FN846-S Chr1 1356187 1356187 0 0 Insertion 1 FN846-S Chr1 14137974 C-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN846-S Chr1 24292437 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN846-S Chr1 31602426 31602437 0 0 Deletion 11 FN846-S Chr1 32088096 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN846-S Chr1 40122026 40122029 0 0 Deletion 3 FN846-S Chr1 40919504 40919507 0 0 Deletion 3 FN846-S Chr10 14019870 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr10 14886219 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr10 16382612 16382648 0 0 Deletion 36 FN846-S Chr10 2763862 2763866 0 0 Deletion 4 FN846-S Chr10 333003 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN846-S Chr11 14531398 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr11 16749360 16749407 0 0 Deletion 47 FN846-S Chr11 1818193 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr11 25011806 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN846-S Chr11 7914115 7914125 0 0 Deletion 10 LOC_Os11g14170 OsDegp12 - Putative Deg protease homologue, expressed FN846-S Chr11 871553 871553 0 0 Insertion 2 FN846-S Chr11 9715520 9715520 0 0 Insertion 2 FN846-S Chr12 11396642 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr12 4461271 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr12 5660128 Chr3 20221656 0 Translocation 0 LOC_Os03g36520 retrotransposon, putative, centromere-specific, expressed FN846-S Chr2 149892 149893 0 0 Deletion 1 FN846-S Chr2 20712721 T-A 0 0 Single Base Substitution 0 INTRON HET FN846-S Chr2 24733030 24733036 0 0 Deletion 6 LOC_Os02g40810 Zinc finger, ZZ type domain containing protein, expressed FN846-S Chr2 25996851 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr2 26172956 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN846-S Chr2 28087196 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN846-S Chr3 17645942 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os03g30980 retrotransposon protein, putative, unclassified, expressed FN846-S Chr3 30157618 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN846-S Chr3 3444799 3444811 0 0 Deletion 12 FN846-S Chr3 7129959 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN846-S Chr3 7941152 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22550 retrotransposon protein, putative, unclassified FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22560 retrotransposon protein, putative, unclassified, expressed FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22570 retrotransposon protein, putative, unclassified, expressed FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22590 retrotransposon protein, putative, Ty3-gypsy subclass FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22600 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22610 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22620 retrotransposon protein, putative, Ty3-gypsy subclass FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22630 retrotransposon protein, putative, unclassified, expressed FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22640 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22660 tropinone reductase, putative, expressed FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22670 hypothetical protein FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22690 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22700 expressed protein FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22720 expressed protein FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22730 tropinone reductase, putative, expressed FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22740 conserved hypothetical protein FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22750 hypothetical protein FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22760 expressed protein FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22770 hypothetical protein FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22780 transposon protein, putative, unclassified FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22800 expressed protein FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22810 transposon protein, putative, CACTA, En/Spm sub-class FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22820 expressed protein FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22830 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN846-S Chr4 12763001 12941000 0 0 Deletion 178000 LOC_Os04g22840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN846-S Chr4 12835681 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN846-S Chr4 24760587 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr4 31410576 31410579 0 0 Deletion 3 LOC_Os04g52750 expressed protein FN846-S Chr4 3526873 3526879 0 0 Deletion 6 FN846-S Chr4 4303802 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr4 8184028 8184033 0 0 Deletion 5 LOC_Os04g14580 retrotransposon protein, putative, unclassified, expressed FN846-S Chr4 971100 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr5 14520416 14520416 0 0 Insertion 2 FN846-S Chr5 15072408 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr5 15419405 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr5 16290927 C-T 0 0 Single Base Substitution 0 INTRON HET FN846-S Chr5 1965199 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr5 20378103 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr5 21507922 21507922 0 0 Insertion 1 FN846-S Chr5 4680237 4680240 0 0 Deletion 3 FN846-S Chr5 8562120 Chr1 40306292 0 Translocation 0 FN846-S Chr6 14616789 C-G 0 0 Single Base Substitution 0 UTR_5_PRIME HET FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33770 retrotransposon, putative, centromere-specific FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33780 expressed protein FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33790 hypothetical protein FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33800 hypothetical protein FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33810 zinc finger protein, putative, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33820 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33830 transposon protein, putative, CACTA, En/Spm sub-class FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33840 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33850 retrotransposon protein, putative, unclassified FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33860 retrotransposon protein, putative, unclassified, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33870 transposon protein, putative, CACTA, En/Spm sub-class FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33880 expressed protein FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33890 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33910 expressed protein FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33930 Divergent PAP2 family domain containing protein, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33940 NAC domain containing protein, putative, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33970 VQ domain containing protein, putative, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33980 tRNA-splicing endonuclease subunit Sen2, putative, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g33990 expressed protein FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34000 transposon protein, putative, CACTA, En/Spm sub-class FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34020 glycosyl hydrolases family 17, putative, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34030 expressed protein FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34040 DJ-1 family protein, putative, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34060 proteins of unknown function domain containing protein, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34070 GDSL-like lipase/acylhydrolase, putative, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34080 expressed protein FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34090 retrotransposon protein, putative, Ty1-copia subclass, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34100 expressed protein FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34110 expressed protein FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34120 GDSL-like lipase/acylhydrolase, putative, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34140 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34150 retrotransposon protein, putative, Ty3-gypsy subclass FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34160 hypothetical protein FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34180 expressed protein FN846-S Chr6 19647001 19911000 0 0 Deletion 264000 LOC_Os06g34190 expressed protein FN846-S Chr6 27644954 27959895 0 0 Inversion 314941 FN846-S Chr6 27644979 27959908 0 0 Inversion 314929 FN846-S Chr6 3212366 3212375 0 0 Deletion 9 FN846-S Chr6 5112048 5112048 0 0 Insertion 1 FN846-S Chr6 6812272 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN846-S Chr6 8514825 8514826 0 0 Deletion 1 FN846-S Chr6 8823064 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g15550 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed FN846-S Chr6 9438393 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr7 11086266 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN846-S Chr7 12403177 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN846-S Chr7 15599599 C-G 0 0 Single Base Substitution 0 INTRON HET FN846-S Chr7 20473417 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN846-S Chr7 26465630 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN846-S Chr7 28292358 28292359 0 0 Deletion 1 FN846-S Chr7 7845546 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr7 8675827 A-G 0 0 Single Base Substitution 0 INTRON HOMO FN846-S Chr8 1368032 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr8 13782991 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr8 1401781 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN846-S Chr8 1719664 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g03630 acyl-activating enzyme 14, putative, expressed FN846-S Chr8 20085411 20085411 0 0 Insertion 2 FN846-S Chr8 2305655 2305657 0 0 Deletion 2 FN846-S Chr9 13251077 G-A 0 0 Single Base Substitution 0 STOP_GAINED HOMO LOC_Os09g21880 hypothetical protein FN846-S Chr9 3997712 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g07860 retrotransposon protein, putative, unclassified