W475-4-2 Chr1 2000495 2000496 0 0 Deletion 1 W475-4-2 Chr1 32570228 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO W475-4-2 Chr1 3341686 3341686 0 0 Insertion 2 W475-4-2 Chr1 34161355 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO W475-4-2 Chr1 36087332 36087338 0 0 Deletion 6 W475-4-2 Chr1 8514905 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os01g15180 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W475-4-2 Chr10 19856616 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO W475-4-2 Chr11 20254800 C-T 0 0 Single Base Substitution 0 INTERGENIC HET W475-4-2 Chr11 28732227 28732232 0 0 Deletion 5 W475-4-2 Chr11 28913097 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO W475-4-2 Chr12 12365235 C-T 0 0 Single Base Substitution 0 UTR_3_PRIME HOMO W475-4-2 Chr12 14350746 14350746 0 0 Insertion 1 W475-4-2 Chr2 16089508 C-T 0 0 Single Base Substitution 0 INTRON HOMO W475-4-2 Chr2 23668846 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO W475-4-2 Chr2 8950121 8950121 0 0 Insertion 2 W475-4-2 Chr3 19331810 T-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os03g33828 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 10395534 G-A 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET W475-4-2 Chr4 16446310 16446310 0 0 Insertion 1 W475-4-2 Chr4 16750839 16750844 0 0 Deletion 5 W475-4-2 Chr4 26135799 26135799 0 0 Insertion 3 W475-4-2 Chr4 30897236 T-C 0 0 Single Base Substitution 0 INTRON HOMO W475-4-2 Chr4 31425606 A-G 0 0 Single Base Substitution 0 INTERGENIC HOMO W475-4-2 Chr4 31425608 T-A 0 0 Single Base Substitution 0 INTERGENIC HOMO W475-4-2 Chr4 34033520 34033524 0 0 Deletion 4 LOC_Os04g57110 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 34296862 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO W475-4-2 Chr4 35358065 A-T 0 0 Single Base Substitution 0 INTERGENIC HOMO W475-4-2 Chr4 5714922 G-A 0 0 Single Base Substitution 0 INTERGENIC HET W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g12820 expressed protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g12830 expressed protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g12850 expressed protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g12864 retrotransposon protein, putative, unclassified W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g12880 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g12890 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g12900 glucosyltransferase, putative, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g12920 expressed protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g12950 indole-3-acetate beta-glucosyltransferase, putative, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g12960 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g12970 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g12980 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g12990 OsFBX122 - F-box domain containing protein, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13000 retrotransposon protein, putative, LINE subclass, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13010 OsFBX123 - F-box domain containing protein, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13020 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13030 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13040 OsFBX124 - F-box domain containing protein, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13050 expressed protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13060 expressed protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13070 hypothetical protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13080 retrotransposon, putative, centromere-specific, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13090 vignain precursor, putative, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13100 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13110 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13120 retrotransposon protein, putative, unclassified W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13130 hypothetical protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13140 vignain precursor, putative, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13150 OsFBX125 - F-box domain containing protein, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13160 OsFBD9 - F-box and FBD domain containing protein, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13170 OsFBD10 - F-box and FBD domain containing protein, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13180 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13190 expressed protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13200 expressed protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13210 multidrug resistance-associated protein, putative, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13220 ABC transporter family protein, putative, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13230 expressed protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13240 retrotransposon protein, putative, Ty1-copia subclass, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13250 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13260 expressed protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13280 expressed protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13290 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13300 hypothetical protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13310 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13320 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13330 retrotransposon protein, putative, unclassified W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13340 retrotransposon protein, putative, unclassified W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13350 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13364 transposon protein, putative, CACTA, En/Spm sub-class, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13380 transposon protein, putative, CACTA, En/Spm sub-class, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13390 retrotransposon protein, putative, unclassified W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13400 retrotransposon protein, putative, unclassified W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13410 retrotransposon protein, putative, unclassified W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13420 retrotransposon protein, putative, unclassified W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13430 expressed protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13450 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13460 expressed protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13470 expressed protein W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13480 response regulator receiver domain containing protein, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13500 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 7082001 7533000 0 0 Deletion 451000 LOC_Os04g13510 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13520 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13530 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13540 albumin-2, putative W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13550 retrotransposon protein, putative, Ty1-copia subclass, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13560 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13570 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13580 expressed protein W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13590 expressed protein W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13600 transposon protein, putative, CACTA, En/Spm sub-class W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13610 latency associated nuclear antigen, putative, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13620 transposon protein, putative, CACTA, En/Spm sub-class, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13630 transposon protein, putative, CACTA, En/Spm sub-class, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13640 protein kinase domain containing protein, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13650 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13660 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13670 retrotransposon protein, putative, Ty3-gypsy subclass W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13680 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13690 retrotransposon protein, putative, Ty3-gypsy subclass W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13700 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13710 retrotransposon protein, putative, unclassified W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13720 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13730 retrotransposon protein, putative, unclassified W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13740 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13750 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13760 retrotransposon protein, putative, Ty3-gypsy subclass W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13770 expressed protein W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13780 retrotransposon protein, putative, Ty3-gypsy subclass, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13790 retrotransposon, putative, centromere-specific, expressed W475-4-2 Chr4 7539001 7698000 0 0 Deletion 159000 LOC_Os04g13800 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr5 17063378 C-T 0 0 Single Base Substitution 0 INTERGENIC HOMO W475-4-2 Chr5 17232743 G-A 0 0 Single Base Substitution 0 NON_SYNONYMOUS_CODING HOMO LOC_Os05g29780 retrotransposon protein, putative, unclassified, expressed W475-4-2 Chr5 17289595 17289595 0 0 Insertion 4 W475-4-2 Chr5 26800148 26800159 0 0 Deletion 11 LOC_Os05g46200 beta-galactosidase 8 precursor, putative, expressed W475-4-2 Chr5 26935163 T-A 0 0 Single Base Substitution 0 INTRON HET W475-4-2 Chr5 4790836 5384617 0 0 Inversion 593781 W475-4-2 Chr5 7753800 7813644 0 0 Inversion 59844 W475-4-2 Chr6 12844099 12844109 0 0 Deletion 10 W475-4-2 Chr6 15858673 A-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HOMO W475-4-2 Chr6 22687389 T-C 0 0 Single Base Substitution 0 INTERGENIC HOMO W475-4-2 Chr6 27126757 27126777 0 0 Deletion 20 W475-4-2 Chr6 8765906 G-A 0 0 Single Base Substitution 0 INTERGENIC HOMO W475-4-2 Chr7 25799362 G-A 0 0 Single Base Substitution 0 INTRON HOMO W475-4-2 Chr8 27682136 27682139 0 0 Deletion 3 W475-4-2 Chr8 27887224 27887225 0 0 Deletion 1 W475-4-2 Chr9 13133868 13133869 0 0 Deletion 1 W475-4-2 Chr9 1330091 C-T 0 0 Single Base Substitution 0 INTERGENIC HET W475-4-2 Chr9 21892690 G-T 0 0 Single Base Substitution 0 SYNONYMOUS_CODING HET