FN912-S Chr1 10339168 10339175 0 0 Deletion 7 FN912-S Chr1 11081058 G-A 0 0 Single Base Substitution 0 INTRON HET FN912-S Chr1 13322208 C-A 0 0 Single Base Substitution 0 INTRON HET FN912-S Chr1 13322210 T-A 0 0 Single Base Substitution 0 INTRON HET FN912-S Chr1 21079068 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN912-S Chr1 21394063 22186980 0 0 Inversion 792917 FN912-S Chr1 8786502 8786506 0 0 Deletion 4 FN912-S Chr10 12417755 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN912-S Chr10 12618247 12618251 0 0 Deletion 4 LOC_Os10g24580 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr10 12747451 12747459 0 0 Deletion 8 LOC_Os10g24790 transposon protein, putative, unclassified, expressed FN912-S Chr10 15755838 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN912-S Chr10 3587879 G-A 0 0 Single Base Substitution 0 INTRON HET FN912-S Chr11 25137100 25137113 0 0 Deletion 13 FN912-S Chr11 2690502 2690502 0 0 Insertion 1 FN912-S Chr11 3500038 Chr4 16367980 0 Translocation 0 FN912-S Chr11 7391556 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN912-S Chr12 10844427 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN912-S Chr12 11888574 G-C 0 0 Single Base Substitution 0 INTERGENIC HET FN912-S Chr12 20758776 20758778 0 0 Deletion 2 FN912-S Chr12 2949898 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN912-S Chr12 7111760 7111774 0 0 Deletion 14 FN912-S Chr12 8991962 8991963 0 0 Deletion 1 LOC_Os12g15750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr2 13293737 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN912-S Chr2 20838555 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN912-S Chr2 23610961 23610966 0 0 Deletion 5 FN912-S Chr2 28584802 28584802 0 0 Insertion 1 FN912-S Chr2 3590576 3590577 0 0 Deletion 1 FN912-S Chr3 11130380 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN912-S Chr3 18708901 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN912-S Chr3 21475838 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN912-S Chr3 21747970 21747975 0 0 Deletion 5 FN912-S Chr3 22843833 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN912-S Chr3 23239628 23240022 0 0 Deletion 394 LOC_Os03g41850 transposon protein, putative, unclassified FN912-S Chr3 2813584 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN912-S Chr3 33122697 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN912-S Chr3 9752150 9752151 0 0 Deletion 1 LOC_Os03g17550 serine/threonine-protein kinase, putative, expressed FN912-S Chr4 12559031 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN912-S Chr4 13464637 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO FN912-S Chr4 17526659 17526665 0 0 Deletion 6 LOC_Os04g29469 retrotransposon protein, putative, unclassified, expressed FN912-S Chr4 31326156 31326168 0 0 Deletion 12 FN912-S Chr4 31345682 31345705 0 0 Deletion 23 FN912-S Chr4 31654324 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN912-S Chr4 7606734 C-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g13630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN912-S Chr4 7835684 G-A 0 0 Single Base Substitution 0 INTRON HET FN912-S Chr4 797958 797963 0 0 Deletion 5 FN912-S Chr5 13294087 13294108 0 0 Deletion 21 LOC_Os05g23290 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr5 150755 150765 0 0 Deletion 10 LOC_Os05g01210 expressed protein FN912-S Chr5 17160769 Chr3 23240020 0 Translocation 0 LOC_Os03g41850 transposon protein, putative, unclassified FN912-S Chr5 17160769 Chr3 23240020 0 Translocation 0 LOC_Os05g29690 retrotransposon protein, putative, unclassified, expressed FN912-S Chr5 17160781 Chr3 23239631 0 Translocation 0 LOC_Os03g41850 transposon protein, putative, unclassified FN912-S Chr5 17160781 Chr3 23239631 0 Translocation 0 LOC_Os05g29690 retrotransposon protein, putative, unclassified, expressed FN912-S Chr5 18905199 19090011 0 0 Inversion 184812 LOC_Os05g32400 retrotransposon protein, putative, unclassified FN912-S Chr5 6833696 G-T 0 0 Single Base Substitution 0 INTRON HET FN912-S Chr5 6833697 T-G 0 0 Single Base Substitution 0 INTRON HET FN912-S Chr6 11928419 G-T 0 0 Single Base Substitution 0 INTRON HET FN912-S Chr6 15230899 15230903 0 0 Deletion 4 FN912-S Chr6 22494240 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN912-S Chr6 23925613 23925613 0 0 Insertion 4 FN912-S Chr6 27452264 27452264 0 0 Insertion 10 FN912-S Chr6 335541 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os06g01560 retrotransposon protein, putative, unclassified, expressed FN912-S Chr7 15743899 A-T 0 0 Single Base Substitution 0 INTRON HET FN912-S Chr7 24313236 24313236 0 0 Insertion 2 FN912-S Chr7 99381 99387 0 0 Deletion 6 FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22012 retrotransposon protein, putative, unclassified, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22014 retrotransposon protein, putative, unclassified FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22016 retrotransposon protein, putative, unclassified FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22018 retrotransposon, putative, centromere-specific, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22020 retrotransposon, putative, centromere-specific, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22022 retrotransposon protein, putative, unclassified FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22024 retrotransposon protein, putative, unclassified, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22026 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22028 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22032 retrotransposon protein, putative, Ty1-copia subclass FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22034 hypothetical protein FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22036 retrotransposon protein, putative, unclassified, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22054 retrotransposon protein, putative, unclassified, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22080 retrotransposon, putative, centromere-specific FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22100 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22130 retrotransposon, putative, centromere-specific, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22149 CBS domain containing membrane protein, putative, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22170 expressed protein FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22190 expressed protein FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22200 expressed protein FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22210 retrotransposon protein, putative, unclassified FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22250 expressed protein FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22260 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22270 retrotransposon protein, putative, Ty3-gypsy subclass FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22284 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22300 retrotransposon, putative, centromere-specific FN912-S Chr8 13218001 13450000 0 0 Deletion 232000 LOC_Os08g22310 retrotransposon protein, putative, unclassified, expressed FN912-S Chr8 18838655 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN912-S Chr8 5529995 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11300 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11310 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11320 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11330 retrotransposon protein, putative, unclassified FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11340 expressed protein FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11350 retrotransposon protein, putative, Ty3-gypsy subclass FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11360 retrotransposon protein, putative, Ty3-gypsy subclass FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11370 retrotransposon protein, putative, Ty3-gypsy subclass FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11390 retrotransposon protein, putative, Ty3-gypsy subclass FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11400 retrotransposon protein, putative, unclassified FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11410 retrotransposon protein, putative, unclassified, expressed FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11420 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11430 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11440 retrotransposon protein, putative, unclassified FN912-S Chr8 6643001 6722000 0 0 Deletion 79000 LOC_Os08g11450 expressed protein FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11599 expressed protein FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11610 retrotransposon protein, putative, unclassified FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11620 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11630 retrotransposon protein, putative, Ty3-gypsy subclass FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11640 expressed protein FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11650 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11660 transposon protein, putative, CACTA, En/Spm sub-class FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11669 expressed protein FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11680 transposon protein, putative, CACTA, En/Spm sub-class FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11690 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11700 hypothetical protein FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11720 expressed protein FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11730 retrotransposon protein, putative, unclassified FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11740 retrotransposon protein, putative, unclassified FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11760 expressed protein FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11770 transposon protein, putative, unclassified FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11790 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11800 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11810 retrotransposon protein, putative, unclassified, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11820 transposon protein, putative, unclassified, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11830 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11840 retrotransposon protein, putative, unclassified, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11850 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11860 retrotransposon protein, putative, unclassified, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11870 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11880 retrotransposon protein, putative, unclassified, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11890 retrotransposon protein, putative, unclassified, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11900 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11910 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11920 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11940 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11960 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11980 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g11990 retrotransposon protein, putative, Ty3-gypsy subclass FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g12000 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g12010 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g12020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g12040 retrotransposon protein, putative, unclassified, expressed FN912-S Chr8 6775001 7100000 0 0 Deletion 325000 LOC_Os08g12050 retrotransposon protein, putative, unclassified, expressed FN912-S Chr9 10347710 10347710 0 0 Insertion 1 FN912-S Chr9 15434740 15434748 0 0 Deletion 8 FN912-S Chr9 18369318 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO