FN899-S Chr1 13467976 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN899-S Chr1 30258509 30258510 0 0 Deletion 1 LOC_Os01g52640 suppressor of phythchrome A, putative, expressed FN899-S Chr1 30576706 30576708 0 0 Deletion 2 FN899-S Chr1 31394305 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN899-S Chr1 31394307 31394311 0 0 Deletion 4 FN899-S Chr1 33655492 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr1 33982501 33982504 0 0 Deletion 3 LOC_Os01g58810 retrotransposon protein, putative, Ty1-copia subclass, expressed FN899-S Chr1 39069905 39069911 0 0 Deletion 6 FN899-S Chr10 11338878 Chr5 5644610 0 Translocation 0 LOC_Os05g10340 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN899-S Chr10 11338878 Chr5 5644610 0 Translocation 0 LOC_Os10g21956 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN899-S Chr10 11784218 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr10 11784219 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr10 11785830 11785832 0 0 Deletion 2 FN899-S Chr10 12407415 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr10 13415588 13415589 0 0 Deletion 1 LOC_Os10g25880 retrotransposon protein, putative, unclassified, expressed FN899-S Chr10 17292057 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr10 20129261 20209851 0 0 Inversion 80590 FN899-S Chr11 10816576 Chr3 10819053 0 Translocation 0 LOC_Os03g19240 AMP-binding enzyme, putative, expressed FN899-S Chr11 10816576 Chr3 10819053 0 Translocation 0 LOC_Os11g18980 expressed protein FN899-S Chr11 11179822 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN899-S Chr11 1167693 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr11 17383154 17383167 0 0 Deletion 13 FN899-S Chr11 18258937 T-G 0 0 Single Base Substitution 0 INTRON HET FN899-S Chr11 23872173 23872174 0 0 Deletion 1 FN899-S Chr11 25728381 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g42710 retrotransposon protein, putative, unclassified, expressed FN899-S Chr11 7589924 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr11 8958664 Chr5 10674037 0 Translocation 0 LOC_Os05g18470 CRAL/TRIO domain containing protein, expressed FN899-S Chr12 10496081 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g18190 retrotransposon protein, putative, unclassified, expressed FN899-S Chr12 21403139 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr12 23855122 23855122 0 0 Insertion 1 FN899-S Chr12 3389438 3389439 0 0 Deletion 1 FN899-S Chr12 7166323 7166323 0 0 Insertion 10 FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16330 retrotransposon protein, putative, Ty3-gypsy subclass FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16340 retrotransposon protein, putative, unclassified, expressed FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16350 enoyl-CoA hydratase/isomerase family protein, putative, expressed FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16360 expressed protein FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16370 retrotransposon protein, putative, unclassified FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16380 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16390 retrotransposon protein, putative, unclassified, expressed FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16400 transposon protein, putative, CACTA, En/Spm sub-class FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16410 isoflavone reductase, putative, expressed FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16420 transposon protein, putative, CACTA, En/Spm sub-class FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16430 retrotransposon protein, putative, unclassified, expressed FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16440 retrotransposon protein, putative, unclassified, expressed FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16450 retrotransposon protein, putative, unclassified, expressed FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16460 retrotransposon protein, putative, unclassified, expressed FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16470 hypothetical protein FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16480 expressed protein FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16490 transposon protein, putative, unclassified, expressed FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16500 transposon protein, putative, unclassified, expressed FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16510 expressed protein FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16520 wall-associated receptor kinase 3 precursor, putative, expressed FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16524 glutaredoxin-C8 precursor, putative, expressed FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16530 hypothetical protein FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16540 OsWAK124 - OsWAK receptor-like protein OsWAK-RLP, expressed FN899-S Chr12 9341001 9485000 0 0 Deletion 144000 LOC_Os12g16550 expressed protein FN899-S Chr2 11685367 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr2 14509345 C-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN899-S Chr2 16081489 16096151 0 0 Inversion 14662 FN899-S Chr2 16082615 16096152 0 0 Inversion 13537 LOC_Os02g27300 SCP-like extracellular protein, expressed FN899-S Chr2 20207848 20207869 0 0 Deletion 21 LOC_Os02g33910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN899-S Chr2 20553194 C-A 0 0 Single Base Substitution 0 INTRON HET FN899-S Chr2 20553195 T-A 0 0 Single Base Substitution 0 INTRON HET FN899-S Chr2 21411014 21411037 0 0 Deletion 23 LOC_Os02g35590 glutathione S-transferase, putative, expressed FN899-S Chr2 25348487 28249280 0 0 Inversion 2900793 LOC_Os02g42150 OsWAK14 - OsWAK receptor-like protein kinase, expressed FN899-S Chr2 25922001 25976000 0 0 Deletion 54000 LOC_Os02g43050 kinesin motor domain containing protein, expressed FN899-S Chr2 25922001 25976000 0 0 Deletion 54000 LOC_Os02g43060 retrotransposon protein, putative, Ty1-copia subclass FN899-S Chr2 25922001 25976000 0 0 Deletion 54000 LOC_Os02g43070 retrotransposon protein, putative, unclassified, expressed FN899-S Chr2 25922001 25976000 0 0 Deletion 54000 LOC_Os02g43080 PPR repeat domain containing protein, putative, expressed FN899-S Chr2 25922001 25976000 0 0 Deletion 54000 LOC_Os02g43090 myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed FN899-S Chr2 25922001 25976000 0 0 Deletion 54000 LOC_Os02g43100 expressed protein FN899-S Chr2 25922001 25976000 0 0 Deletion 54000 LOC_Os02g43110 sodium/calcium exchanger 1 precursor, putative, expressed FN899-S Chr2 25922001 25976000 0 0 Deletion 54000 LOC_Os02g43120 zinc finger, C3HC4 type domain containing protein, expressed FN899-S Chr2 25922001 25976000 0 0 Deletion 54000 LOC_Os02g43130 kinesin motor domain containing protein, expressed FN899-S Chr2 26392004 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN899-S Chr2 35438290 35438294 0 0 Deletion 4 FN899-S Chr3 11543836 11543844 0 0 Deletion 8 FN899-S Chr3 12212667 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN899-S Chr3 12370005 12370006 0 0 Deletion 1 FN899-S Chr3 21448232 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN899-S Chr3 36208168 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN899-S Chr3 5435212 A-G 0 0 Single Base Substitution 0 INTRON HET FN899-S Chr4 10793252 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr4 13779622 13779623 0 0 Deletion 1 FN899-S Chr4 16117707 16117715 0 0 Deletion 8 FN899-S Chr4 21910966 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN899-S Chr4 22977879 T-C 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO FN899-S Chr4 33061599 33061604 0 0 Deletion 5 FN899-S Chr4 6100417 18323903 0 0 Inversion 12223486 FN899-S Chr4 6168483 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr5 12348308 12348320 0 0 Deletion 12 FN899-S Chr5 20891404 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g35180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN899-S Chr5 21516761 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN899-S Chr5 27922668 27922676 0 0 Deletion 8 FN899-S Chr5 2881901 2881918 0 0 Deletion 17 FN899-S Chr5 3448868 4208402 0 0 Inversion 759534 FN899-S Chr5 3465852 4208399 0 0 Inversion 742547 LOC_Os05g06670 gibberellin 2-oxidase, putative, expressed FN899-S Chr5 6784789 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr5 6784790 6784792 0 0 Deletion 2 FN899-S Chr5 6784792 6784794 0 0 Deletion 2 FN899-S Chr6 17734589 17734591 0 0 Deletion 2 FN899-S Chr6 19388027 19388040 0 0 Deletion 13 LOC_Os06g33300 retrotransposon protein, putative, unclassified, expressed FN899-S Chr6 26920594 Chr4 11757204 0 Translocation 0 LOC_Os04g20950 retrotransposon protein, putative, unclassified, expressed FN899-S Chr6 26920594 Chr4 11757204 0 Translocation 0 LOC_Os06g44580 retrotransposon protein, putative, unclassified, expressed FN899-S Chr6 29009429 Chr2 16082677 0 Translocation 0 LOC_Os02g27300 SCP-like extracellular protein, expressed FN899-S Chr6 5744942 Chr2 16081486 0 Translocation 0 FN899-S Chr7 13623073 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr7 18226425 G-A 0 0 Single Base Substitution 0 INTRON HOMO FN899-S Chr7 20719776 Chr5 3465867 0 Translocation 0 LOC_Os05g06670 gibberellin 2-oxidase, putative, expressed FN899-S Chr7 20720233 Chr5 3468016 0 Translocation 0 LOC_Os05g06680 expressed protein FN899-S Chr7 28372205 28372214 0 0 Deletion 9 FN899-S Chr7 4537088 4537090 0 0 Deletion 2 FN899-S Chr7 4551120 4551122 0 0 Deletion 2 FN899-S Chr8 15238874 15238874 0 0 Insertion 2 FN899-S Chr8 17418744 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os08g28520 retrotransposon protein, putative, unclassified FN899-S Chr8 24210822 24210822 0 0 Insertion 2 FN899-S Chr8 24603088 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os08g38930 retrotransposon protein, putative, Ty3-gypsy subclass FN899-S Chr8 4854231 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr8 4854232 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr8 7731011 Chr2 12621038 0 Translocation 0 LOC_Os02g21269 expressed protein FN899-S Chr8 7731011 Chr2 12621038 0 Translocation 0 LOC_Os08g13014 expressed protein FN899-S Chr8 9841284 Chr3 18929725 0 Translocation 0 LOC_Os08g16140 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN899-S Chr9 10133934 10133939 0 0 Deletion 5 FN899-S Chr9 10926085 T-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN899-S Chr9 13311171 13311173 0 0 Deletion 2 FN899-S Chr9 16300272 16300273 0 0 Deletion 1 FN899-S Chr9 2774317 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr9 4897193 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN899-S Chr9 4897275 4897275 0 0 Insertion 2 FN899-S Chr9 9612539 C-T 0 0 Single Base Substitution 0 INTERGENIC HET