FN552-S Chr1 10990866 10990884 0 0 Deletion 18 LOC_Os01g19430 3-5 exonuclease domain-containing protein, putative, expressed FN552-S Chr1 15321121 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN552-S Chr1 32913977 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g56980 histidine acid phosphatase, putative, expressed FN552-S Chr1 4649043 4649055 0 0 Deletion 12 FN552-S Chr10 11118370 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN552-S Chr10 12407968 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN552-S Chr10 12437994 12437994 0 0 Insertion 1 FN552-S Chr10 21071398 21071399 0 0 Deletion 1 FN552-S Chr10 5900330 5900332 0 0 Deletion 2 FN552-S Chr11 10667584 G-A 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os11g18790 retrotransposon protein, putative, unclassified, expressed FN552-S Chr11 17850788 17850788 0 0 Insertion 1 FN552-S Chr11 6927454 Chr7 19968670 0 Translocation 0 LOC_Os11g12410 serpin domain containing protein, putative, expressed FN552-S Chr12 15721677 G-A 0 0 Single Base Substitution 0 INTRON HET FN552-S Chr12 22106686 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN552-S Chr12 25923464 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g41860 START domain containing protein, expressed FN552-S Chr12 25923465 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g41860 START domain containing protein, expressed FN552-S Chr2 16579031 16579034 0 0 Deletion 3 FN552-S Chr2 2086172 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN552-S Chr2 23510158 23510170 0 0 Deletion 12 FN552-S Chr2 23896021 C-A 0 0 Single Base Substitution 0 INTRON HET FN552-S Chr2 5887166 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN552-S Chr2 5887169 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN552-S Chr3 29934532 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN552-S Chr3 341241 341242 0 0 Deletion 1 LOC_Os03g01530 tubulin/FtsZ domain containing protein, putative, expressed FN552-S Chr3 35343984 35343990 0 0 Deletion 6 FN552-S Chr3 965832 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN552-S Chr4 11551033 Chr2 17320497 0 Translocation 0 FN552-S Chr4 31157438 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN552-S Chr4 34810564 34810565 0 0 Deletion 1 LOC_Os04g58550 acyl-CoA-binding domain-containing protein 6, putative, expressed FN552-S Chr4 6710422 A-T 0 0 Single Base Substitution 0 INTRON HET FN552-S Chr4 7358536 7358547 0 0 Deletion 11 FN552-S Chr4 9670374 9670377 0 0 Deletion 3 FN552-S Chr4 9844994 9844999 0 0 Deletion 5 LOC_Os04g17900 retrotransposon protein, putative, unclassified, expressed FN552-S Chr5 14449526 G-A 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN552-S Chr5 1778871 1778871 0 0 Insertion 3 FN552-S Chr5 21271121 21271122 0 0 Deletion 1 FN552-S Chr5 24398049 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g41700 retrotransposon protein, putative, unclassified, expressed FN552-S Chr5 24398050 C-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN552-S Chr5 24514493 24514496 0 0 Deletion 3 FN552-S Chr5 8010857 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN552-S Chr6 10774758 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g18950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN552-S Chr6 12307939 12307940 0 0 Deletion 1 FN552-S Chr6 22967305 22967314 0 0 Deletion 9 FN552-S Chr6 30352198 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN552-S Chr7 10906465 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os07g18430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN552-S Chr7 10953197 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN552-S Chr7 11629690 11629690 0 0 Insertion 14 LOC_Os07g20135 expressed protein FN552-S Chr7 16172683 16172684 0 0 Deletion 1 FN552-S Chr7 22322722 22322723 0 0 Deletion 1 FN552-S Chr7 2253924 2253925 0 0 Deletion 1 FN552-S Chr7 26227125 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05600 retrotransposon protein, putative, unclassified, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05610 zinc ion binding protein, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05620 CAMK_KIN1/SNF1/Nim1_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05630 OsGrx_C10 - glutaredoxin subgroup III, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05640 transporter family protein, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05650 MAGE-8 antigen-related, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05660 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05670 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05680 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05690 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05700 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05710 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05720 TCP family transcription factor, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05740 receptor-like protein kinase 2 precursor, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05760 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05770 transposon protein, putative, unclassified, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05780 conserved hypothetical protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05790 retrotransposon protein, putative, unclassified, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05800 glutathione S-transferase, N-terminal domain containing protein, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05810 glycine-rich protein, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05820 hydroxyacid oxidase 1, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05830 zinc-finger protein, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05840 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05850 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05870 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05880 OsFBK18 - F-box domain and kelch repeat containing protein, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05890 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05900 ZOS7-02 - C2H2 zinc finger protein, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05910 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05920 retrotransposon protein, putative, unclassified FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05930 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05940 9-cis-epoxycarotenoid dioxygenase 1, chloroplast precursor, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05950 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05960 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05970 ligA, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g05984 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06010 transposon protein, putative, unclassified FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06030 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06040 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06050 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06060 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06070 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06080 FAD dependent oxidoreductase domain containing protein, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06090 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06100 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06130 ethylene-insensitive protein, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06166 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06175 peroxidase precursor, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06190 ethylene-insensitive protein 2, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06199 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06210 retrotransposon protein, putative, unclassified FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06220 hypothetical protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06230 hypothetical protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06240 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06250 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06262 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06274 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06300 ethylene-insensitive protein 2, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06315 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06325 retrotransposon protein, putative, unclassified FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06335 hypothetical protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06345 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06355 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06380 peroxidase precursor, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06390 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06400 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06410 deoxyribonuclease tatD, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06420 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06430 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06440 deoxyribonuclease tatD, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06450 RNA recognition motif containing protein, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06460 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06470 nuclear transcription factor Y subunit, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06490 DNA binding protein, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06500 OsFBL34 - F-box domain and LRR containing protein, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06510 transposon protein, putative, unclassified FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06530 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06540 zinc finger, C3HC4 type domain containing protein, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06550 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06560 zinc finger, C3HC4 type domain containing protein, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06570 receptor protein kinase CRINKLY4 precursor, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06580 hypothetical protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06590 ML domain protein, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06600 glutaredoxin, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06610 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06620 YABBY domain containing protein, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06630 retrotransposon protein, putative, unclassified, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06644 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06660 glyoxalase family protein, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06670 OsFBL35 - F-box domain and LRR containing protein, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06680 fasciclin domain containing protein, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06700 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06710 tetratricopeptide repeat, putative, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06720 expressed protein FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06730 OsFBX216 - F-box domain containing protein, expressed FN552-S Chr7 2629001 3292000 0 0 Deletion 663000 LOC_Os07g06740 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed FN552-S Chr7 6058722 6949544 0 0 Inversion 890822 LOC_Os07g11010 protein Kinase-associated protein phosphatase, putative, expressed FN552-S Chr7 6058735 6700741 0 0 Inversion 642006 LOC_Os07g11010 protein Kinase-associated protein phosphatase, putative, expressed FN552-S Chr7 6960847 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN552-S Chr7 6961529 6961530 0 0 Deletion 1 FN552-S Chr7 9385948 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN552-S Chr7 98242 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN552-S Chr8 1095745 1095748 0 0 Deletion 3 FN552-S Chr8 16362992 Chr4 18299491 0 Translocation 0 FN552-S Chr8 23146456 23146457 0 0 Deletion 1 FN552-S Chr8 26662131 26662144 0 0 Deletion 13 FN552-S Chr8 27108401 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN552-S Chr8 4399717 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g07840 PolI-like DNA polymerase, putative, expressed FN552-S Chr9 16235630 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN552-S Chr9 22313733 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN552-S Chr9 4679934 4679936 0 0 Deletion 2 FN552-S Chr9 9236679 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO