FN939-S Chr1 12699874 12699879 0 0 Deletion 5 FN939-S Chr1 13762378 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g24410 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN939-S Chr1 14244358 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN939-S Chr1 19862288 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN939-S Chr1 21013225 21013353 0 0 Deletion 128 LOC_Os01g37580 retrotransposon protein, putative, unclassified, expressed FN939-S Chr1 22956132 23224255 0 0 Inversion 268123 LOC_Os01g40630 uncharacterized protein PA4923, putative, expressed FN939-S Chr1 22956132 23224255 0 0 Inversion 268123 LOC_Os01g41010 DUF581 domain containing protein, expressed FN939-S Chr1 25913578 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN939-S Chr1 42314248 A-C 0 0 Single Base Substitution 0 INTERGENIC HET FN939-S Chr1 6363796 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN939-S Chr10 10426270 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN939-S Chr10 15968712 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN939-S Chr10 22476491 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os10g41760 chlorophyllide a oxygenase, chloroplast precursor, putative, expressed FN939-S Chr10 672882 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN939-S Chr11 17287190 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN939-S Chr11 17287191 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN939-S Chr11 19437951 19437953 0 0 Deletion 2 LOC_Os11g32900 retinoblastoma-related protein-like, putative, expressed FN939-S Chr11 24270495 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN939-S Chr11 24273337 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN939-S Chr11 25387235 25387240 0 0 Deletion 5 FN939-S Chr11 25525973 25525974 0 0 Deletion 1 FN939-S Chr11 26547676 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN939-S Chr11 27711045 27711045 0 0 Insertion 6 FN939-S Chr12 25815612 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN939-S Chr12 7793895 7793896 0 0 Deletion 1 FN939-S Chr2 21771740 21771740 0 0 Insertion 2 FN939-S Chr2 28736446 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN939-S Chr2 4592200 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN939-S Chr3 12071705 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN939-S Chr3 12705674 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN939-S Chr3 15783594 15795900 0 0 Inversion 12306 LOC_Os03g27510 OsSCP15 - Putative Serine Carboxypeptidase homologue, expressed FN939-S Chr3 15783594 15795900 0 0 Inversion 12306 LOC_Os03g27530 OsSCP16 - Putative Serine Carboxypeptidase homologue, expressed FN939-S Chr3 15783606 15795900 0 0 Inversion 12294 LOC_Os03g27510 OsSCP15 - Putative Serine Carboxypeptidase homologue, expressed FN939-S Chr3 15783606 15795900 0 0 Inversion 12294 LOC_Os03g27530 OsSCP16 - Putative Serine Carboxypeptidase homologue, expressed FN939-S Chr3 26938960 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN939-S Chr3 29329600 C-T 0 0 Single Base Substitution 0 INTRON HET FN939-S Chr3 30769790 G-T 0 0 Single Base Substitution 0 INTRON HET FN939-S Chr3 30769792 C-A 0 0 Single Base Substitution 0 INTRON HET FN939-S Chr3 30769794 A-T 0 0 Single Base Substitution 0 INTRON HET FN939-S Chr3 3523491 3554083 0 0 Inversion 30592 LOC_Os03g06960 vesicle-associated membrane protein, putative, expressed FN939-S Chr3 3523577 3561138 0 0 Inversion 37561 FN939-S Chr3 4347645 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN939-S Chr3 5260532 5260532 0 0 Insertion 4 FN939-S Chr4 13262006 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g23240 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN939-S Chr4 19682462 19682465 0 0 Deletion 3 FN939-S Chr4 27034352 27034353 0 0 Deletion 1 LOC_Os04g45700 COBRA, putative, expressed FN939-S Chr4 5757085 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g10600 expressed protein FN939-S Chr5 10931697 10931698 0 0 Deletion 1 LOC_Os05g18810 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN939-S Chr5 16598855 16598874 0 0 Deletion 19 FN939-S Chr5 16897098 T-A 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN939-S Chr5 17840492 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN939-S Chr5 19424100 19424101 0 0 Deletion 1 FN939-S Chr5 3822719 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN939-S Chr6 14970087 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN939-S Chr6 22701512 Chr4 28778256 0 Translocation 0 LOC_Os06g38320 expressed protein FN939-S Chr6 25029418 25029428 0 0 Deletion 10 FN939-S Chr6 26658106 T-A 0 0 Single Base Substitution 0 INTRON HET FN939-S Chr6 3987115 3987116 0 0 Deletion 1 FN939-S Chr7 10808021 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN939-S Chr7 15344151 15344160 0 0 Deletion 9 FN939-S Chr7 18846637 18846638 0 0 Deletion 1 FN939-S Chr7 20500167 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN939-S Chr7 2630111 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os07g05600 retrotransposon protein, putative, unclassified, expressed FN939-S Chr7 4395036 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN939-S Chr7 8499708 8499708 0 0 Insertion 3 LOC_Os07g14850 CESA6 - cellulose synthase, expressed FN939-S Chr8 1351532 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN939-S Chr8 27430859 27430859 0 0 Insertion 2 FN939-S Chr9 13667458 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN939-S Chr9 13667464 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN939-S Chr9 14918266 14918272 0 0 Deletion 6 LOC_Os09g24970 expressed protein FN939-S Chr9 18130730 18130961 0 0 Deletion 231 FN939-S Chr9 367106 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN939-S Chr9 9178013 9178024 0 0 Deletion 11 LOC_Os09g15120 retrotransposon protein, putative, Ty3-gypsy subclass, expressed