FN662-S Chr1 12758428 12758434 0 0 Deletion 6 FN662-S Chr1 18473218 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN662-S Chr1 24828646 24828664 0 0 Deletion 18 FN662-S Chr1 4264769 T-C 0 0 Single Base Substitution 0 INTRON HET FN662-S Chr1 7665600 7665601 0 0 Deletion 1 FN662-S Chr10 19776326 19777199 0 0 Deletion 873 LOC_Os10g36900 expressed protein FN662-S Chr11 12870979 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g22420 retrotransposon, putative, centromere-specific, expressed FN662-S Chr11 13006358 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN662-S Chr11 429498 429509 0 0 Deletion 11 FN662-S Chr11 5860938 5860939 0 0 Deletion 1 FN662-S Chr12 13394797 Chr3 35423623 0 Translocation 0 FN662-S Chr12 21983057 Chr5 12725491 0 Translocation 0 FN662-S Chr12 4726253 Chr9 18723075 0 Translocation 0 FN662-S Chr12 5444431 5444432 0 0 Deletion 1 LOC_Os12g10310 retrotransposon protein, putative, Ty1-copia subclass, expressed FN662-S Chr12 8809722 8809722 0 0 Insertion 1 FN662-S Chr12 9229302 9229306 0 0 Deletion 4 FN662-S Chr2 10782171 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN662-S Chr2 11795839 G-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os02g20030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN662-S Chr2 15932996 16324519 0 0 Inversion 391523 LOC_Os02g27110 expressed protein FN662-S Chr2 15932996 16324519 0 0 Inversion 391523 LOC_Os02g27570 retrotransposon protein, putative, unclassified, expressed FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27110 expressed protein FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27120 retrotransposon protein, putative, LINE subclass, expressed FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27130 expressed protein FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27140 expressed protein FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27150 expressed protein FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27160 retrotransposon protein, putative, unclassified, expressed FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27170 hypothetical protein FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27180 retrotransposon, putative, centromere-specific, expressed FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27190 expressed protein FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27200 expressed protein FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27210 hypothetical protein FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27220 protein phosphatase 2C, putative, expressed FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27230 retrotransposon protein, putative, unclassified, expressed FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27240 retrotransposon protein, putative, unclassified, expressed FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27250 expressed protein FN662-S Chr2 15933001 16048000 0 0 Deletion 115000 LOC_Os02g27260 hypothetical protein FN662-S Chr2 16093727 16324523 0 0 Inversion 230796 LOC_Os02g27310 TKL_IRAK_DUF26-lc.6 - DUF26 kinases have homology to DUF26 containing loci, expressed FN662-S Chr2 16093727 16324523 0 0 Inversion 230796 LOC_Os02g27570 retrotransposon protein, putative, unclassified, expressed FN662-S Chr2 21165831 21165842 0 0 Deletion 11 FN662-S Chr2 4332110 4332116 0 0 Deletion 6 FN662-S Chr3 11325068 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN662-S Chr3 19185932 19185933 0 0 Deletion 1 FN662-S Chr3 20867162 23517709 0 0 Inversion 2650547 LOC_Os03g37630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN662-S Chr3 20867162 23517709 0 0 Inversion 2650547 LOC_Os03g42270 retrotransposon protein, putative, unclassified, expressed FN662-S Chr3 23871807 24475557 0 0 Inversion 603750 LOC_Os03g42830 MATE efflux family protein, putative, expressed FN662-S Chr3 23872001 23916000 0 0 Deletion 44000 LOC_Os03g42830 MATE efflux family protein, putative, expressed FN662-S Chr3 23872001 23916000 0 0 Deletion 44000 LOC_Os03g42840 calcineurin B, putative, expressed FN662-S Chr3 23872001 23916000 0 0 Deletion 44000 LOC_Os03g42850 expressed protein FN662-S Chr3 23872001 23916000 0 0 Deletion 44000 LOC_Os03g42860 pentatricopeptide, putative, expressed FN662-S Chr3 23872001 23916000 0 0 Deletion 44000 LOC_Os03g42870 hypothetical protein FN662-S Chr3 23872001 23916000 0 0 Deletion 44000 LOC_Os03g42880 nucleotide-binding protein-like, putative, expressed FN662-S Chr3 23872001 23916000 0 0 Deletion 44000 LOC_Os03g42890 retrotransposon protein, putative, unclassified, expressed FN662-S Chr3 24475507 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN662-S Chr3 24475562 29136073 0 0 Inversion 4660511 FN662-S Chr3 26210440 26210442 0 0 Deletion 2 FN662-S Chr3 29085447 Chr2 16047694 0 Translocation 0 LOC_Os02g27260 hypothetical protein FN662-S Chr3 29101449 29101449 0 0 Tandem-Duplication 0 LOC_Os03g50940 cytochrome c oxidase assembly protein COX11, mitochondrial precursor, putative, expressed FN662-S Chr3 9239304 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN662-S Chr4 28442261 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN662-S Chr5 20828193 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN662-S Chr5 8953739 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g15860 retrotransposon protein, putative, unclassified, expressed FN662-S Chr6 10879356 10879357 0 0 Deletion 1 FN662-S Chr6 12539502 12539505 0 0 Deletion 3 FN662-S Chr6 2495282 2495291 0 0 Deletion 9 FN662-S Chr6 25173438 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN662-S Chr6 6065765 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN662-S Chr7 12516722 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN662-S Chr7 20896348 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN662-S Chr7 27801052 27801097 0 0 Deletion 45 FN662-S Chr7 9592391 C-G 0 0 Single Base Substitution 0 INTRON HOMO FN662-S Chr8 1096038 1096039 0 0 Deletion 1 FN662-S Chr8 12558206 12558207 0 0 Deletion 1 LOC_Os08g20967 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN662-S Chr8 1433231 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g03130 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN662-S Chr8 2040508 2040512 0 0 Deletion 4 FN662-S Chr8 21150875 21150878 0 0 Deletion 3 FN662-S Chr8 5311826 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g09160 retrotransposon protein, putative, unclassified, expressed FN662-S Chr9 14150143 14150144 0 0 Deletion 1