FN567-1-3 Chr1 16892612 16892613 0 0 Deletion 1 downstream_gene_variant HET FN567-1-3 Chr1 20461861 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN567-1-3 Chr1 37374336 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN567-1-3 Chr1 40246726 40246727 0 0 Deletion 1 downstream_gene_variant HET FN567-1-3 Chr1 5481309 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN567-1-3 Chr1 7487560 7487562 0 0 Deletion 2 INTERGENIC HOMO FN567-1-3 Chr10 106997 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN567-1-3 Chr10 18197321 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN567-1-3 Chr10 22945744 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN567-1-3 Chr11 15714483 Chr8 18521709 0 Translocation 0 LOC_Os11g27329 OsSCP62 - Putative Serine Carboxypeptidase homologue, expressed FN567-1-3 Chr11 15959790 C-T 0 0 Single Base Substitution 0 INTRON HET FN567-1-3 Chr11 20956254 20956255 0 0 Deletion 1 INTRON HET FN567-1-3 Chr11 28772598 Chr1 16059626 0 Translocation 0 FN567-1-3 Chr12 18436529 T-C 0 0 Single Base Substitution 0 INTRON HET FN567-1-3 Chr12 9139313 C-T 0 0 Single Base Substitution 0 INTRON HET FN567-1-3 Chr2 11284662 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN567-1-3 Chr2 3631895 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN567-1-3 Chr3 19320467 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g33810 retrotransposon protein, putative, unclassified, expressed FN567-1-3 Chr3 30199970 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN567-1-3 Chr3 35500920 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g62730 transposon protein, putative, unclassified, expressed FN567-1-3 Chr4 11914138 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN567-1-3 Chr4 12356631 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN567-1-3 Chr4 23232086 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g39090 SAM domain containing protein, putative, expressed FN567-1-3 Chr4 23314522 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN567-1-3 Chr4 2695668 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN567-1-3 Chr4 3018376 3018379 0 0 Deletion 3 upstream_gene_variant HET FN567-1-3 Chr5 13122219 13122258 0 0 Deletion 39 downstream_gene_variant HET FN567-1-3 Chr5 28462685 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN567-1-3 Chr5 9595657 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN567-1-3 Chr6 11796320 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN567-1-3 Chr6 11831212 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN567-1-3 Chr6 24589600 24589600 0 0 Insertion 2 INTERGENIC HET FN567-1-3 Chr6 6873307 6873309 0 0 Deletion 2 downstream_gene_variant HET FN567-1-3 Chr6 7638013 7638018 0 0 Deletion 5 upstream_gene_variant HET FN567-1-3 Chr7 18163684 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN567-1-3 Chr7 18705711 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN567-1-3 Chr7 18862161 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN567-1-3 Chr7 20723948 20723952 0 0 Deletion 4 INTERGENIC HET FN567-1-3 Chr7 22749699 C-A 0 0 Single Base Substitution 0 INTRON HET FN567-1-3 Chr7 635666 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN567-1-3 Chr7 7786268 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN567-1-3 Chr7 8953433 Chr4 11550325 0 Translocation 0 FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16490 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16500 retrotransposon, putative, centromere-specific FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16510 retrotransposon, putative, centromere-specific, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16520 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16530 retrotransposon protein, putative, unclassified, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16540 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16550 transposon protein, putative, unclassified FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16560 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16580 retrotransposon protein, putative, Ty3-gypsy subclass FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16600 expressed protein FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16610 retrotransposon protein, putative, Ty1-copia subclass, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16620 retrotransposon protein, putative, Ty1-copia subclass, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16630 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16640 retrotransposon protein, putative, unclassified FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16660 retrotransposon protein, putative, unclassified, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16670 retrotransposon protein, putative, unclassified FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16680 retrotransposon protein, putative, Ty1-copia subclass FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16700 retrotransposon protein, putative, Ty3-gypsy subclass FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16710 retrotransposon protein, putative, Ty3-gypsy subclass FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16730 retrotransposon protein, putative, Ty1-copia subclass FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16740 expressed protein FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16750 retrotransposon protein, putative, unclassified, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16760 expressed protein FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16780 retrotransposon protein, putative, Ty3-gypsy subclass FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16790 expressed protein FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16800 OsFBX233 - F-box domain containing protein, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g16810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN567-1-3 Chr7 9658001 9865000 0 0 Deletion 206999 LOC_Os07g18640 retrotransposon protein, putative, unclassified FN567-1-3 Chr7 9847261 9847261 0 0 Insertion 1 upstream_gene_variant HET FN567-1-3 Chr8 1138549 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN567-1-3 Chr8 14223520 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN567-1-3 Chr8 16361552 Chr7 8882904 0 Translocation 0 FN567-1-3 Chr8 18755438 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN567-1-3 Chr8 3882735 C-T 0 0 Single Base Substitution 0 INTRON HET FN567-1-3 Chr8 6620727 C-T 0 0 Single Base Substitution 0 INTRON HET FN567-1-3 Chr9 12109537 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN567-1-3 Chr9 13712369 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN567-1-3 Chr9 17403961 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN567-1-3 Chr9 225576 225576 0 0 Insertion 3 downstream_gene_variant HET FN567-1-3 Chr9 4057609 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN567-1-3 Chr9 5298719 5298719 0 0 Insertion 1 upstream_gene_variant HET FN567-1-3 Chr9 6039976 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO