8 20937001 21024000 0 0 Deletion 87000 LOC_Os08g33650 SET domain-containing protein, putative, expressed FN543-S Chr8 20937001 21024000 0 0 Deletion 87000 LOC_Os08g33660 MYB family transcription factor, putative, expressed FN543-S Chr8 22820963 22820977 0 0 Deletion 14 FN543-S Chr8 23797208 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN543-S Chr9 11265774 11265793 0 0 Deletion 19 LOC_Os09g18360 expressed protein FN543-S Chr9 11293830 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN543-S Chr9 13413001 13468000 0 0 Deletion 55000 LOC_Os09g22160 expressed protein FN543-S Chr9 13413001 13468000 0 0 Deletion 55000 LOC_Os09g22170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN543-S Chr9 13413001 13468000 0 0 Deletion 55000 LOC_Os09g22190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN543-S Chr9 13413001 13468000 0 0 Deletion 55000 LOC_Os09g22200 transposon protein, putative, CACTA, En/Spm sub-class FN543-S Chr9 13413001 13468000 0 0 Deletion 55000 LOC_Os09g22210 retrotransposon, putative, centromere-specific, expressed FN543-S Chr9 13413001 13468000 0 0 Deletion 55000 LOC_Os09g22220 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN543-S Chr9 13413001 13468000 0 0 Deletion 55000 LOC_Os09g22230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN543-S Chr9 13413001 13468000 0 0 Deletion 55000 LOC_Os09g22240 hypothetical protein FN543-S Chr9 13413001 13468000 0 0 Deletion 55000 LOC_Os09g22260 retrotransposon protein, putative, unclassified FN543-S Chr9 2126892 A-C 0 0 Single Base Substitution 0 INTRON HOMO FN543-S Chr9 8958194 Chr1 23675098 0 Translocation 0 LOC_Os01g41810 cytochrome P450 72A1, putative, expressed FN543-S Chr9 8958196 Chr1 23672195 0 Translocation 0