FN959-S Chr1 10609653 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN959-S Chr1 13334067 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN959-S Chr1 17529841 C-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g32010 retrotransposon protein, putative, unclassified, expressed FN959-S Chr1 26927426 26927431 0 0 Deletion 5 FN959-S Chr1 30656297 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os01g53350 anthocyanidin 5,3-O-glucosyltransferase, putative, expressed FN959-S Chr1 30656298 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN959-S Chr1 34286304 34286346 0 0 Deletion 42 FN959-S Chr1 40766934 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN959-S Chr1 40770942 40770943 0 0 Deletion 1 FN959-S Chr1 41526720 C-T 0 0 Single Base Substitution 0 INTERGENIC HET FN959-S Chr1 5486531 T-C 0 0 Single Base Substitution 0 INTRON HOMO FN959-S Chr1 5486599 A-T 0 0 Single Base Substitution 0 INTRON HOMO FN959-S Chr10 11563215 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN959-S Chr10 12561329 A-T 0 0 Single Base Substitution 0 INTRON HET FN959-S Chr10 12561330 C-T 0 0 Single Base Substitution 0 INTRON HET FN959-S Chr10 21360027 T-C 0 0 Single Base Substitution 0 UTR_3_PRIME HET FN959-S Chr10 5740834 5740841 0 0 Deletion 7 FN959-S Chr11 11477660 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN959-S Chr11 18407650 18407650 0 0 Insertion 2 FN959-S Chr11 21010216 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os11g35790 Leucine rich repeat N-terminal domain containing protein, putative, expressed FN959-S Chr11 25650484 Chr7 9569163 0 Translocation 0 LOC_Os11g42610 transposon protein, putative, CACTA, En/Spm sub-class, expressed FN959-S Chr11 25763332 25763332 0 0 Insertion 4 FN959-S Chr12 10143311 10326556 0 0 Inversion 183245 FN959-S Chr12 10271759 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN959-S Chr12 12651513 G-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os12g22400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN959-S Chr12 23059125 23059134 0 0 Deletion 9 FN959-S Chr12 2737703 2737716 0 0 Deletion 13 FN959-S Chr12 5296102 C-A 0 0 Single Base Substitution 0 INTRON HOMO FN959-S Chr12 8904621 Chr10 18963096 0 Translocation 0 FN959-S Chr2 18371365 18371365 0 0 Insertion 2 FN959-S Chr2 32764606 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g53550 retrotransposon protein, putative, unclassified, expressed FN959-S Chr2 33250184 33250201 0 0 Deletion 17 LOC_Os02g54240 OsFBX62 - F-box domain containing protein, expressed FN959-S Chr2 6469408 A-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g12400 receptor-like protein kinase precursor, putative, expressed FN959-S Chr2 6469409 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os02g12400 receptor-like protein kinase precursor, putative, expressed FN959-S Chr2 8820028 11755698 0 0 Inversion 2935670 FN959-S Chr3 11311144 11311153 0 0 Deletion 9 FN959-S Chr3 15135436 15346173 0 0 Inversion 210737 FN959-S Chr3 17198748 17198751 0 0 Deletion 3 FN959-S Chr3 17296025 G-T 0 0 Single Base Substitution 0 INTERGENIC HET FN959-S Chr3 22937377 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN959-S Chr3 24310897 24310905 0 0 Deletion 8 FN959-S Chr3 25354096 Chr1 27882664 0 Translocation 0 FN959-S Chr3 3125221 3125221 0 0 Insertion 1 FN959-S Chr4 10957882 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN959-S Chr4 12702137 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO FN959-S Chr4 21809983 C-A 0 0 Single Base Substitution 0 INTERGENIC HET FN959-S Chr4 21809984 G-A 0 0 Single Base Substitution 0 INTERGENIC HET FN959-S Chr4 25122546 25122549 0 0 Deletion 3 LOC_Os04g42451 expressed protein FN959-S Chr4 28754165 28754170 0 0 Deletion 5 LOC_Os04g48270 OsFBX148 - F-box domain containing protein, expressed FN959-S Chr4 33076747 T-C 0 0 Single Base Substitution 0 INTERGENIC HET FN959-S Chr4 35074674 35074677 0 0 Deletion 3 LOC_Os04g58960 regulator of chromosome condensation, putative, expressed FN959-S Chr4 8060808 8060815 0 0 Deletion 7 FN959-S Chr5 20509306 C-G 0 0 Single Base Substitution 0 INTERGENIC HET FN959-S Chr5 25273810 25273816 0 0 Deletion 6 FN959-S Chr5 28489190 A-T 0 0 Single Base Substitution 0 INTERGENIC HET FN959-S Chr5 6127528 Chr3 25791631 0 Translocation 0 LOC_Os03g45690 retrotransposon protein, putative, unclassified FN959-S Chr5 6127528 Chr3 25791631 0 Translocation 0 LOC_Os05g10970 retrotransposon protein, putative, unclassified FN959-S Chr5 9017603 T-G 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g15970 retrotransposon protein, putative, Ty3-gypsy subclass, expressed FN959-S Chr6 12843378 12843385 0 0 Deletion 7 FN959-S Chr6 15683188 15688412 0 0 Deletion 5224 LOC_Os06g27700 retrotransposon protein, putative, unclassified, expressed FN959-S Chr6 15683188 15688412 0 0 Deletion 5224 LOC_Os06g27710 retrotransposon protein, putative, unclassified, expressed FN959-S Chr6 24183411 T-A 0 0 Single Base Substitution 0 INTRON HOMO FN959-S Chr6 26041573 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO FN959-S Chr6 29437910 29437910 0 0 Insertion 1 FN959-S Chr7 10467936 10467937 0 0 Deletion 1 FN959-S Chr7 12544540 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN959-S Chr7 25797079 C-G 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO FN959-S Chr7 26282583 26282583 0 0 Insertion 4 FN959-S Chr7 28354245 28354245 0 0 Insertion 2 FN959-S Chr7 28856528 A-T 0 0 Single Base Substitution 0 INTRON HET FN959-S Chr7 29382934 29383160 0 0 Deletion 226 LOC_Os07g49080 COBRA-like protein 7 precursor, putative, expressed FN959-S Chr7 3353902 A-G 0 0 Single Base Substitution 0 INTERGENIC HET FN959-S Chr7 5592044 5592056 0 0 Deletion 12 FN959-S Chr7 7898453 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO FN959-S Chr8 15269709 Chr2 12182624 0 Translocation 0 FN959-S Chr8 2643721 2917770 0 0 Inversion 274049 FN959-S Chr8 2643741 2917773 0 0 Inversion 274032 FN959-S Chr9 14756658 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO FN959-S Chr9 18945219 G-C 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET FN959-S Chr9 5495450 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os09g10080 retrotransposon protein, putative, Ty3-gypsy subclass, expressed