FN949-S Chr1 22875625 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN949-S Chr1 23678144 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr1 30856505 30856506 0 0 Deletion 1 FN949-S Chr1 36473766 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr1 36473767 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr1 37565278 37746599 0 0 Inversion 181321 LOC_Os01g65030 S-locus-specific glycoprotein precursor, putative, expressed FN949-S Chr10 11730512 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr10 15198338 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr10 15198339 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr10 15239137 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr10 2139977 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr10 4455576 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr10 6088072 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr11 10733491 10733493 0 0 Deletion 2 FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24730 receptor-interacting serine/threonine-protein kinase 4, putative, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24740 hypothetical protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24750 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24760 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24770 ankyrin repeat domain containing protein, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24780 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24790 retrotransposon protein, putative, unclassified, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24800 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24810 transposon protein, putative, unclassified, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24824 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24840 ankyrin repeat family protein, putative, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24850 ankyrin repeat domain containing protein, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24860 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24870 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24880 transposon protein, putative, CACTA, En/Spm sub-class FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24890 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24900 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24910 hypothetical protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24920 retrotransposon protein, putative, unclassified, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24930 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24940 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24950 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24964 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24980 hypothetical protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g24990 retrotransposon protein, putative, unclassified, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25000 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25010 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25020 plant-specific domain TIGR01615 family protein, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25040 plant-specific domain TIGR01615 family protein, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25050 retrotransposon protein, putative, unclassified, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25060 flavonol synthase/flavanone 3-hydroxylase, putative, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25070 retrotransposon protein, putative, unclassified, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25080 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25090 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25100 tropinone reductase, putative, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25110 tropinone reductase 2, putative, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25120 transposon protein, putative, unclassified FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25130 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25140 hypothetical protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25160 tropinone reductase 2, putative, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25180 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25190 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25200 transposon protein, putative, CACTA, En/Spm sub-class FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25210 retrotransposon protein, putative, unclassified, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25220 oxidoreductase, short chain dehydrogenase/reductase domain containing protein, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25230 tropinone reductase, putative FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25240 retrotransposon protein, putative, unclassified, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25260 nucleoside-triphosphatase, putative, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25270 retrotransposon protein, putative, unclassified, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25280 retrotransposon protein, putative, unclassified FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25290 retrotransposon protein, putative, unclassified, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25310 retrotransposon protein, putative, Ty3-gypsy subclass FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25330 nucleoside-triphosphatase, putative, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25340 retrotransposon protein, putative, unclassified, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25350 retrotransposon protein, putative, unclassified FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25360 retrotransposon protein, putative, unclassified, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25370 retrotransposon protein, putative, Ty3-gypsy subclass FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25380 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25390 retrotransposon, putative, centromere-specific FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25410 transposon protein, putative, unclassified, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25420 hypothetical protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25430 retrotransposon protein, putative, unclassified FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25440 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25454 cytokinin-N-glucosyltransferase 1, putative, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25470 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25480 hypothetical protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25490 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25500 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25510 protein kinase domain containing protein, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25520 transposon protein, putative, unclassified, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25530 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25540 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25550 hypothetical protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25560 BHLH transcription factor, putative, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25570 hypothetical protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25590 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25600 expressed protein FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25610 ZOS11-02 - C2H2 zinc finger protein, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25620 glycine-rich RNA-binding protein 8, putative, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25630 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN949-S Chr11 14092001 14619000 0 0 Deletion 527000 LOC_Os11g25640 retrotransposon protein, putative, unclassified, expressed FN949-S Chr11 23091084 C-T 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os11g38820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN949-S Chr11 23093506 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g38820 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN949-S Chr11 28280604 Chr3 7009496 0 Translocation 0 FN949-S Chr12 268588 268590 0 0 Deletion 2 FN949-S Chr2 10199560 T-A 0 0 Single Base Substitution 0 INTRON HET FN949-S Chr2 11385050 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr2 22778610 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr3 1838424 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g04030 HVA22, putative, expressed FN949-S Chr4 1314852 C-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN949-S Chr4 13961398 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr4 15325223 C-A 0 0 Single Base Substitution 0 STOP_GAINED HET LOC_Os04g26290 retrotransposon protein, putative, unclassified, expressed FN949-S Chr4 16021776 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr4 1605980 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN949-S Chr4 19045630 C-T 0 0 Single Base Substitution 0 INTRON HOMO FN949-S Chr4 21247690 21247708 0 0 Deletion 18 FN949-S Chr4 21872576 21872577 0 0 Deletion 1 FN949-S Chr4 29584482 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os04g49610 expressed protein FN949-S Chr4 5386498 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN949-S Chr5 10001411 T-G 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr5 20369899 T-A 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr5 20593097 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr5 20593098 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr6 14193635 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr6 20211010 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr6 25778143 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN949-S Chr6 9597583 C-T 0 0 Single Base Substitution 0 INTRON HET FN949-S Chr7 3165467 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN949-S Chr8 21969501 T-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN949-S Chr9 15933534 16794180 0 0 Inversion 860646 LOC_Os09g26380 aminotransferase, classes I and II, domain containing protein, expressed FN949-S Chr9 16383796 16794171 0 0 Inversion 410375 FN949-S Chr9 16491585 17758227 0 0 Inversion 1266642 LOC_Os09g27110 expressed protein FN949-S Chr9 16491585 17758227 0 0 Inversion 1266642 LOC_Os09g29239 purine permease, putative, expressed FN949-S Chr9 16955399 C-T 0 0 Single Base Substitution 0 INTERGENIC HET