FN689-S Chr1 20067937 20067938 0 0 Deletion 1 FN689-S Chr1 20069633 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN689-S Chr1 21278608 21278611 0 0 Deletion 3 LOC_Os01g37980 vesicle transport v-SNARE protein, putative, expressed FN689-S Chr1 24053292 24053300 0 0 Deletion 8 LOC_Os01g42350 pleiotropic drug resistance protein, putative, expressed FN689-S Chr1 28833828 28833829 0 0 Deletion 1 FN689-S Chr1 35271268 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN689-S Chr1 6375782 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN689-S Chr10 15648001 15717000 0 0 Deletion 69000 LOC_Os10g30120 laccase-9 precursor, putative FN689-S Chr10 15648001 15717000 0 0 Deletion 69000 LOC_Os10g30130 retrotransposon protein, putative, unclassified, expressed FN689-S Chr10 15648001 15717000 0 0 Deletion 69000 LOC_Os10g30140 laccase-16, putative, expressed FN689-S Chr10 15648001 15717000 0 0 Deletion 69000 LOC_Os10g30150 universal stress protein domain containing protein, putative, expressed FN689-S Chr10 15648001 15717000 0 0 Deletion 69000 LOC_Os10g30156 starch synthase, putative, expressed FN689-S Chr10 15648001 15717000 0 0 Deletion 69000 LOC_Os10g30162 hsp20/alpha crystallin family protein, putative, expressed FN689-S Chr10 15648001 15717000 0 0 Deletion 69000 LOC_Os10g30170 expressed protein FN689-S Chr10 15648001 15717000 0 0 Deletion 69000 LOC_Os10g30180 hsp20/alpha crystallin family protein, putative, expressed FN689-S Chr10 15648001 15717000 0 0 Deletion 69000 LOC_Os10g30190 BTBP2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with pentapeptide repeats, expressed FN689-S Chr10 15648001 15717000 0 0 Deletion 69000 LOC_Os10g30200 SKP1-like protein 1B, putative, expressed FN689-S Chr10 15648001 15717000 0 0 Deletion 69000 LOC_Os10g30210 expressed protein FN689-S Chr10 15648001 15717000 0 0 Deletion 69000 LOC_Os10g30220 expressed protein FN689-S Chr10 15648001 15717000 0 0 Deletion 69000 LOC_Os10g30230 expressed protein FN689-S Chr10 15648001 15717000 0 0 Deletion 69000 LOC_Os10g30240 expressed protein FN689-S Chr10 15648001 15717000 0 0 Deletion 69000 LOC_Os10g30250 transposon protein, putative, unclassified, expressed FN689-S Chr10 1629306 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN689-S Chr10 21815530 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN689-S Chr10 21909489 21909507 0 0 Deletion 18 FN689-S Chr10 2938924 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g05810 transposon protein, putative, Mutator sub-class, expressed FN689-S Chr10 3023243 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN689-S Chr11 10011566 10011573 0 0 Deletion 7 FN689-S Chr11 2067619 2067627 0 0 Deletion 8 FN689-S Chr11 20814605 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN689-S Chr11 21018611 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN689-S Chr11 21018612 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g35810 expressed protein FN689-S Chr11 22162746 22162752 0 0 Deletion 6 FN689-S Chr11 23819319 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN689-S Chr11 24574518 24574518 0 0 Insertion 2 FN689-S Chr11 2959153 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN689-S Chr11 2959154 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN689-S Chr11 3245359 3245363 0 0 Deletion 4 FN689-S Chr11 822541 Chr4 16367930 0 Translocation 0 LOC_Os11g02600 OsMan08 - Endo-Beta-Mannanase, expressed FN689-S Chr12 13556360 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os12g23840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN689-S Chr2 10697770 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN689-S Chr2 10697772 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN689-S Chr2 12550646 12550646 0 0 Insertion 1 FN689-S Chr2 13150437 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN689-S Chr2 25470146 25470148 0 0 Deletion 2 FN689-S Chr3 10655855 10655866 0 0 Deletion 11 FN689-S Chr4 11939803 11939803 0 0 Insertion 1 FN689-S Chr4 19258207 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN689-S Chr4 26196729 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN689-S Chr4 27524873 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN689-S Chr4 3053521 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g05900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN689-S Chr4 3555832 3555833 0 0 Deletion 1 LOC_Os04g06770 argonaute, putative, expressed FN689-S Chr4 4177960 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN689-S Chr5 7510813 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN689-S Chr6 11607181 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN689-S Chr6 13357702 13357710 0 0 Deletion 8 FN689-S Chr6 17105895 17105937 0 0 Deletion 42 LOC_Os06g29770 hypothetical protein FN689-S Chr6 29485257 29485258 0 0 Deletion 1 FN689-S Chr6 29516187 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN689-S Chr6 30941245 30941245 0 0 Insertion 1 FN689-S Chr6 4985635 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN689-S Chr6 9748522 9748531 0 0 Deletion 9 FN689-S Chr7 1774804 1774805 0 0 Deletion 1 FN689-S Chr7 23664273 23664274 0 0 Deletion 1 FN689-S Chr7 3566169 3566237 0 0 Deletion 68 LOC_Os07g07194 MAC/Perforin domain containing protein, putative, expressed FN689-S Chr8 14247548 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN689-S Chr8 17687571 17687583 0 0 Deletion 12 FN689-S Chr8 18419223 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN689-S Chr8 3727296 3727304 0 0 Deletion 8 FN689-S Chr9 10267558 11387095 0 0 Inversion 1119537 FN689-S Chr9 10288001 10288029 0 0 Deletion 28 LOC_Os09g16850 A3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17840 protein transport protein Sec61 subunit alpha, putative, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17850 acetyltransferase type B catalytic subunit, putative, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17860 retrotransposon protein, putative, unclassified, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17870 cytidylyltransferase domain containing protein, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17880 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17890 expressed protein FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17900 expressed protein FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17910 expressed protein FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17920 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17930 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17940 expressed protein FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17950 retrotransposon protein, putative, unclassified FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17960 retrotransposon protein, putative, unclassified FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17970 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17980 expressed protein FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g17990 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18000 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18010 expressed protein FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18020 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18040 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18050 expressed protein FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18060 hypothetical protein FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18070 conserved hypothetical protein FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18080 retrotransposon protein, putative, Ty1-copia subclass, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18090 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18100 retrotransposon protein, putative, Ty3-gypsy subclass FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18110 retrotransposon protein, putative, unclassified, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18120 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18130 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18159 light repressible receptor protein kinase, putative, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18190 hypothetical protein FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18200 retrotransposon protein, putative, unclassified, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18210 transposon protein, putative, CACTA, En/Spm sub-class FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18220 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN689-S Chr9 10912134 11184766 0 0 Deletion 272632 LOC_Os09g18230 expressed protein FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18240 retrotransposon protein, putative, unclassified, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18250 expressed protein FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18260 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18270 transposon protein, putative, CACTA, En/Spm sub-class FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18280 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18290 hypothetical protein FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18300 hypothetical protein FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18310 retrotransposon protein, putative, unclassified FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18320 bystin, putative, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18330 expressed protein FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18340 transposon protein, putative, unclassified, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18350 retrotransposon protein, putative, unclassified, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18360 expressed protein FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18370 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18380 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18390 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18400 expressed protein FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18410 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18420 hypothetical protein FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18430 transposon protein, putative, Pong sub-class, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18440 transposon protein, putative, Pong sub-class, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18450 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18460 hypothetical protein FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18470 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18480 retrotransposon protein, putative, unclassified, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18490 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18520 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18530 nodulation receptor kinase precursor, putative, expressed FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18540 expressed protein FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18560 expressed protein FN689-S Chr9 11184758 11387093 0 0 Deletion 202335 LOC_Os09g18580 retrotransposon protein, putative, unclassified FN689-S Chr9 11341555 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g18500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN689-S Chr9 11341557 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g18500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN689-S Chr9 11341559 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g18500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN689-S Chr9 13571830 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN689-S Chr9 14441917 14441918 0 0 Deletion 1 FN689-S Chr9 15862793 15862797 0 0 Deletion 4 LOC_Os09g26250 expressed protein FN689-S Chr9 17972799 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN689-S Chr9 9374766 10912180 0 0 Inversion 1537414