FN829-S Chr1 17315952 A-G 0 0 Single Base Substitution 0 INTRON HET FN829-S Chr1 22731681 22731681 0 0 Insertion 1 FN829-S Chr1 35677891 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g61660 retrotransposon protein, putative, unclassified, expressed FN829-S Chr1 36396299 C-T 0 0 Single Base Substitution 0 INTRON HET FN829-S Chr1 8127267 8127268 0 0 Deletion 1 LOC_Os01g14510 BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed FN829-S Chr10 22805012 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g42364 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN829-S Chr10 2990366 3024958 0 0 Inversion 34592 FN829-S Chr10 4542399 4542419 0 0 Deletion 20 FN829-S Chr10 7448939 7448940 0 0 Deletion 1 FN829-S Chr11 12649052 12649053 0 0 Deletion 1 FN829-S Chr11 15315918 15315923 0 0 Deletion 5 FN829-S Chr11 19197001 19292000 0 0 Deletion 95000 LOC_Os11g32530 retrotransposon protein, putative, unclassified, expressed FN829-S Chr11 19197001 19292000 0 0 Deletion 95000 LOC_Os11g32540 chalcone synthase, putative, expressed FN829-S Chr11 19197001 19292000 0 0 Deletion 95000 LOC_Os11g32550 conserved hypothetical protein FN829-S Chr11 19197001 19292000 0 0 Deletion 95000 LOC_Os11g32560 expressed protein FN829-S Chr11 19197001 19292000 0 0 Deletion 95000 LOC_Os11g32570 expressed protein FN829-S Chr11 19197001 19292000 0 0 Deletion 95000 LOC_Os11g32580 chalcone synthase, putative, expressed FN829-S Chr11 19197001 19292000 0 0 Deletion 95000 LOC_Os11g32590 transposon protein, putative, Mariner sub-class, expressed FN829-S Chr11 19197001 19292000 0 0 Deletion 95000 LOC_Os11g32600 hypothetical protein FN829-S Chr11 19197001 19292000 0 0 Deletion 95000 LOC_Os11g32610 chalcone and stilbene synthases, putative, expressed FN829-S Chr11 19197001 19292000 0 0 Deletion 95000 LOC_Os11g32620 chalcone synthase, putative, expressed FN829-S Chr11 19197001 19292000 0 0 Deletion 95000 LOC_Os11g32630 expressed protein FN829-S Chr11 19197001 19292000 0 0 Deletion 95000 LOC_Os11g32640 hypothetical protein FN829-S Chr11 19197001 19292000 0 0 Deletion 95000 LOC_Os11g32650 chalcone synthase, putative, expressed FN829-S Chr11 19197001 19292000 0 0 Deletion 95000 LOC_Os11g32660 transposon protein, putative, unclassified, expressed FN829-S Chr11 19291871 21691230 0 0 Inversion 2399359 FN829-S Chr11 19292071 21691225 0 0 Inversion 2399154 FN829-S Chr11 20413851 G-T 0 0 Single Base Substitution 0 INTRON HET FN829-S Chr11 23062687 23062688 0 0 Deletion 1 FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39800 expressed protein FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39810 expressed protein FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39820 expressed protein FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39830 expressed protein FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39840 expressed protein FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39850 expressed protein FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39860 retrotransposon protein, putative, Ty3-gypsy subclass FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39870 retrotransposon protein, putative, unclassified, expressed FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39880 retrotransposon protein, putative, Ty3-gypsy subclass FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39890 retrotransposon protein, putative, unclassified FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39900 retrotransposon protein, putative, unclassified, expressed FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39910 DEFL80 - Defensin and Defensin-like DEFL family, expressed FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39920 expressed protein FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39940 transposon protein, putative, unclassified, expressed FN829-S Chr11 23710001 23807000 0 0 Deletion 97000 LOC_Os11g39950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN829-S Chr11 26129615 26129615 0 0 Insertion 2 FN829-S Chr11 4244738 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN829-S Chr12 13396680 Chr3 5009447 0 Translocation 0 FN829-S Chr12 25034866 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN829-S Chr2 13078590 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN829-S Chr2 2215946 2215947 0 0 Deletion 1 FN829-S Chr2 7537258 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN829-S Chr3 20566862 20634239 0 0 Inversion 67377 LOC_Os03g37110 expressed protein FN829-S Chr3 21971107 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g39570 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN829-S Chr3 21971108 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os03g39570 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN829-S Chr3 23797985 A-T 0 0 Single Base Substitution 0 INTRON HET FN829-S Chr3 30755479 30755488 0 0 Deletion 9 FN829-S Chr3 33177300 33177306 0 0 Deletion 6 FN829-S Chr3 4678172 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN829-S Chr3 4996160 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN829-S Chr4 2361885 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN829-S Chr4 6153902 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN829-S Chr4 8371328 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN829-S Chr5 22898705 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g39040 retrotransposon protein, putative, unclassified, expressed FN829-S Chr5 6546094 6546094 0 0 Insertion 1 FN829-S Chr5 979004 979004 0 0 Insertion 1 FN829-S Chr6 29862591 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN829-S Chr7 12405525 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN829-S Chr7 23742040 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN829-S Chr8 12090378 12090386 0 0 Deletion 8 LOC_Os08g20170 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN829-S Chr8 13048176 13048177 0 0 Deletion 1 LOC_Os08g21800 retrotransposon protein, putative, unclassified, expressed FN829-S Chr8 17188900 18100772 0 0 Inversion 911872 LOC_Os08g29520 cytochrome b561, putative, expressed FN829-S Chr8 17188929 20751098 0 0 Inversion 3562169 FN829-S Chr8 17189419 20751098 0 0 Inversion 3561679 FN829-S Chr8 17189433 18100782 0 0 Inversion 911349 LOC_Os08g29520 cytochrome b561, putative, expressed FN829-S Chr8 18534940 18534943 0 0 Deletion 3 FN829-S Chr8 25473788 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN829-S Chr8 25718786 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN829-S Chr8 26098392 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN829-S Chr8 9074518 9074525 0 0 Deletion 7 FN829-S Chr9 18875649 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os09g31390 transcription factor, putative, expressed