W463-2-1 Chr1 10020019 10020046 0 0 Deletion 27 LOC_Os01g17420 expressed protein W463-2-1 Chr1 10024452 10807548 0 0 Inversion 783096 LOC_Os01g17430 coatomer subunit beta-1, putative, expressed W463-2-1 Chr1 10024452 10807548 0 0 Inversion 783096 LOC_Os01g19130 protein phosphatase 2C, putative, expressed W463-2-1 Chr1 10276223 10807534 0 0 Inversion 531311 LOC_Os01g19130 protein phosphatase 2C, putative, expressed W463-2-1 Chr1 1346163 T-A 0 0 Single Base Substitution 0 UTR_5_PRIME HET W463-2-1 Chr1 182278 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO W463-2-1 Chr1 18623503 18623538 0 0 Deletion 35 W463-2-1 Chr1 19640284 19640296 0 0 Deletion 12 W463-2-1 Chr1 19640305 G-A 0 0 Single Base Substitution 0 INTRON HOMO W463-2-1 Chr1 21759427 21759428 0 0 Deletion 1 W463-2-1 Chr1 2319385 2319402 0 0 Deletion 17 W463-2-1 Chr1 33937921 A-G 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO W463-2-1 Chr1 37251009 T-A 0 0 Single Base Substitution 0 INTERGENIC HET W463-2-1 Chr1 40840114 40840114 0 0 Insertion 3 W463-2-1 Chr1 41165769 C-T 0 0 Single Base Substitution 0 INTERGENIC HET W463-2-1 Chr1 7600545 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO W463-2-1 Chr10 14666507 G-T 0 0 Single Base Substitution 0 INTERGENIC HOMO W463-2-1 Chr10 14666508 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO W463-2-1 Chr10 20995899 T-C 0 0 Single Base Substitution 0 INTERGENIC HET W463-2-1 Chr11 17326621 17326628 0 0 Deletion 7 W463-2-1 Chr11 25360006 25360016 0 0 Deletion 10 LOC_Os11g42100 Leucine Rich Repeat family protein, expressed W463-2-1 Chr11 671033 G-A 0 0 Single Base Substitution 0 INTRON HET W463-2-1 Chr11 8583489 G-T 0 0 Single Base Substitution 0 INTERGENIC HET W463-2-1 Chr11 9600208 T-C 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os11g17230 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W463-2-1 Chr12 1185381 1185381 0 0 Insertion 1 W463-2-1 Chr12 12293327 T-A 0 0 Single Base Substitution 0 INTERGENIC HET W463-2-1 Chr12 13219902 C-T 0 0 Single Base Substitution 0 INTRON HET W463-2-1 Chr12 18828029 A-C 0 0 Single Base Substitution 0 INTERGENIC HET W463-2-1 Chr12 23480169 C-T 0 0 Single Base Substitution 0 INTERGENIC HET W463-2-1 Chr12 7845879 T-G 0 0 Single Base Substitution 0 INTERGENIC HET W463-2-1 Chr2 14693150 14693327 0 0 Deletion 177 W463-2-1 Chr2 20119066 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO W463-2-1 Chr2 25308797 25308799 0 0 Deletion 2 W463-2-1 Chr2 31061178 31061184 0 0 Deletion 6 W463-2-1 Chr2 32559957 33310829 0 0 Inversion 750872 LOC_Os02g53180 1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed W463-2-1 Chr2 32559969 33310850 0 0 Inversion 750881 LOC_Os02g53180 1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed W463-2-1 Chr2 32629371 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO W463-2-1 Chr3 17832414 17832414 0 0 Insertion 7 LOC_Os03g31300 chaperone protein clpB 1, putative, expressed W463-2-1 Chr3 18111688 T-A 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO W463-2-1 Chr3 18144507 18144620 0 0 Deletion 113 W463-2-1 Chr3 23140818 23140819 0 0 Deletion 1 W463-2-1 Chr3 23960800 C-T 0 0 Single Base Substitution 0 INTRON HET W463-2-1 Chr3 24401311 C-G 0 0 Single Base Substitution 0 UTR_3_PRIME HET W463-2-1 Chr3 26478365 C-T 0 0 Single Base Substitution 0 INTERGENIC HET W463-2-1 Chr3 31563434 C-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET W463-2-1 Chr3 36164513 G-T 0 0 Single Base Substitution 0 INTERGENIC HET W463-2-1 Chr4 7278748 7278751 0 0 Deletion 3 W463-2-1 Chr4 8910473 G-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os04g16400 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W463-2-1 Chr5 13819575 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g23990 rp3 protein, putative, expressed W463-2-1 Chr5 17411746 C-T 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HET LOC_Os05g30090 retrotransposon protein, putative, unclassified, expressed W463-2-1 Chr5 23279078 23279085 0 0 Deletion 7 W463-2-1 Chr5 25539245 Chr1 40624405 0 Translocation 0 W463-2-1 Chr5 5274532 5274535 0 0 Deletion 3 W463-2-1 Chr5 6416410 6416421 0 0 Deletion 11 W463-2-1 Chr5 6432165 T-C 0 0 Single Base Substitution 0 INTRON HOMO W463-2-1 Chr5 9580956 A-C 0 0 Single Base Substitution 0 INTERGENIC HOMO W463-2-1 Chr6 12595622 G-C 0 0 Single Base Substitution 0 INTERGENIC HOMO W463-2-1 Chr6 13061660 13061671 0 0 Deletion 11 LOC_Os06g22470 hypothetical protein W463-2-1 Chr6 13960248 13960250 0 0 Deletion 2 LOC_Os06g23890 retrotransposon protein, putative, unclassified, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g23890 retrotransposon protein, putative, unclassified, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g23900 hypothetical protein W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g23910 expressed protein W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g23920 transposon protein, putative, CACTA, En/Spm sub-class W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g23930 expressed protein W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g23940 transposon protein, putative, CACTA, En/Spm sub-class, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g23950 OsMADS59 - MADS-box family gene with MIKCc type-box W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g23960 expressed protein W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g23970 expressed protein W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g23980 transcription factor, putative, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g23990 retrotransposon, putative, centromere-specific W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24000 expressed protein W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24010 hypothetical protein W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24020 retrotransposon protein, putative, unclassified W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24030 retrotransposon protein, putative, unclassified W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24040 expressed protein W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24050 transposon protein, putative, CACTA, En/Spm sub-class, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24060 transposon protein, putative, CACTA, En/Spm sub-class, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24070 myb-like DNA-binding domain containing protein, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24080 retrotransposon protein, putative, LINE subclass W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24090 retrotransposon protein, putative, Ty3-gypsy subclass W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24100 retrotransposon protein, putative, unclassified, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24110 retrotransposon protein, putative, unclassified, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24120 retrotransposon protein, putative, unclassified W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24130 expressed protein W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24150 retrotransposon protein, putative, Ty3-gypsy subclass W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24160 transposon protein, putative, CACTA, En/Spm sub-class, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24170 transposon protein, putative, CACTA, En/Spm sub-class, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24180 cytochrome P450 84A1, putative, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24190 expressed protein W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24200 transposon protein, putative, CACTA, En/Spm sub-class, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24210 expressed protein W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24220 transposon protein, putative, CACTA, En/Spm sub-class, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24230 transposon protein, putative, CACTA, En/Spm sub-class, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24240 expressed protein W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24250 expressed protein W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24260 expressed protein W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24270 retrotransposon protein, putative, unclassified, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24280 retrotransposon protein, putative, unclassified, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24290 SCP-like extracellular protein, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24300 hypothetical protein W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24310 retrotransposon protein, putative, unclassified, expressed W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24320 transposon protein, putative, unclassified W463-2-1 Chr6 13962001 14255000 0 0 Deletion 293000 LOC_Os06g24350 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W463-2-1 Chr6 15409840 15409850 0 0 Deletion 10 W463-2-1 Chr6 29538984 29538984 0 0 Insertion 1 LOC_Os06g48810 OsHKT2;1 - Na+ transporter, expressed W463-2-1 Chr7 1097667 C-T 0 0 Single Base Substitution 0 INTRON HOMO W463-2-1 Chr7 16478029 16478095 0 0 Deletion 66 LOC_Os07g28210 retrotransposon protein, putative, unclassified, expressed W463-2-1 Chr7 22523286 22523286 0 0 Insertion 6 W463-2-1 Chr7 24934517 24934517 0 0 Insertion 3 LOC_Os07g41600 proline-rich protein, putative, expressed W463-2-1 Chr7 26305301 T-G 0 0 Single Base Substitution 0 INTRON HOMO W463-2-1 Chr8 16988827 C-A 0 0 Single Base Substitution 0 UTR_5_PRIME HOMO W463-2-1 Chr8 22747290 T-G 0 0 Single Base Substitution 0 INTERGENIC HOMO W463-2-1 Chr8 26636302 C-A 0 0 Single Base Substitution 0 INTERGENIC HOMO W463-2-1 Chr8 27882322 C-G 0 0 Single Base Substitution 0 INTERGENIC HOMO W463-2-1 Chr8 3339205 3339206 0 0 Deletion 1 W463-2-1 Chr8 7447379 7447380 0 0 Deletion 1 W463-2-1 Chr9 12211837 C-T 0 0 Single Base Substitution 0 INTERGENIC HET W463-2-1 Chr9 21689475 21689491 0 0 Deletion 16 W463-2-1 Chr9 5384320 G-A 0 0 Single Base Substitution 0 INTERGENIC HET W463-2-1 Chr9 5540581 T-C 0 0 Single Base Substitution 0 INTERGENIC HET