FN727-S Chr1 19870684 19870689 0 0 Deletion 5 FN727-S Chr1 21197418 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN727-S Chr1 21254395 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g37940 retrotransposon protein, putative, unclassified, expressed FN727-S Chr1 22345146 22345150 0 0 Deletion 4 FN727-S Chr1 23672359 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN727-S Chr1 25969617 25969619 0 0 Deletion 2 FN727-S Chr1 26164279 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN727-S Chr1 27335697 27335697 0 0 Insertion 1 FN727-S Chr1 6041724 6041725 0 0 Deletion 1 FN727-S Chr10 538124 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN727-S Chr10 6702080 G-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN727-S Chr11 22354080 22354082 0 0 Deletion 2 LOC_Os11g37774 stripe rust resistance protein Yr10, putative, expressed FN727-S Chr11 22392822 22392823 0 0 Deletion 1 FN727-S Chr11 26439637 27397963 0 0 Inversion 958326 LOC_Os11g43760 lipase class 3 family protein, putative, expressed FN727-S Chr11 9771770 9771782 0 0 Deletion 12 LOC_Os11g17530 pentatricopeptide, putative, expressed FN727-S Chr12 2030426 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g04770 expressed protein FN727-S Chr12 23628769 23628783 0 0 Deletion 14 FN727-S Chr12 4011765 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN727-S Chr12 7213773 7213797 0 0 Deletion 24 LOC_Os12g13010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN727-S Chr12 7838846 7838846 0 0 Insertion 10 FN727-S Chr12 8925564 8925571 0 0 Deletion 7 FN727-S Chr2 13150451 13150459 0 0 Deletion 8 FN727-S Chr2 1557705 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN727-S Chr2 31306241 G-A 0 0 Single Base Substitution 0 INTRON HET FN727-S Chr2 31310001 31384000 0 0 Deletion 74000 LOC_Os02g51180 cullin, putative, expressed FN727-S Chr2 31310001 31384000 0 0 Deletion 74000 LOC_Os02g51190 retrotransposon protein, putative, unclassified, expressed FN727-S Chr2 31310001 31384000 0 0 Deletion 74000 LOC_Os02g51200 retrotransposon protein, putative, LINE subclass, expressed FN727-S Chr2 31310001 31384000 0 0 Deletion 74000 LOC_Os02g51210 expressed protein FN727-S Chr2 31310001 31384000 0 0 Deletion 74000 LOC_Os02g51220 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN727-S Chr2 31310001 31384000 0 0 Deletion 74000 LOC_Os02g51230 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN727-S Chr2 31310001 31384000 0 0 Deletion 74000 LOC_Os02g51240 retrotransposon protein, putative, unclassified FN727-S Chr2 31310001 31384000 0 0 Deletion 74000 LOC_Os02g51250 retrotransposon protein, putative, unclassified FN727-S Chr2 31961111 G-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN727-S Chr2 32166024 32166027 0 0 Deletion 3 FN727-S Chr2 33429105 33429106 0 0 Deletion 1 FN727-S Chr2 5892839 5892842 0 0 Deletion 3 FN727-S Chr2 5995043 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32650 transposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32660 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32664 retrotransposon protein, putative, unclassified FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32670 expressed protein FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32690 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32700 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32720 retrotransposon protein, putative, unclassified FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32730 retrotransposon protein, putative, unclassified FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32749 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32770 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32780 expressed protein FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32790 expressed protein FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32810 retrotransposon, putative, centromere-specific, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32820 retrotransposon protein, putative, Ty3-gypsy subclass FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32830 hypothetical protein FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32840 retrotransposon protein, putative, unclassified FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32850 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32860 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32870 retrotransposon protein, putative, unclassified FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32880 retrotransposon protein, putative, unclassified FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32890 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32900 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32910 retrotransposon protein, putative, unclassified FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32920 retrotransposon protein, putative, Ty3-gypsy subclass FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32940 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32970 retrotransposon protein, putative, unclassified FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32980 expressed protein FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g32990 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33000 retrotransposon, putative, centromere-specific FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33010 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33012 WRKY81, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33030 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33040 retrotransposon protein, putative, unclassified FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33042 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33044 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33050 retrotransposon protein, putative, unclassified FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33060 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33070 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33074 hypothetical protein FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33080 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33090 DUF260 domain containing protein, putative, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33100 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33110 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33130 retrotransposon protein, putative, Ty3-gypsy subclass FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33150 transposon protein, putative, unclassified FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33160 retrotransposon protein, putative, unclassified FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33172 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33177 retrotransposon protein, putative, unclassified FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33190 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33200 expressed protein FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33220 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33230 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33240 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33250 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33260 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33270 retrotransposon protein, putative, unclassified FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33280 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33290 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33300 retrotransposon, putative, centromere-specific, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33310 retrotransposon, putative, centromere-specific, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33319 retrotransposon protein, putative, unclassified FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33328 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33340 retrotransposon protein, putative, Ty3-gypsy subclass FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33360 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33370 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33380 retrotransposon, putative, centromere-specific, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33384 hypothetical protein FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33390 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33400 expressed protein FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33430 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33450 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33460 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33480 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33490 hypothetical protein FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33500 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33509 expressed protein FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33520 exo70 exocyst complex subunit, putative, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33530 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33540 retrotransposon protein, putative, Ty3-gypsy subclass FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33550 hypothetical protein FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33570 calcineurin B-like protein 8, putative, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33580 mitotic checkpoint protein, putative, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33590 interferon-related developmental regulator, putative, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33600 retrotransposon, putative, centromere-specific, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33610 retrotransposon, putative, centromere-specific, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33620 retrotransposon protein, putative, Ty3-gypsy subclass FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33640 retrotransposon protein, putative, Ty1-copia subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33650 AGO7, putative, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33660 expressed protein FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33670 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33690 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33700 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33710 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33720 retrotransposon protein, putative, Ty3-gypsy subclass FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33730 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33750 retrotransposon protein, putative, LINE subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33760 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33770 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33790 retrotransposon protein, putative, unclassified, expressed FN727-S Chr3 18698001 19319000 0 0 Deletion 621000 LOC_Os03g33800 expressed protein FN727-S Chr3 20200402 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN727-S Chr3 22018993 T-C 0 0 Single Base Substitution 0 INTRON HET FN727-S Chr3 22018996 C-A 0 0 Single Base Substitution 0 INTRON HET FN727-S Chr3 34805467 Chr1 17588522 0 Translocation 0 LOC_Os03g61290 ATCHX, putative, expressed FN727-S Chr4 10610798 10610815 0 0 Deletion 17 FN727-S Chr4 11787023 G-T 0 0 Single Base Substitution 0 INTRON HOMO FN727-S Chr4 12455969 12455977 0 0 Deletion 8 LOC_Os04g22000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN727-S Chr4 18551794 18551795 0 0 Deletion 1 LOC_Os04g31040 violaxanthin de-epoxidase, putative, expressed FN727-S Chr4 24689423 24689432 0 0 Deletion 9 FN727-S Chr4 24822094 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN727-S Chr4 27415322 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN727-S Chr4 32294151 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN727-S Chr4 32401198 32401365 0 0 Deletion 167 FN727-S Chr4 32401212 Chr3 7966832 0 Translocation 0 FN727-S Chr4 32401356 Chr3 7959411 0 Translocation 0 LOC_Os03g14642 LTPL107 - Protease inhibitor/seed storage/LTP family protein precursor, expressed FN727-S Chr4 33102799 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN727-S Chr4 997175 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN727-S Chr5 175409 C-A 0 0 Single Base Substitution 0 INTRON HET FN727-S Chr6 11010267 Chr4 11633867 0 Translocation 0 LOC_Os06g19350 retrotransposon, putative, centromere-specific, expressed FN727-S Chr6 8335366 8335394 0 0 Deletion 28 FN727-S Chr6 9588591 9588600 0 0 Deletion 9 FN727-S Chr7 21530462 21530467 0 0 Deletion 5 FN727-S Chr7 9205525 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN727-S Chr7 9520781 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN727-S Chr8 12450453 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN727-S Chr8 12647656 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN727-S Chr8 16206869 16206880 0 0 Deletion 11 FN727-S Chr8 2659571 G-C 0 0 Single Base Substitution 0 INTRON HOMO FN727-S Chr8 8049233 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN727-S Chr9 1170620 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN727-S Chr9 19723218 Chr1 23364559 0 Translocation 0 LOC_Os01g41290 OsFBD5 - F-box and FBD domain containing protein, expressed